PMC:3589482 / 18990-19182 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T10112","span":{"begin":191,"end":192},"obj":"."},{"id":"T10111","span":{"begin":181,"end":191},"obj":"NN"},{"id":"T10110","span":{"begin":177,"end":180},"obj":"IN"},{"id":"T10109","span":{"begin":175,"end":176},"obj":","},{"id":"T10108","span":{"begin":172,"end":175},"obj":"NNP"},{"id":"T10107","span":{"begin":169,"end":171},"obj":"CC"},{"id":"T10106","span":{"begin":165,"end":168},"obj":"NNP"},{"id":"T10105","span":{"begin":162,"end":164},"obj":"IN"},{"id":"T10104","span":{"begin":154,"end":161},"obj":"NN"},{"id":"T10103","span":{"begin":150,"end":153},"obj":"CC"},{"id":"T10102","span":{"begin":141,"end":149},"obj":"NN"},{"id":"T10101","span":{"begin":137,"end":140},"obj":"DT"},{"id":"T10100","span":{"begin":134,"end":136},"obj":"IN"},{"id":"T10099","span":{"begin":125,"end":133},"obj":"NN"},{"id":"T10098","span":{"begin":114,"end":124},"obj":"NN"},{"id":"T10097","span":{"begin":110,"end":113},"obj":"IN"},{"id":"T10096","span":{"begin":102,"end":109},"obj":"VBN"},{"id":"T10095","span":{"begin":98,"end":101},"obj":"CC"},{"id":"T10094","span":{"begin":86,"end":97},"obj":"NNS"},{"id":"T10093","span":{"begin":83,"end":85},"obj":"CD"},{"id":"T10092","span":{"begin":77,"end":83},"obj":"NNP"},{"id":"T10091","span":{"begin":63,"end":76},"obj":"JJ"},{"id":"T10090","span":{"begin":58,"end":62},"obj":"IN"},{"id":"T10089","span":{"begin":46,"end":57},"obj":"VBN"},{"id":"T10088","span":{"begin":34,"end":45},"obj":"RB"},{"id":"T10087","span":{"begin":29,"end":33},"obj":"RB"},{"id":"T10086","span":{"begin":24,"end":28},"obj":"VBD"},{"id":"T10085","span":{"begin":13,"end":23},"obj":"NNS"},{"id":"T10084","span":{"begin":4,"end":12},"obj":"NN"},{"id":"T10083","span":{"begin":0,"end":3},"obj":"DT"}],"relations":[{"id":"R7370","pred":"det","subj":"T10083","obj":"T10084"},{"id":"R7371","pred":"compound","subj":"T10084","obj":"T10085"},{"id":"R7372","pred":"nsubj","subj":"T10085","obj":"T10086"},{"id":"R7373","pred":"auxpass","subj":"T10086","obj":"T10089"},{"id":"R7374","pred":"advmod","subj":"T10087","obj":"T10089"},{"id":"R7375","pred":"advmod","subj":"T10088","obj":"T10089"},{"id":"R7376","pred":"ROOT","subj":"T10089","obj":"T10089"},{"id":"R7377","pred":"prep","subj":"T10090","obj":"T10089"},{"id":"R7378","pred":"compound","subj":"T10091","obj":"T10092"},{"id":"R7379","pred":"pobj","subj":"T10092","obj":"T10090"},{"id":"R7380","pred":"nummod","subj":"T10093","obj":"T10092"},{"id":"R7381","pred":"pobj","subj":"T10094","obj":"T10090"},{"id":"R7382","pred":"cc","subj":"T10095","obj":"T10089"},{"id":"R7383","pred":"conj","subj":"T10096","obj":"T10089"},{"id":"R7384","pred":"prep","subj":"T10097","obj":"T10096"},{"id":"R7385","pred":"compound","subj":"T10098","obj":"T10099"},{"id":"R7386","pred":"pobj","subj":"T10099","obj":"T10097"},{"id":"R7387","pred":"prep","subj":"T10100","obj":"T10099"},{"id":"R7388","pred":"det","subj":"T10101","obj":"T10102"},{"id":"R7389","pred":"pobj","subj":"T10102","obj":"T10100"},{"id":"R7390","pred":"cc","subj":"T10103","obj":"T10102"},{"id":"R7391","pred":"conj","subj":"T10104","obj":"T10102"},{"id":"R7392","pred":"prep","subj":"T10105","obj":"T10104"},{"id":"R7393","pred":"pobj","subj":"T10106","obj":"T10105"},{"id":"R7394","pred":"cc","subj":"T10107","obj":"T10106"},{"id":"R7395","pred":"conj","subj":"T10108","obj":"T10106"},{"id":"R7396","pred":"punct","subj":"T10109","obj":"T10096"},{"id":"R7397","pred":"prep","subj":"T10110","obj":"T10096"},{"id":"R7398","pred":"pobj","subj":"T10111","obj":"T10110"},{"id":"R7399","pred":"punct","subj":"T10112","obj":"T10089"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T9652","span":{"begin":181,"end":191},"obj":"NN"},{"id":"T9651","span":{"begin":177,"end":180},"obj":"IN"},{"id":"T9650","span":{"begin":175,"end":176},"obj":"-COMMA-"},{"id":"T9649","span":{"begin":172,"end":175},"obj":"NN"},{"id":"T9648","span":{"begin":169,"end":171},"obj":"CC"},{"id":"T9647","span":{"begin":165,"end":168},"obj":"NN"},{"id":"T9646","span":{"begin":162,"end":164},"obj":"IN"},{"id":"T9645","span":{"begin":154,"end":161},"obj":"NN"},{"id":"T9644","span":{"begin":150,"end":153},"obj":"CC"},{"id":"T9643","span":{"begin":141,"end":149},"obj":"NN"},{"id":"T9642","span":{"begin":137,"end":140},"obj":"DT"},{"id":"T9641","span":{"begin":134,"end":136},"obj":"IN"},{"id":"T9640","span":{"begin":125,"end":133},"obj":"NN"},{"id":"T9639","span":{"begin":114,"end":124},"obj":"NN"},{"id":"T9638","span":{"begin":110,"end":113},"obj":"IN"},{"id":"T9637","span":{"begin":102,"end":109},"obj":"VB"},{"id":"T9636","span":{"begin":98,"end":101},"obj":"CC"},{"id":"T9635","span":{"begin":86,"end":97},"obj":"NN"},{"id":"T9634","span":{"begin":77,"end":85},"obj":"NN"},{"id":"T9633","span":{"begin":63,"end":76},"obj":"JJ"},{"id":"T9632","span":{"begin":58,"end":62},"obj":"IN"},{"id":"T9631","span":{"begin":46,"end":57},"obj":"VB"},{"id":"T9630","span":{"begin":34,"end":45},"obj":"RB"},{"id":"T9629","span":{"begin":29,"end":33},"obj":"RB"},{"id":"T9628","span":{"begin":24,"end":28},"obj":"VB"},{"id":"T9627","span":{"begin":13,"end":23},"obj":"NN"},{"id":"T9626","span":{"begin":4,"end":12},"obj":"NN"},{"id":"T9625","span":{"begin":0,"end":3},"obj":"DT"}],"relations":[{"id":"R7022","pred":"arg1Of","subj":"T9627","obj":"T9625"},{"id":"R7023","pred":"arg1Of","subj":"T9627","obj":"T9626"},{"id":"R7024","pred":"arg1Of","subj":"T9627","obj":"T9628"},{"id":"R7025","pred":"arg2Of","subj":"T9627","obj":"T9631"},{"id":"R7026","pred":"arg2Of","subj":"T9627","obj":"T9637"},{"id":"R7027","pred":"arg1Of","subj":"T9631","obj":"T9632"},{"id":"R7028","pred":"arg1Of","subj":"T9631","obj":"T9636"},{"id":"R7029","pred":"arg2Of","subj":"T9635","obj":"T9632"},{"id":"R7030","pred":"arg1Of","subj":"T9635","obj":"T9633"},{"id":"R7031","pred":"arg1Of","subj":"T9635","obj":"T9634"},{"id":"R7032","pred":"arg2Of","subj":"T9636","obj":"T9628"},{"id":"R7033","pred":"arg1Of","subj":"T9636","obj":"T9629"},{"id":"R7034","pred":"arg1Of","subj":"T9636","obj":"T9630"},{"id":"R7035","pred":"arg1Of","subj":"T9636","obj":"T9650"},{"id":"R7036","pred":"arg1Of","subj":"T9636","obj":"T9651"},{"id":"R7037","pred":"arg2Of","subj":"T9637","obj":"T9636"},{"id":"R7038","pred":"arg1Of","subj":"T9637","obj":"T9638"},{"id":"R7039","pred":"arg1Of","subj":"T9637","obj":"T9641"},{"id":"R7040","pred":"arg2Of","subj":"T9640","obj":"T9638"},{"id":"R7041","pred":"arg1Of","subj":"T9640","obj":"T9639"},{"id":"R7042","pred":"arg1Of","subj":"T9643","obj":"T9644"},{"id":"R7043","pred":"arg2Of","subj":"T9644","obj":"T9641"},{"id":"R7044","pred":"arg1Of","subj":"T9644","obj":"T9642"},{"id":"R7045","pred":"arg1Of","subj":"T9644","obj":"T9646"},{"id":"R7046","pred":"arg2Of","subj":"T9645","obj":"T9644"},{"id":"R7047","pred":"arg1Of","subj":"T9647","obj":"T9648"},{"id":"R7048","pred":"arg2Of","subj":"T9648","obj":"T9646"},{"id":"R7049","pred":"arg2Of","subj":"T9649","obj":"T9648"},{"id":"R7050","pred":"arg2Of","subj":"T9652","obj":"T9651"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T9529","span":{"begin":114,"end":124},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T9898","span":{"begin":114,"end":124},"obj":"http://www.uniprot.org/uniprot/P08659"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T9541","span":{"begin":114,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0050397"},{"id":"T9540","span":{"begin":114,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0050248"},{"id":"T9539","span":{"begin":114,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0047712"},{"id":"T9538","span":{"begin":114,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0047077"},{"id":"T9537","span":{"begin":114,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0045289"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T9552","span":{"begin":114,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0050397"},{"id":"T9551","span":{"begin":114,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0050248"},{"id":"T9550","span":{"begin":114,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0047712"},{"id":"T9549","span":{"begin":114,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0047077"},{"id":"T9548","span":{"begin":114,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0045289"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}

    sentences

    {"project":"sentences","denotations":[{"id":"T9471","span":{"begin":0,"end":192},"obj":"Sentence"},{"id":"T124","span":{"begin":0,"end":192},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}

    simple1

    {"project":"simple1","denotations":[{"id":"T9557","span":{"begin":114,"end":124},"obj":"Protein"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T9870","span":{"begin":114,"end":124},"obj":"Protein"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T9929","span":{"begin":114,"end":124},"obj":"Protein"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T9903","span":{"begin":114,"end":124},"obj":"Protein"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T10011","span":{"begin":172,"end":175},"obj":"Entity"},{"id":"T10010","span":{"begin":114,"end":124},"obj":"Protein"},{"id":"T9996","span":{"begin":165,"end":168},"obj":"Entity"},{"id":"T9978","span":{"begin":63,"end":97},"obj":"Entity"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T9944","span":{"begin":114,"end":124},"obj":"Protein"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}

    testone

    {"project":"testone","denotations":[{"id":"T9435","span":{"begin":114,"end":124},"obj":"Protein"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}

    test3

    {"project":"test3","denotations":[{"id":"T9448","span":{"begin":114,"end":124},"obj":"Protein"},{"id":"T9459","span":{"begin":114,"end":124},"obj":"Protein"}],"text":"The reporter constructs were then transiently transfected into sub-confluent RAW264.7 macrophages and assayed for luciferase activity in the presence and absence of LPS or PMA, for comparison."}