PMC:3589482 / 17848-17979
Annnotations
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T9384","span":{"begin":130,"end":131},"obj":"."},{"id":"T9383","span":{"begin":129,"end":130},"obj":"NNP"},{"id":"T9382","span":{"begin":127,"end":129},"obj":"CD"},{"id":"T9381","span":{"begin":126,"end":127},"obj":"NNP"},{"id":"T9380","span":{"begin":124,"end":125},"obj":"NNP"},{"id":"T9379","span":{"begin":122,"end":124},"obj":"CD"},{"id":"T9378","span":{"begin":121,"end":122},"obj":"NNP"},{"id":"T9377","span":{"begin":119,"end":120},"obj":":"},{"id":"T9376","span":{"begin":118,"end":119},"obj":"NNP"},{"id":"T9375","span":{"begin":116,"end":118},"obj":"CD"},{"id":"T9374","span":{"begin":115,"end":116},"obj":"NNP"},{"id":"T9373","span":{"begin":113,"end":114},"obj":":"},{"id":"T9372","span":{"begin":112,"end":113},"obj":"NNP"},{"id":"T9371","span":{"begin":111,"end":112},"obj":"CD"},{"id":"T9370","span":{"begin":110,"end":111},"obj":"NNP"},{"id":"T9369","span":{"begin":105,"end":109},"obj":"NNP"},{"id":"T9368","span":{"begin":101,"end":104},"obj":"DT"},{"id":"T9367","span":{"begin":98,"end":100},"obj":"IN"},{"id":"T9366","span":{"begin":84,"end":97},"obj":"NN"},{"id":"T9365","span":{"begin":80,"end":83},"obj":"CC"},{"id":"T9364","span":{"begin":66,"end":79},"obj":"NN"},{"id":"T9363","span":{"begin":61,"end":65},"obj":"NN"},{"id":"T9362","span":{"begin":58,"end":60},"obj":"IN"},{"id":"T9361","span":{"begin":49,"end":57},"obj":"NN"},{"id":"T9360","span":{"begin":46,"end":48},"obj":"DT"},{"id":"T9359","span":{"begin":41,"end":45},"obj":"DT"},{"id":"T9358","span":{"begin":32,"end":40},"obj":"VBZ"},{"id":"T9357","span":{"begin":21,"end":31},"obj":"NN"},{"id":"T9356","span":{"begin":12,"end":20},"obj":"JJ"},{"id":"T9355","span":{"begin":0,"end":11},"obj":"JJ"}],"relations":[{"id":"R6857","pred":"amod","subj":"T9355","obj":"T9357"},{"id":"R6858","pred":"amod","subj":"T9356","obj":"T9357"},{"id":"R6859","pred":"nsubj","subj":"T9357","obj":"T9358"},{"id":"R6860","pred":"ROOT","subj":"T9358","obj":"T9358"},{"id":"R6861","pred":"nsubj","subj":"T9359","obj":"T9361"},{"id":"R6862","pred":"det","subj":"T9360","obj":"T9361"},{"id":"R6863","pred":"dobj","subj":"T9361","obj":"T9358"},{"id":"R6864","pred":"prep","subj":"T9362","obj":"T9361"},{"id":"R6865","pred":"compound","subj":"T9363","obj":"T9364"},{"id":"R6866","pred":"pobj","subj":"T9364","obj":"T9362"},{"id":"R6867","pred":"cc","subj":"T9365","obj":"T9364"},{"id":"R6868","pred":"conj","subj":"T9366","obj":"T9364"},{"id":"R6869","pred":"prep","subj":"T9367","obj":"T9366"},{"id":"R6870","pred":"det","subj":"T9368","obj":"T9372"},{"id":"R6871","pred":"compound","subj":"T9369","obj":"T9370"},{"id":"R6872","pred":"nmod","subj":"T9370","obj":"T9372"},{"id":"R6873","pred":"nummod","subj":"T9371","obj":"T9372"},{"id":"R6874","pred":"pobj","subj":"T9372","obj":"T9367"},{"id":"R6875","pred":"punct","subj":"T9373","obj":"T9358"},{"id":"R6876","pred":"compound","subj":"T9374","obj":"T9376"},{"id":"R6877","pred":"compound","subj":"T9375","obj":"T9376"},{"id":"R6878","pred":"dep","subj":"T9376","obj":"T9358"},{"id":"R6879","pred":"punct","subj":"T9377","obj":"T9376"},{"id":"R6880","pred":"nmod","subj":"T9378","obj":"T9380"},{"id":"R6881","pred":"nummod","subj":"T9379","obj":"T9380"},{"id":"R6882","pred":"meta","subj":"T9380","obj":"T9381"},{"id":"R6883","pred":"appos","subj":"T9381","obj":"T9376"},{"id":"R6884","pred":"nummod","subj":"T9382","obj":"T9383"},{"id":"R6885","pred":"dobj","subj":"T9383","obj":"T9381"},{"id":"R6886","pred":"punct","subj":"T9384","obj":"T9381"}],"text":"LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44]."}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T9150","span":{"begin":129,"end":130},"obj":"-RRB-"},{"id":"T9149","span":{"begin":127,"end":129},"obj":"CD"},{"id":"T9148","span":{"begin":126,"end":127},"obj":"-LRB-"},{"id":"T9147","span":{"begin":125,"end":126},"obj":"NN"},{"id":"T9146","span":{"begin":124,"end":125},"obj":"-RRB-"},{"id":"T9145","span":{"begin":122,"end":124},"obj":"CD"},{"id":"T9144","span":{"begin":121,"end":122},"obj":"-LRB-"},{"id":"T9143","span":{"begin":119,"end":120},"obj":"-COLON-"},{"id":"T9142","span":{"begin":118,"end":119},"obj":"-RRB-"},{"id":"T9141","span":{"begin":116,"end":118},"obj":"CD"},{"id":"T9140","span":{"begin":115,"end":116},"obj":"-LRB-"},{"id":"T9139","span":{"begin":113,"end":114},"obj":"-COLON-"},{"id":"T9138","span":{"begin":112,"end":113},"obj":"-RRB-"},{"id":"T9137","span":{"begin":111,"end":112},"obj":"CD"},{"id":"T9136","span":{"begin":110,"end":111},"obj":"-LRB-"},{"id":"T9135","span":{"begin":105,"end":109},"obj":"NN"},{"id":"T9134","span":{"begin":101,"end":104},"obj":"DT"},{"id":"T9133","span":{"begin":98,"end":100},"obj":"IN"},{"id":"T9132","span":{"begin":84,"end":97},"obj":"NN"},{"id":"T9131","span":{"begin":80,"end":83},"obj":"CC"},{"id":"T9130","span":{"begin":66,"end":79},"obj":"NN"},{"id":"T9129","span":{"begin":61,"end":65},"obj":"NN"},{"id":"T9128","span":{"begin":58,"end":60},"obj":"IN"},{"id":"T9127","span":{"begin":49,"end":57},"obj":"NN"},{"id":"T9126","span":{"begin":46,"end":48},"obj":"DT"},{"id":"T9125","span":{"begin":41,"end":45},"obj":"CC"},{"id":"T9124","span":{"begin":32,"end":40},"obj":"VB"},{"id":"T9123","span":{"begin":21,"end":31},"obj":"NN"},{"id":"T9122","span":{"begin":12,"end":20},"obj":"NN"},{"id":"T9121","span":{"begin":0,"end":11},"obj":"JJ"}],"relations":[{"id":"R6680","pred":"arg1Of","subj":"T9123","obj":"T9121"},{"id":"R6681","pred":"arg1Of","subj":"T9123","obj":"T9122"},{"id":"R6682","pred":"arg1Of","subj":"T9123","obj":"T9124"},{"id":"R6683","pred":"arg1Of","subj":"T9124","obj":"T9148"},{"id":"R6684","pred":"arg2Of","subj":"T9127","obj":"T9124"},{"id":"R6685","pred":"arg1Of","subj":"T9127","obj":"T9125"},{"id":"R6686","pred":"arg1Of","subj":"T9127","obj":"T9126"},{"id":"R6687","pred":"arg1Of","subj":"T9127","obj":"T9128"},{"id":"R6688","pred":"arg1Of","subj":"T9127","obj":"T9139"},{"id":"R6689","pred":"arg1Of","subj":"T9127","obj":"T9140"},{"id":"R6690","pred":"arg1Of","subj":"T9127","obj":"T9143"},{"id":"R6691","pred":"arg1Of","subj":"T9130","obj":"T9131"},{"id":"R6692","pred":"arg2Of","subj":"T9131","obj":"T9128"},{"id":"R6693","pred":"arg1Of","subj":"T9131","obj":"T9129"},{"id":"R6694","pred":"arg1Of","subj":"T9131","obj":"T9133"},{"id":"R6695","pred":"arg1Of","subj":"T9131","obj":"T9136"},{"id":"R6696","pred":"arg2Of","subj":"T9132","obj":"T9131"},{"id":"R6697","pred":"arg2Of","subj":"T9135","obj":"T9133"},{"id":"R6698","pred":"arg1Of","subj":"T9135","obj":"T9134"},{"id":"R6699","pred":"arg2Of","subj":"T9137","obj":"T9136"},{"id":"R6700","pred":"arg3Of","subj":"T9138","obj":"T9136"},{"id":"R6701","pred":"arg2Of","subj":"T9141","obj":"T9140"},{"id":"R6702","pred":"arg3Of","subj":"T9142","obj":"T9140"},{"id":"R6703","pred":"arg2Of","subj":"T9145","obj":"T9144"},{"id":"R6704","pred":"arg3Of","subj":"T9146","obj":"T9144"},{"id":"R6705","pred":"arg2Of","subj":"T9147","obj":"T9143"},{"id":"R6706","pred":"arg1Of","subj":"T9147","obj":"T9144"},{"id":"R6707","pred":"arg2Of","subj":"T9149","obj":"T9148"},{"id":"R6708","pred":"arg3Of","subj":"T9150","obj":"T9148"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44]."}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T9036","span":{"begin":12,"end":20},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44]."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T9197","span":{"begin":12,"end":20},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44]."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T9039","span":{"begin":84,"end":109},"obj":"http://purl.obolibrary.org/obo/GO_0048255"},{"id":"T9038","span":{"begin":66,"end":79},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44]."}
sentences
{"project":"sentences","denotations":[{"id":"T9016","span":{"begin":0,"end":131},"obj":"Sentence"},{"id":"T116","span":{"begin":0,"end":131},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44]."}
simple1
{"project":"simple1","denotations":[{"id":"T9050","span":{"begin":12,"end":20},"obj":"Protein"}],"text":"LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44]."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T9191","span":{"begin":0,"end":11},"obj":"Positive_regulation"},{"id":"T9190","span":{"begin":21,"end":31},"obj":"Gene_expression"},{"id":"T9184","span":{"begin":12,"end":20},"obj":"Protein"}],"relations":[{"id":"R6742","pred":"themeOf","subj":"T9184","obj":"T9190"},{"id":"R6746","pred":"themeOf","subj":"T9190","obj":"T9191"}],"text":"LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44]."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T9230","span":{"begin":0,"end":11},"obj":"Positive_regulation"},{"id":"T9229","span":{"begin":21,"end":31},"obj":"Gene_expression"},{"id":"T9224","span":{"begin":12,"end":20},"obj":"Protein"}],"relations":[{"id":"R6761","pred":"themeOf","subj":"T9224","obj":"T9229"},{"id":"R6765","pred":"themeOf","subj":"T9229","obj":"T9230"}],"text":"LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44]."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T9210","span":{"begin":0,"end":11},"obj":"Positive_regulation"},{"id":"T9209","span":{"begin":21,"end":31},"obj":"Gene_expression"},{"id":"T9202","span":{"begin":12,"end":20},"obj":"Protein"}],"relations":[{"id":"R6751","pred":"themeOf","subj":"T9202","obj":"T9209"},{"id":"R6755","pred":"themeOf","subj":"T9209","obj":"T9210"}],"text":"LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44]."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T9282","span":{"begin":46,"end":79},"obj":"Positive_regulation"},{"id":"T9280","span":{"begin":0,"end":31},"obj":"Gene_expression"},{"id":"T9279","span":{"begin":58,"end":79},"obj":"Transcription"},{"id":"T9275","span":{"begin":12,"end":20},"obj":"Protein"},{"id":"T9274","span":{"begin":98,"end":109},"obj":"Protein"},{"id":"T9272","span":{"begin":0,"end":11},"obj":"Entity"},{"id":"T9269","span":{"begin":61,"end":65},"obj":"Protein"}],"relations":[{"id":"R6782","pred":"themeOf","subj":"T9269","obj":"T9279"},{"id":"R6783","pred":"themeOf","subj":"T9275","obj":"T9280"},{"id":"R6784","pred":"themeOf","subj":"T9279","obj":"T9282"}],"text":"LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44]."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T9241","span":{"begin":0,"end":11},"obj":"Positive_regulation"},{"id":"T9240","span":{"begin":21,"end":31},"obj":"Gene_expression"},{"id":"T9239","span":{"begin":12,"end":20},"obj":"Protein"}],"relations":[{"id":"R6770","pred":"themeOf","subj":"T9239","obj":"T9240"},{"id":"R6771","pred":"themeOf","subj":"T9240","obj":"T9241"}],"text":"LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44]."}
testone
{"project":"testone","denotations":[{"id":"T8992","span":{"begin":4,"end":11},"obj":"Positive_regulation"},{"id":"T8986","span":{"begin":12,"end":20},"obj":"Protein"}],"text":"LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44]."}
test3
{"project":"test3","denotations":[{"id":"T9008","span":{"begin":21,"end":31},"obj":"Gene_expression"},{"id":"T9007","span":{"begin":12,"end":20},"obj":"Protein"},{"id":"T9006","span":{"begin":4,"end":11},"obj":"Positive_regulation"},{"id":"T8997","span":{"begin":12,"end":20},"obj":"Protein"}],"relations":[{"id":"R6595","pred":"themeOf","subj":"T9007","obj":"T9008"},{"id":"R6596","pred":"themeOf","subj":"T9008","obj":"T9006"}],"text":"LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44]."}