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PMC:3589482 / 17848-17979 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9384 130-131 . denotes .
T9383 129-130 NNP denotes ]
T9382 127-129 CD denotes 44
T9381 126-127 NNP denotes [
T9380 124-125 NNP denotes ]
T9379 122-124 CD denotes 42
T9378 121-122 NNP denotes [
T9377 119-120 : denotes ;
T9376 118-119 NNP denotes ]
T9375 116-118 CD denotes 29
T9374 115-116 NNP denotes [
T9373 113-114 : denotes ;
T9372 112-113 NNP denotes ]
T9371 111-112 CD denotes 5
T9370 110-111 NNP denotes [
T9369 105-109 NNP denotes mRNA
T9368 101-104 DT denotes the
T9367 98-100 IN denotes of
T9366 84-97 NN denotes stabilization
T9365 80-83 CC denotes and
T9364 66-79 NN denotes transcription
T9363 61-65 NN denotes gene
T9362 58-60 IN denotes in
T9361 49-57 NN denotes increase
T9360 46-48 DT denotes an
T9359 41-45 DT denotes both
T9358 32-40 VBZ denotes involves
T9357 21-31 NN denotes expression
T9356 12-20 JJ denotes SerpinB2
T9355 0-11 JJ denotes LPS-induced
R6857 T9355 T9357 amod LPS-induced,expression
R6858 T9356 T9357 amod SerpinB2,expression
R6859 T9357 T9358 nsubj expression,involves
R6860 T9358 T9358 ROOT involves,involves
R6861 T9359 T9361 nsubj both,increase
R6862 T9360 T9361 det an,increase
R6863 T9361 T9358 dobj increase,involves
R6864 T9362 T9361 prep in,increase
R6865 T9363 T9364 compound gene,transcription
R6866 T9364 T9362 pobj transcription,in
R6867 T9365 T9364 cc and,transcription
R6868 T9366 T9364 conj stabilization,transcription
R6869 T9367 T9366 prep of,stabilization
R6870 T9368 T9372 det the,]
R6871 T9369 T9370 compound mRNA,[
R6872 T9370 T9372 nmod [,]
R6873 T9371 T9372 nummod 5,]
R6874 T9372 T9367 pobj ],of
R6875 T9373 T9358 punct ;,involves
R6876 T9374 T9376 compound [,]
R6877 T9375 T9376 compound 29,]
R6878 T9376 T9358 dep ],involves
R6879 T9377 T9376 punct ;,]
R6880 T9378 T9380 nmod [,]
R6881 T9379 T9380 nummod 42,]
R6882 T9380 T9381 meta ],[
R6883 T9381 T9376 appos [,]
R6884 T9382 T9383 nummod 44,]
R6885 T9383 T9381 dobj ],[
R6886 T9384 T9381 punct .,[

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9150 129-130 -RRB- denotes ]
T9149 127-129 CD denotes 44
T9148 126-127 -LRB- denotes [
T9147 125-126 NN denotes –
T9146 124-125 -RRB- denotes ]
T9145 122-124 CD denotes 42
T9144 121-122 -LRB- denotes [
T9143 119-120 -COLON- denotes ;
T9142 118-119 -RRB- denotes ]
T9141 116-118 CD denotes 29
T9140 115-116 -LRB- denotes [
T9139 113-114 -COLON- denotes ;
T9138 112-113 -RRB- denotes ]
T9137 111-112 CD denotes 5
T9136 110-111 -LRB- denotes [
T9135 105-109 NN denotes mRNA
T9134 101-104 DT denotes the
T9133 98-100 IN denotes of
T9132 84-97 NN denotes stabilization
T9131 80-83 CC denotes and
T9130 66-79 NN denotes transcription
T9129 61-65 NN denotes gene
T9128 58-60 IN denotes in
T9127 49-57 NN denotes increase
T9126 46-48 DT denotes an
T9125 41-45 CC denotes both
T9124 32-40 VB denotes involves
T9123 21-31 NN denotes expression
T9122 12-20 NN denotes SerpinB2
T9121 0-11 JJ denotes LPS-induced
R6680 T9123 T9121 arg1Of expression,LPS-induced
R6681 T9123 T9122 arg1Of expression,SerpinB2
R6682 T9123 T9124 arg1Of expression,involves
R6683 T9124 T9148 arg1Of involves,[
R6684 T9127 T9124 arg2Of increase,involves
R6685 T9127 T9125 arg1Of increase,both
R6686 T9127 T9126 arg1Of increase,an
R6687 T9127 T9128 arg1Of increase,in
R6688 T9127 T9139 arg1Of increase,;
R6689 T9127 T9140 arg1Of increase,[
R6690 T9127 T9143 arg1Of increase,;
R6691 T9130 T9131 arg1Of transcription,and
R6692 T9131 T9128 arg2Of and,in
R6693 T9131 T9129 arg1Of and,gene
R6694 T9131 T9133 arg1Of and,of
R6695 T9131 T9136 arg1Of and,[
R6696 T9132 T9131 arg2Of stabilization,and
R6697 T9135 T9133 arg2Of mRNA,of
R6698 T9135 T9134 arg1Of mRNA,the
R6699 T9137 T9136 arg2Of 5,[
R6700 T9138 T9136 arg3Of ],[
R6701 T9141 T9140 arg2Of 29,[
R6702 T9142 T9140 arg3Of ],[
R6703 T9145 T9144 arg2Of 42,[
R6704 T9146 T9144 arg3Of ],[
R6705 T9147 T9143 arg2Of –,;
R6706 T9147 T9144 arg1Of –,[
R6707 T9149 T9148 arg2Of 44,[
R6708 T9150 T9148 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9036 12-20 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9197 12-20 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T9039 84-109 http://purl.obolibrary.org/obo/GO_0048255 denotes stabilization of the mRNA
T9038 66-79 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T9016 0-131 Sentence denotes LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44].
T116 0-131 Sentence denotes LPS-induced SerpinB2 expression involves both an increase in gene transcription and stabilization of the mRNA [5]; [29]; [42]–[44].

simple1

Id Subject Object Predicate Lexical cue
T9050 12-20 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9191 0-11 Positive_regulation denotes LPS-induced
T9190 21-31 Gene_expression denotes expression
T9184 12-20 Protein denotes SerpinB2
R6742 T9184 T9190 themeOf SerpinB2,expression
R6746 T9190 T9191 themeOf expression,LPS-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9230 0-11 Positive_regulation denotes LPS-induced
T9229 21-31 Gene_expression denotes expression
T9224 12-20 Protein denotes SerpinB2
R6761 T9224 T9229 themeOf SerpinB2,expression
R6765 T9229 T9230 themeOf expression,LPS-induced

DLUT931

Id Subject Object Predicate Lexical cue
T9210 0-11 Positive_regulation denotes LPS-induced
T9209 21-31 Gene_expression denotes expression
T9202 12-20 Protein denotes SerpinB2
R6751 T9202 T9209 themeOf SerpinB2,expression
R6755 T9209 T9210 themeOf expression,LPS-induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T9282 46-79 Positive_regulation denotes an increase in gene transcription
T9280 0-31 Gene_expression denotes LPS-induced SerpinB2 expression
T9279 58-79 Transcription denotes in gene transcription
T9275 12-20 Protein denotes SerpinB2
T9274 98-109 Protein denotes of the mRNA
T9272 0-11 Entity denotes LPS-induced
T9269 61-65 Protein denotes gene
R6782 T9269 T9279 themeOf gene,in gene transcription
R6783 T9275 T9280 themeOf SerpinB2,LPS-induced SerpinB2 expression
R6784 T9279 T9282 themeOf in gene transcription,an increase in gene transcription

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9241 0-11 Positive_regulation denotes LPS-induced
T9240 21-31 Gene_expression denotes expression
T9239 12-20 Protein denotes SerpinB2
R6770 T9239 T9240 themeOf SerpinB2,expression
R6771 T9240 T9241 themeOf expression,LPS-induced

testone

Id Subject Object Predicate Lexical cue
T8992 4-11 Positive_regulation denotes induced
T8986 12-20 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T9008 21-31 Gene_expression denotes expression
T9007 12-20 Protein denotes SerpinB2
T9006 4-11 Positive_regulation denotes induced
T8997 12-20 Protein denotes SerpinB2
R6595 T9007 T9008 themeOf SerpinB2,expression
R6596 T9008 T9006 themeOf expression,induced