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PMC:3589482 / 15089-15363 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8166 273-274 . denotes .
T8165 262-273 NN denotes temperature
T8164 257-261 NN denotes room
T8163 254-256 IN denotes at
T8162 246-253 NNS denotes minutes
T8161 243-245 CD denotes 20
T8160 239-242 IN denotes for
T8159 229-238 VBN denotes performed
T8158 224-228 VBD denotes were
T8157 218-223 NN denotes probe
T8156 204-217 VBN denotes radiolabelled
T8155 201-203 IN denotes of
T8154 199-200 -RRB- denotes )
T8153 197-199 NN denotes ng
T8152 193-196 CD denotes 0.2
T8151 190-192 TO denotes to
T8150 185-189 CD denotes 0.05
T8149 184-185 -LRB- denotes (
T8148 180-183 NN denotes cpm
T8147 173-179 CD denotes 20,000
T8146 170-172 TO denotes to
T8145 163-169 CD denotes 10,000
T8144 159-162 CC denotes and
T8143 150-158 NNS denotes extracts
T8142 142-149 JJ denotes nuclear
T8141 139-141 IN denotes of
T8140 136-138 NN denotes µg
T8139 134-135 CD denotes 6
T8107 30-40 VBG denotes containing
T8106 28-29 -RRB- denotes )
T8105 26-28 NN denotes µl
T8104 23-25 CD denotes 25
T8103 22-23 -LRB- denotes (
T8102 12-21 NNS denotes reactions
T8101 4-11 JJ denotes binding
T8100 0-3 NNP denotes DNA
T8138 132-133 , denotes ,
T8137 131-132 -RRB- denotes )
T8136 126-131 JJ denotes dI-dC
T8135 125-126 -LRB- denotes (
T8134 120-124 NN denotes poly
T8133 117-119 NN denotes µg
T8132 115-116 CD denotes 1
T8131 113-114 , denotes ,
T8130 103-113 NN denotes Ficoll-400
T8129 101-102 NN denotes %
T8128 99-101 CD denotes 20
T8127 97-98 , denotes ,
T8126 89-97 NN denotes glycerol
T8125 87-88 NN denotes %
T8124 85-87 CD denotes 30
T8123 83-84 , denotes ,
T8122 80-83 NNP denotes DTT
T8121 77-79 NNP denotes mM
T8120 75-76 CD denotes 2
T8119 73-74 , denotes ,
T8118 70-73 NNP denotes BSA
T8117 67-69 NN denotes ml
T8116 66-67 NN denotes /
T8115 64-66 NN denotes µg
T8114 61-63 CD denotes 10
T8113 59-60 , denotes ,
T8112 56-59 CD denotes 7.9
T8111 53-55 NNP denotes pH
T8110 47-52 NNP denotes HEPES
T8109 44-46 NNP denotes mM
T8108 41-43 CD denotes 10
R5822 T8100 T8159 nsubjpass DNA,performed
R5823 T8101 T8102 amod binding,reactions
R5824 T8102 T8100 dobj reactions,DNA
R5825 T8103 T8102 punct (,reactions
R5826 T8104 T8105 nummod 25,µl
R5827 T8105 T8102 appos µl,reactions
R5828 T8106 T8105 punct ),µl
R5829 T8107 T8105 acl containing,µl
R5830 T8108 T8111 nummod 10,pH
R5831 T8109 T8111 compound mM,pH
R5832 T8110 T8111 compound HEPES,pH
R5833 T8111 T8107 dobj pH,containing
R5834 T8112 T8111 nummod 7.9,pH
R5835 T8113 T8111 punct ",",pH
R5836 T8114 T8118 nummod 10,BSA
R5837 T8115 T8118 amod µg,BSA
R5838 T8116 T8118 nmod /,BSA
R5839 T8117 T8118 compound ml,BSA
R5840 T8118 T8111 appos BSA,pH
R5841 T8119 T8111 punct ",",pH
R5842 T8120 T8122 nummod 2,DTT
R5843 T8121 T8122 compound mM,DTT
R5844 T8122 T8111 conj DTT,pH
R5845 T8123 T8122 punct ",",DTT
R5846 T8124 T8125 nummod 30,%
R5847 T8125 T8126 compound %,glycerol
R5848 T8126 T8122 conj glycerol,DTT
R5849 T8127 T8126 punct ",",glycerol
R5850 T8128 T8129 nummod 20,%
R5851 T8129 T8130 compound %,Ficoll-400
R5852 T8130 T8126 appos Ficoll-400,glycerol
R5853 T8131 T8130 punct ",",Ficoll-400
R5854 T8132 T8134 nummod 1,poly
R5855 T8133 T8134 compound µg,poly
R5856 T8134 T8159 nsubjpass poly,performed
R5857 T8135 T8136 punct (,dI-dC
R5858 T8136 T8134 appos dI-dC,poly
R5859 T8137 T8136 punct ),dI-dC
R5860 T8138 T8134 punct ",",poly
R5861 T8139 T8140 nummod 6,µg
R5862 T8140 T8134 appos µg,poly
R5863 T8141 T8140 prep of,µg
R5864 T8142 T8143 amod nuclear,extracts
R5865 T8143 T8141 pobj extracts,of
R5866 T8144 T8140 cc and,µg
R5867 T8145 T8147 quantmod "10,000","20,000"
R5868 T8146 T8147 quantmod to,"20,000"
R5869 T8147 T8148 nummod "20,000",cpm
R5870 T8148 T8140 conj cpm,µg
R5871 T8149 T8153 punct (,ng
R5872 T8150 T8152 quantmod 0.05,0.2
R5873 T8151 T8152 quantmod to,0.2
R5874 T8152 T8153 nummod 0.2,ng
R5875 T8153 T8148 appos ng,cpm
R5876 T8154 T8153 punct ),ng
R5877 T8155 T8148 prep of,cpm
R5878 T8156 T8157 amod radiolabelled,probe
R5879 T8157 T8155 pobj probe,of
R5880 T8158 T8159 auxpass were,performed
R5881 T8159 T8159 ROOT performed,performed
R5882 T8160 T8159 prep for,performed
R5883 T8161 T8162 nummod 20,minutes
R5884 T8162 T8160 pobj minutes,for
R5885 T8163 T8162 prep at,minutes
R5886 T8164 T8165 compound room,temperature
R5887 T8165 T8163 pobj temperature,at
R5888 T8166 T8159 punct .,performed

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7936 262-273 NN denotes temperature
T7935 257-261 NN denotes room
T7934 254-256 IN denotes at
T7933 246-253 NN denotes minutes
T7932 243-245 CD denotes 20
T7931 239-242 IN denotes for
T7930 229-238 VB denotes performed
T7929 224-228 VB denotes were
T7928 218-223 NN denotes probe
T7927 204-217 VB denotes radiolabelled
T7926 201-203 IN denotes of
T7925 199-200 -RRB- denotes )
T7924 197-199 NN denotes ng
T7923 193-196 CD denotes 0.2
T7922 190-192 TO denotes to
T7921 185-189 CD denotes 0.05
T7920 184-185 -LRB- denotes (
T7919 180-183 NN denotes cpm
T7918 173-179 CD denotes 20,000
T7917 170-172 TO denotes to
T7916 163-169 CD denotes 10,000
T7915 159-162 CC denotes and
T7914 150-158 NN denotes extracts
T7913 142-149 JJ denotes nuclear
T7912 139-141 IN denotes of
T7911 136-138 NN denotes µg
T7910 134-135 CD denotes 6
T7909 132-133 -COMMA- denotes ,
T7908 131-132 -RRB- denotes )
T7907 126-131 NN denotes dI-dC
T7906 125-126 -LRB- denotes (
T7905 120-124 NN denotes poly
T7904 117-119 NN denotes µg
T7903 115-116 CD denotes 1
T7902 113-114 -COMMA- denotes ,
T7901 103-113 NN denotes Ficoll-400
T7900 101-102 NN denotes %
T7899 99-101 CD denotes 20
T7898 97-98 -COMMA- denotes ,
T7897 89-97 NN denotes glycerol
T7896 87-88 NN denotes %
T7895 85-87 CD denotes 30
T7894 83-84 -COMMA- denotes ,
T7893 80-83 NN denotes DTT
T7892 77-79 NN denotes mM
T7891 75-76 CD denotes 2
T7890 73-74 -COMMA- denotes ,
T7889 70-73 NNP denotes BSA
T7888 64-69 NN denotes µg/ml
T7887 61-63 CD denotes 10
T7886 59-60 -COMMA- denotes ,
T7885 56-59 CD denotes 7.9
T7884 53-55 NN denotes pH
T7883 47-52 NN denotes HEPES
T7882 44-46 NN denotes mM
T7881 41-43 CD denotes 10
T7880 30-40 VB denotes containing
T7879 28-29 -RRB- denotes )
T7878 26-28 NN denotes µl
T7877 23-25 CD denotes 25
T7876 22-23 -LRB- denotes (
T7875 12-21 NN denotes reactions
T7874 4-11 NN denotes binding
T7873 0-3 NN denotes DNA
R5642 T7875 T7873 arg1Of reactions,DNA
R5643 T7875 T7874 arg1Of reactions,binding
R5644 T7875 T7876 arg1Of reactions,(
R5645 T7875 T7880 arg1Of reactions,containing
R5646 T7875 T7890 arg1Of reactions,","
R5647 T7875 T7909 arg1Of reactions,","
R5648 T7878 T7876 arg2Of µl,(
R5649 T7878 T7877 arg1Of µl,25
R5650 T7879 T7876 arg3Of ),(
R5651 T7881 T7882 arg1Of 10,mM
R5652 T7885 T7886 arg1Of 7.9,","
R5653 T7888 T7886 arg2Of µg/ml,","
R5654 T7888 T7887 arg1Of µg/ml,10
R5655 T7889 T7880 arg2Of BSA,containing
R5656 T7889 T7881 arg1Of BSA,10
R5657 T7889 T7883 arg1Of BSA,HEPES
R5658 T7889 T7884 arg1Of BSA,pH
R5659 T7889 T7885 arg1Of BSA,7.9
R5660 T7889 T7888 arg1Of BSA,µg/ml
R5661 T7891 T7892 arg1Of 2,mM
R5662 T7893 T7891 arg1Of DTT,2
R5663 T7893 T7894 arg1Of DTT,","
R5664 T7894 T7898 arg1Of ",",","
R5665 T7895 T7896 arg1Of 30,%
R5666 T7897 T7894 arg2Of glycerol,","
R5667 T7897 T7895 arg1Of glycerol,30
R5668 T7898 T7902 arg1Of ",",","
R5669 T7899 T7900 arg1Of 20,%
R5670 T7901 T7898 arg2Of Ficoll-400,","
R5671 T7901 T7899 arg1Of Ficoll-400,20
R5672 T7902 T7890 arg2Of ",",","
R5673 T7905 T7902 arg2Of poly,","
R5674 T7905 T7903 arg1Of poly,1
R5675 T7905 T7904 arg1Of poly,µg
R5676 T7905 T7906 arg1Of poly,(
R5677 T7907 T7906 arg2Of dI-dC,(
R5678 T7908 T7906 arg3Of ),(
R5679 T7909 T7929 arg1Of ",",were
R5680 T7909 T7930 arg2Of ",",performed
R5681 T7911 T7910 arg1Of µg,6
R5682 T7911 T7912 arg1Of µg,of
R5683 T7911 T7915 arg1Of µg,and
R5684 T7914 T7912 arg2Of extracts,of
R5685 T7914 T7913 arg1Of extracts,nuclear
R5686 T7915 T7909 arg2Of and,","
R5687 T7915 T7926 arg1Of and,of
R5688 T7916 T7917 arg1Of "10,000",to
R5689 T7918 T7917 arg2Of "20,000",to
R5690 T7919 T7915 arg2Of cpm,and
R5691 T7919 T7916 arg1Of cpm,"10,000"
R5692 T7919 T7920 arg1Of cpm,(
R5693 T7921 T7922 arg1Of 0.05,to
R5694 T7923 T7922 arg2Of 0.2,to
R5695 T7924 T7920 arg2Of ng,(
R5696 T7924 T7921 arg1Of ng,0.05
R5697 T7925 T7920 arg3Of ),(
R5698 T7928 T7926 arg2Of probe,of
R5699 T7928 T7927 arg2Of probe,radiolabelled
R5700 T7930 T7929 arg2Of performed,were
R5701 T7930 T7931 arg1Of performed,for
R5702 T7933 T7931 arg2Of minutes,for
R5703 T7933 T7932 arg1Of minutes,20
R5704 T7933 T7934 arg1Of minutes,at
R5705 T7936 T7934 arg2Of temperature,at
R5706 T7936 T7935 arg1Of temperature,room

GO-MF

Id Subject Object Predicate Lexical cue
T7828 4-11 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7827 0-11 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding

sentences

Id Subject Object Predicate Lexical cue
T7820 0-274 Sentence denotes DNA binding reactions (25 µl) containing 10 mM HEPES pH 7.9, 10 µg/ml BSA, 2 mM DTT, 30% glycerol, 20% Ficoll-400, 1 µg poly (dI-dC), 6 µg of nuclear extracts and 10,000 to 20,000 cpm (0.05 to 0.2 ng) of radiolabelled probe were performed for 20 minutes at room temperature.
T94 0-274 Sentence denotes DNA binding reactions (25 µl) containing 10 mM HEPES pH 7.9, 10 µg/ml BSA, 2 mM DTT, 30% glycerol, 20% Ficoll-400, 1 µg poly (dI-dC), 6 µg of nuclear extracts and 10,000 to 20,000 cpm (0.05 to 0.2 ng) of radiolabelled probe were performed for 20 minutes at room temperature.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8055 180-183 Protein denotes cpm
T8054 85-97 Entity denotes 30% glycerol
T8053 142-158 Entity denotes nuclear extracts
T8051 41-59 Entity denotes 10 mM HEPES pH 7.9
T8040 115-132 Entity denotes 1 µg poly (dI-dC)
T8035 70-98 Entity denotes BSA, 2 mM DTT, 30% glycerol,