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PMC:3589482 / 11841-12102 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6522 260-261 . denotes .
T6521 257-260 NNP denotes LPS
T6520 251-256 JJ denotes ng/ml
T6519 247-250 CD denotes 100
T6518 244-246 IN denotes of
T6517 236-243 NN denotes absence
T6516 233-235 CC denotes or
T6515 224-232 NN denotes presence
T6514 220-223 DT denotes the
T6513 217-219 IN denotes in
T6512 210-216 CC denotes either
T6511 208-209 NNP denotes C
T6510 207-208 CD denotes °
T6509 205-207 CD denotes 37
T6508 202-204 IN denotes at
T6507 191-201 NN denotes atmosphere
T6506 187-190 NN denotes air
T6505 176-186 JJ denotes humidified
T6504 174-175 NN denotes %
T6503 172-174 CD denotes 95
T6502 168-171 CC denotes and
T6501 164-167 CD denotes CO2
T6500 162-163 NN denotes %
T6499 161-162 CD denotes 5
T6498 159-160 DT denotes a
T6497 156-158 IN denotes in
T6496 152-155 NNS denotes hrs
T6495 149-151 CD denotes 16
T6494 139-148 VBD denotes incubated
T6493 135-138 CC denotes and
T6492 129-134 NNS denotes pools
T6491 124-128 NN denotes cell
T6490 114-123 JJ denotes identical
T6489 110-113 CD denotes two
T6488 105-109 IN denotes into
T6487 97-104 VBN denotes divided
T6486 95-96 , denotes ,
T6485 89-95 VBZ denotes plates
T6484 81-88 NN denotes culture
T6483 74-80 NN denotes tissue
T6482 67-73 JJ denotes 6-well
T6481 64-66 IN denotes in
T6480 58-63 NNS denotes media
T6479 47-57 JJ denotes pre-warmed
T6478 44-46 IN denotes of
T6477 41-43 NN denotes ml
T6476 38-40 CD denotes 10
T6475 35-37 TO denotes to
T6474 23-34 VBN denotes transferred
T6473 18-22 VBD denotes were
T6472 12-17 NNS denotes cells
T6471 0-11 JJ denotes Transfected
R4609 T6471 T6472 amod Transfected,cells
R4610 T6472 T6474 nsubjpass cells,transferred
R4611 T6473 T6474 auxpass were,transferred
R4612 T6474 T6474 ROOT transferred,transferred
R4613 T6475 T6474 prep to,transferred
R4614 T6476 T6477 nummod 10,ml
R4615 T6477 T6475 pobj ml,to
R4616 T6478 T6477 prep of,ml
R4617 T6479 T6480 amod pre-warmed,media
R4618 T6480 T6478 pobj media,of
R4619 T6481 T6477 prep in,ml
R4620 T6482 T6484 amod 6-well,culture
R4621 T6483 T6484 compound tissue,culture
R4622 T6484 T6485 compound culture,plates
R4623 T6485 T6481 pobj plates,in
R4624 T6486 T6485 punct ",",plates
R4625 T6487 T6474 conj divided,transferred
R4626 T6488 T6487 prep into,divided
R4627 T6489 T6492 nummod two,pools
R4628 T6490 T6492 amod identical,pools
R4629 T6491 T6492 compound cell,pools
R4630 T6492 T6488 pobj pools,into
R4631 T6493 T6487 cc and,divided
R4632 T6494 T6487 conj incubated,divided
R4633 T6495 T6496 nummod 16,hrs
R4634 T6496 T6494 dobj hrs,incubated
R4635 T6497 T6494 prep in,incubated
R4636 T6498 T6507 det a,atmosphere
R4637 T6499 T6500 nummod 5,%
R4638 T6500 T6507 nmod %,atmosphere
R4639 T6501 T6504 nummod CO2,%
R4640 T6502 T6501 cc and,CO2
R4641 T6503 T6504 nummod 95,%
R4642 T6504 T6507 nmod %,atmosphere
R4643 T6505 T6507 amod humidified,atmosphere
R4644 T6506 T6507 compound air,atmosphere
R4645 T6507 T6497 pobj atmosphere,in
R4646 T6508 T6494 prep at,incubated
R4647 T6509 T6510 nummod 37,°
R4648 T6510 T6508 pobj °,at
R4649 T6511 T6494 conj C,incubated
R4650 T6512 T6513 preconj either,in
R4651 T6513 T6494 prep in,incubated
R4652 T6514 T6515 det the,presence
R4653 T6515 T6513 pobj presence,in
R4654 T6516 T6515 cc or,presence
R4655 T6517 T6515 conj absence,presence
R4656 T6518 T6517 prep of,absence
R4657 T6519 T6521 nummod 100,LPS
R4658 T6520 T6521 amod ng/ml,LPS
R4659 T6521 T6518 pobj LPS,of
R4660 T6522 T6474 punct .,transferred

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6177 257-260 NN denotes LPS
T6176 251-256 NN denotes ng/ml
T6175 247-250 CD denotes 100
T6174 244-246 IN denotes of
T6173 236-243 NN denotes absence
T6172 233-235 CC denotes or
T6171 224-232 NN denotes presence
T6170 220-223 DT denotes the
T6169 217-219 IN denotes in
T6168 210-216 CC denotes either
T6167 205-209 NN denotes 37°C
T6166 202-204 IN denotes at
T6165 191-201 NN denotes atmosphere
T6164 187-190 NN denotes air
T6163 176-186 VB denotes humidified
T6162 174-175 NN denotes %
T6161 172-174 CD denotes 95
T6160 168-171 CC denotes and
T6159 164-167 NN denotes CO2
T6158 162-163 NN denotes %
T6157 161-162 CD denotes 5
T6156 159-160 DT denotes a
T6155 156-158 IN denotes in
T6154 152-155 NN denotes hrs
T6153 149-151 CD denotes 16
T6152 139-148 VB denotes incubated
T6151 135-138 CC denotes and
T6150 129-134 NN denotes pools
T6149 124-128 NN denotes cell
T6148 114-123 JJ denotes identical
T6147 110-113 CD denotes two
T6146 105-109 IN denotes into
T6145 97-104 VB denotes divided
T6144 95-96 -COMMA- denotes ,
T6143 89-95 NN denotes plates
T6142 81-88 NN denotes culture
T6141 74-80 NN denotes tissue
T6140 67-73 JJ denotes 6-well
T6139 64-66 IN denotes in
T6138 58-63 NN denotes media
T6137 47-57 JJ denotes pre-warmed
T6136 44-46 IN denotes of
T6135 41-43 NN denotes ml
T6134 38-40 CD denotes 10
T6133 35-37 TO denotes to
T6132 23-34 VB denotes transferred
T6131 18-22 VB denotes were
T6130 12-17 NN denotes cells
T6129 0-11 VB denotes Transfected
R4369 T6130 T6129 arg2Of cells,Transfected
R4370 T6130 T6131 arg1Of cells,were
R4371 T6130 T6132 arg2Of cells,transferred
R4372 T6132 T6131 arg2Of transferred,were
R4373 T6132 T6133 arg1Of transferred,to
R4374 T6132 T6160 arg1Of transferred,and
R4375 T6135 T6133 arg2Of ml,to
R4376 T6135 T6134 arg1Of ml,10
R4377 T6135 T6136 arg1Of ml,of
R4378 T6135 T6139 arg1Of ml,in
R4379 T6135 T6144 arg1Of ml,","
R4380 T6135 T6145 arg2Of ml,divided
R4381 T6138 T6136 arg2Of media,of
R4382 T6138 T6137 arg1Of media,pre-warmed
R4383 T6143 T6139 arg2Of plates,in
R4384 T6143 T6140 arg1Of plates,6-well
R4385 T6143 T6141 arg1Of plates,tissue
R4386 T6143 T6142 arg1Of plates,culture
R4387 T6145 T6146 arg1Of divided,into
R4388 T6145 T6155 arg1Of divided,in
R4389 T6150 T6147 arg1Of pools,two
R4390 T6150 T6148 arg1Of pools,identical
R4391 T6150 T6149 arg1Of pools,cell
R4392 T6150 T6151 arg1Of pools,and
R4393 T6151 T6146 arg2Of and,into
R4394 T6154 T6151 arg2Of hrs,and
R4395 T6154 T6152 arg2Of hrs,incubated
R4396 T6154 T6153 arg1Of hrs,16
R4397 T6157 T6158 arg1Of 5,%
R4398 T6159 T6155 arg2Of CO2,in
R4399 T6159 T6156 arg1Of CO2,a
R4400 T6159 T6157 arg1Of CO2,5
R4401 T6162 T6161 arg1Of %,95
R4402 T6162 T6163 arg1Of %,humidified
R4403 T6163 T6160 arg2Of humidified,and
R4404 T6163 T6166 arg1Of humidified,at
R4405 T6163 T6169 arg1Of humidified,in
R4406 T6165 T6163 arg2Of atmosphere,humidified
R4407 T6165 T6164 arg1Of atmosphere,air
R4408 T6167 T6166 arg2Of 37°C,at
R4409 T6169 T6168 arg1Of in,either
R4410 T6171 T6172 arg1Of presence,or
R4411 T6172 T6169 arg2Of or,in
R4412 T6172 T6170 arg1Of or,the
R4413 T6172 T6174 arg1Of or,of
R4414 T6173 T6172 arg2Of absence,or
R4415 T6175 T6176 arg1Of 100,ng/ml
R4416 T6177 T6174 arg2Of LPS,of
R4417 T6177 T6175 arg1Of LPS,100

UBERON-AE

Id Subject Object Predicate Lexical cue
T5964 74-80 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue

GO-CC

Id Subject Object Predicate Lexical cue
T6008 124-128 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T6007 12-17 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T5967 0-261 Sentence denotes Transfected cells were transferred to 10 ml of pre-warmed media in 6-well tissue culture plates, divided into two identical cell pools and incubated 16 hrs in a 5% CO2 and 95% humidified air atmosphere at 37°C either in the presence or absence of 100 ng/ml LPS.
T71 0-261 Sentence denotes Transfected cells were transferred to 10 ml of pre-warmed media in 6-well tissue culture plates, divided into two identical cell pools and incubated 16 hrs in a 5% CO2 and 95% humidified air atmosphere at 37°C either in the presence or absence of 100 ng/ml LPS.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T6348 236-260 Entity denotes absence of 100 ng/ml LPS
T6342 110-134 Entity denotes two identical cell pools
T6364 0-17 Entity denotes Transfected cells
T6360 139-167 Protein denotes incubated 16 hrs in a 5% CO2