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PMC:3585731 / 4888-5134 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T825 193-203 Gene_expression denotes production
T824 180-184 Regulation denotes link
T813 188-192 Protein denotes TNFα
T812 67-71 Protein denotes FADD
R499 T813 T825 themeOf TNFα,production
R504 T825 T824 themeOf production,link

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1728 243-245 FW denotes se
T1727 239-242 FW denotes per
T1726 233-238 NN denotes death
T1725 228-232 NN denotes cell
T1724 224-227 IN denotes for
T1723 212-223 JJ denotes dispensible
T1722 209-211 VB denotes is
T1721 205-208 CC denotes but
T1720 203-204 -COMMA- denotes ,
T1719 193-203 NN denotes production
T1718 188-192 NN denotes TNFα
T1717 185-187 TO denotes to
T1716 180-184 NN denotes link
T1715 176-179 JJ denotes key
T1714 174-175 DT denotes a
T1713 165-173 VB denotes provides
T1712 161-164 NN denotes Akt
T1711 149-160 NN denotes fibroblasts
T1710 144-148 NN denotes lung
T1709 138-143 NN denotes mouse
T1708 134-137 CC denotes and
T1707 132-133 -COMMA- denotes ,
T1706 127-132 NN denotes lines
T1705 122-126 NN denotes cell
T1704 111-121 NN denotes macrophage
T1703 104-110 NN denotes J774.1
T1702 100-103 CC denotes and
T1701 96-99 NN denotes RAW
T1700 94-95 -COMMA- denotes ,
T1699 89-94 NN denotes cells
T1698 82-88 NN denotes Jurkat
T1697 72-81 JJ denotes deficient
T1696 67-71 NN denotes FADD
T1695 57-66 VB denotes including
T1694 51-56 NN denotes types
T1693 46-50 NN denotes cell
T1692 40-45 JJ denotes other
T1691 31-39 JJ denotes multiple
T1690 28-30 IN denotes in
T1689 23-27 IN denotes that
T1688 13-22 VB denotes suggested
T1687 8-12 NN denotes data
T1686 0-7 JJ denotes Further
R1135 T1687 T1686 arg1Of data,Further
R1136 T1687 T1688 arg1Of data,suggested
R1137 T1687 T1722 arg1Of data,is
R1138 T1687 T1723 arg1Of data,dispensible
R1139 T1688 T1721 arg1Of suggested,but
R1140 T1694 T1690 arg2Of types,in
R1141 T1694 T1691 arg1Of types,multiple
R1142 T1694 T1692 arg1Of types,other
R1143 T1694 T1693 arg1Of types,cell
R1144 T1694 T1695 arg1Of types,including
R1145 T1699 T1695 arg2Of cells,including
R1146 T1699 T1696 arg1Of cells,FADD
R1147 T1699 T1697 arg1Of cells,deficient
R1148 T1699 T1698 arg1Of cells,Jurkat
R1149 T1701 T1702 arg1Of RAW,and
R1150 T1702 T1708 arg1Of and,and
R1151 T1706 T1702 arg2Of lines,and
R1152 T1706 T1703 arg1Of lines,J774.1
R1153 T1706 T1704 arg1Of lines,macrophage
R1154 T1706 T1705 arg1Of lines,cell
R1155 T1708 T1707 arg1Of and,","
R1156 T1708 T1713 arg1Of and,provides
R1157 T1712 T1708 arg2Of Akt,and
R1158 T1712 T1709 arg1Of Akt,mouse
R1159 T1712 T1710 arg1Of Akt,lung
R1160 T1712 T1711 arg1Of Akt,fibroblasts
R1161 T1713 T1688 arg2Of provides,suggested
R1162 T1713 T1689 arg1Of provides,that
R1163 T1713 T1690 arg1Of provides,in
R1164 T1713 T1700 arg1Of provides,","
R1165 T1716 T1713 arg2Of link,provides
R1166 T1716 T1714 arg1Of link,a
R1167 T1716 T1715 arg1Of link,key
R1168 T1716 T1717 arg1Of link,to
R1169 T1719 T1717 arg2Of production,to
R1170 T1719 T1718 arg1Of production,TNFα
R1171 T1721 T1720 arg1Of but,","
R1172 T1722 T1721 arg2Of is,but
R1173 T1722 T1728 arg1Of is,se
R1174 T1723 T1722 arg2Of dispensible,is
R1175 T1723 T1724 arg1Of dispensible,for
R1176 T1726 T1724 arg2Of death,for
R1177 T1726 T1725 arg1Of death,cell
R1178 T1728 T1727 arg1Of se,per

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T950 188-192 Protein denotes TNFα
T949 67-71 Protein denotes FADD

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1841 161-164 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T1830 161-164 http://www.uniprot.org/uniprot/P31751 denotes Akt
T1819 161-164 http://www.uniprot.org/uniprot/P31749 denotes Akt
T1809 188-192 http://www.uniprot.org/uniprot/P01375 denotes TNFα

UBERON-AE

Id Subject Object Predicate Lexical cue
T879 144-148 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung

GO-BP

Id Subject Object Predicate Lexical cue
T1000 233-238 http://purl.obolibrary.org/obo/GO_0016265 denotes death

GO-CC

Id Subject Object Predicate Lexical cue
T1064 228-232 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1063 122-126 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1062 46-50 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T900 0-246 Sentence denotes Further data suggested that in multiple other cell types including FADD deficient Jurkat cells, RAW and J774.1 macrophage cell lines, and mouse lung fibroblasts Akt provides a key link to TNFα production, but is dispensible for cell death per se.
T34 0-246 Sentence denotes Further data suggested that in multiple other cell types including FADD deficient Jurkat cells, RAW and J774.1 macrophage cell lines, and mouse lung fibroblasts Akt provides a key link to TNFα production, but is dispensible for cell death per se.

simple1

Id Subject Object Predicate Lexical cue
T1084 188-192 Protein denotes TNFα
T1083 67-71 Protein denotes FADD

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1768 188-192 Protein denotes TNFα
T1767 67-71 Protein denotes FADD
T1777 193-203 Gene_expression denotes production
R1205 T1768 T1777 themeOf TNFα,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2152 193-203 Gene_expression denotes production
T2151 180-184 Positive_regulation denotes link
T2150 72-81 Negative_regulation denotes deficient
T2140 188-192 Protein denotes TNFα
T2139 67-71 Protein denotes FADD
R1461 T2139 T2150 themeOf FADD,deficient
R1462 T2140 T2152 themeOf TNFα,production
R1471 T2152 T2151 themeOf production,link

DLUT931

Id Subject Object Predicate Lexical cue
T1901 180-184 Positive_regulation denotes link
T1900 193-203 Gene_expression denotes production
T1899 72-81 Negative_regulation denotes deficient
T1887 188-192 Protein denotes TNFα
T1886 67-71 Protein denotes FADD
R1221 T1886 T1899 themeOf FADD,deficient
R1222 T1887 T1900 themeOf TNFα,production
R1229 T1900 T1901 themeOf production,link

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2797 188-203 Gene_expression denotes TNFα production
T2789 161-164 Protein denotes Akt
T2784 31-95 Entity denotes multiple other cell types including FADD deficient Jurkat cells,
T2774 67-71 Protein denotes FADD
T2768 67-94 Entity denotes FADD deficient Jurkat cells
T2766 188-192 Protein denotes TNFα
T2751 138-160 Entity denotes mouse lung fibroblasts
R1971 T2766 T2797 themeOf TNFα,TNFα production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2651 245-246 . denotes .
T2650 243-245 FW denotes se
T2649 239-242 IN denotes per
T2648 233-238 NN denotes death
T2647 228-232 NN denotes cell
T2646 224-227 IN denotes for
T2645 212-223 JJ denotes dispensible
T2644 209-211 VBZ denotes is
T2643 205-208 CC denotes but
T2642 203-204 , denotes ,
T2641 193-203 NN denotes production
T2640 188-192 VB denotes TNFα
T2639 185-187 TO denotes to
T2638 180-184 NN denotes link
T2637 176-179 JJ denotes key
T2636 174-175 DT denotes a
T2635 165-173 VBZ denotes provides
T2634 161-164 NNP denotes Akt
T2633 149-160 NNS denotes fibroblasts
T2632 144-148 NN denotes lung
T2631 138-143 NN denotes mouse
T2630 134-137 CC denotes and
T2629 132-133 , denotes ,
T2628 127-132 NNS denotes lines
T2627 122-126 NN denotes cell
T2626 111-121 NN denotes macrophage
T2625 108-110 CD denotes .1
T2624 104-108 NNP denotes J774
T2623 100-103 CC denotes and
T2622 96-99 NNP denotes RAW
T2621 94-95 , denotes ,
T2620 89-94 NNS denotes cells
T2619 82-88 NNP denotes Jurkat
T2618 72-81 NN denotes deficient
T2617 67-71 NNP denotes FADD
T2616 57-66 VBG denotes including
T2615 51-56 NNS denotes types
T2614 46-50 NN denotes cell
T2613 40-45 JJ denotes other
T2612 31-39 JJ denotes multiple
T2611 28-30 IN denotes in
T2610 23-27 IN denotes that
T2609 13-22 VBD denotes suggested
T2608 8-12 NNS denotes data
T2607 0-7 JJ denotes Further
R1851 T2607 T2608 amod Further,data
R1854 T2608 T2609 nsubj data,suggested
R1858 T2609 T2609 ROOT suggested,suggested
R1865 T2610 T2635 mark that,provides
R1870 T2611 T2635 prep in,provides
R1873 T2612 T2615 amod multiple,types
R1877 T2613 T2615 amod other,types
R1881 T2614 T2615 compound cell,types
R1884 T2615 T2611 pobj types,in
R1888 T2616 T2615 prep including,types
R1892 T2617 T2620 nmod FADD,cells
R1895 T2618 T2620 amod deficient,cells
R1896 T2619 T2620 compound Jurkat,cells
R1897 T2620 T2616 pobj cells,including
R1898 T2621 T2620 punct ",",cells
R1899 T2622 T2620 conj RAW,cells
R1900 T2623 T2622 cc and,RAW
R1901 T2624 T2622 conj J774,RAW
R1903 T2625 T2628 nummod .1,lines
R1906 T2626 T2628 compound macrophage,lines
R1908 T2627 T2628 compound cell,lines
R1911 T2628 T2620 conj lines,cells
R1912 T2629 T2628 punct ",",lines
R1915 T2630 T2628 cc and,lines
R1916 T2631 T2632 compound mouse,lung
R1917 T2632 T2633 compound lung,fibroblasts
R1918 T2633 T2628 conj fibroblasts,lines
R1921 T2634 T2635 nsubj Akt,provides
R1924 T2635 T2609 ccomp provides,suggested
R1927 T2636 T2638 det a,link
R1929 T2637 T2638 amod key,link
R1930 T2638 T2635 dobj link,provides
R1932 T2639 T2640 aux to,TNFα
R1933 T2640 T2638 relcl TNFα,link
R1934 T2641 T2640 dobj production,TNFα
R1938 T2642 T2609 punct ",",suggested
R1940 T2643 T2609 cc but,suggested
R1941 T2644 T2609 conj is,suggested
R1943 T2645 T2644 acomp dispensible,is
R1944 T2646 T2645 prep for,dispensible
R1945 T2647 T2648 compound cell,death
R1946 T2648 T2646 pobj death,for
R1947 T2649 T2648 prep per,death
R1948 T2650 T2649 pobj se,per
R1949 T2651 T2609 punct .,suggested

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2204 193-203 Gene_expression denotes production
T2203 188-192 Protein denotes TNFα
T2202 67-71 Protein denotes FADD
R1488 T2203 T2204 themeOf TNFα,production

test3

Id Subject Object Predicate Lexical cue
T874 193-203 Gene_expression denotes production
T873 188-192 Protein denotes TNFα
T872 72-81 Negative_regulation denotes deficient
T871 67-71 Protein denotes FADD
T844 188-192 Protein denotes TNFα
T843 67-71 Protein denotes FADD
R511 T871 T872 themeOf FADD,deficient
R512 T873 T874 themeOf TNFα,production