PMC:3585731 / 43000-43090 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/3585731","sourcedb":"PMC","sourceid":"3585731","source_url":"http://www.ncbi.nlm.nih.gov/pmc/3585731","text":"First, what is the mechanism of the RIP1-dependent increase in Akt Thr308 phosphorylation?","tracks":[{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T22921","span":{"begin":36,"end":40},"obj":"http://www.uniprot.org/uniprot/Q13546"},{"id":"T22860","span":{"begin":63,"end":66},"obj":"http://www.uniprot.org/uniprot/P31751"},{"id":"T22826","span":{"begin":63,"end":66},"obj":"http://www.uniprot.org/uniprot/P31749"},{"id":"T22894","span":{"begin":63,"end":66},"obj":"http://www.uniprot.org/uniprot/Q9Y243"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"attributes":[{"subj":"T22921","pred":"source","obj":"bionlp-st-ge-2016-uniprot"},{"subj":"T22860","pred":"source","obj":"bionlp-st-ge-2016-uniprot"},{"subj":"T22826","pred":"source","obj":"bionlp-st-ge-2016-uniprot"},{"subj":"T22894","pred":"source","obj":"bionlp-st-ge-2016-uniprot"}]},{"project":"pmc-enju-pas","denotations":[{"id":"T21571","span":{"begin":74,"end":89},"obj":"NN"},{"id":"T21570","span":{"begin":67,"end":73},"obj":"NN"},{"id":"T21569","span":{"begin":63,"end":66},"obj":"NN"},{"id":"T21568","span":{"begin":60,"end":62},"obj":"IN"},{"id":"T21567","span":{"begin":51,"end":59},"obj":"NN"},{"id":"T21566","span":{"begin":36,"end":50},"obj":"JJ"},{"id":"T21565","span":{"begin":32,"end":35},"obj":"DT"},{"id":"T21564","span":{"begin":29,"end":31},"obj":"IN"},{"id":"T21563","span":{"begin":19,"end":28},"obj":"NN"},{"id":"T21562","span":{"begin":15,"end":18},"obj":"DT"},{"id":"T21561","span":{"begin":12,"end":14},"obj":"VB"},{"id":"T21560","span":{"begin":7,"end":11},"obj":"WP"},{"id":"T21559","span":{"begin":5,"end":6},"obj":"-COMMA-"},{"id":"T21558","span":{"begin":0,"end":5},"obj":"RB"}],"relations":[{"id":"R14205","pred":"arg1Of","subj":"T21560","obj":"T21561"},{"id":"R14206","pred":"arg1Of","subj":"T21561","obj":"T21558"},{"id":"R14207","pred":"arg1Of","subj":"T21561","obj":"T21559"},{"id":"R14208","pred":"arg2Of","subj":"T21563","obj":"T21561"},{"id":"R14209","pred":"arg1Of","subj":"T21563","obj":"T21562"},{"id":"R14210","pred":"arg1Of","subj":"T21563","obj":"T21564"},{"id":"R14211","pred":"arg2Of","subj":"T21567","obj":"T21564"},{"id":"R14212","pred":"arg1Of","subj":"T21567","obj":"T21565"},{"id":"R14213","pred":"arg1Of","subj":"T21567","obj":"T21566"},{"id":"R14214","pred":"arg1Of","subj":"T21567","obj":"T21568"},{"id":"R14215","pred":"arg2Of","subj":"T21571","obj":"T21568"},{"id":"R14216","pred":"arg1Of","subj":"T21571","obj":"T21569"},{"id":"R14217","pred":"arg1Of","subj":"T21571","obj":"T21570"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"attributes":[{"subj":"T21571","pred":"source","obj":"pmc-enju-pas"},{"subj":"T21570","pred":"source","obj":"pmc-enju-pas"},{"subj":"T21569","pred":"source","obj":"pmc-enju-pas"},{"subj":"T21568","pred":"source","obj":"pmc-enju-pas"},{"subj":"T21567","pred":"source","obj":"pmc-enju-pas"},{"subj":"T21566","pred":"source","obj":"pmc-enju-pas"},{"subj":"T21565","pred":"source","obj":"pmc-enju-pas"},{"subj":"T21564","pred":"source","obj":"pmc-enju-pas"},{"subj":"T21563","pred":"source","obj":"pmc-enju-pas"},{"subj":"T21562","pred":"source","obj":"pmc-enju-pas"},{"subj":"T21561","pred":"source","obj":"pmc-enju-pas"},{"subj":"T21560","pred":"source","obj":"pmc-enju-pas"},{"subj":"T21559","pred":"source","obj":"pmc-enju-pas"},{"subj":"T21558","pred":"source","obj":"pmc-enju-pas"}]},{"project":"sentences","denotations":[{"id":"T20942","span":{"begin":0,"end":90},"obj":"Sentence"},{"id":"T267","span":{"begin":0,"end":90},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T20942","pred":"source","obj":"sentences"},{"subj":"T267","pred":"source","obj":"sentences"}]},{"project":"GO-BP","denotations":[{"id":"T21107","span":{"begin":74,"end":89},"obj":"http://purl.obolibrary.org/obo/GO_0016310"}],"attributes":[{"subj":"T21107","pred":"source","obj":"GO-BP"}]},{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T23891","span":{"begin":89,"end":90},"obj":"."},{"id":"T23890","span":{"begin":74,"end":89},"obj":"NN"},{"id":"T23889","span":{"begin":67,"end":73},"obj":"NNP"},{"id":"T23888","span":{"begin":63,"end":66},"obj":"NNP"},{"id":"T23887","span":{"begin":60,"end":62},"obj":"IN"},{"id":"T23886","span":{"begin":51,"end":59},"obj":"NN"},{"id":"T23885","span":{"begin":36,"end":50},"obj":"JJ"},{"id":"T23884","span":{"begin":32,"end":35},"obj":"DT"},{"id":"T23883","span":{"begin":29,"end":31},"obj":"IN"},{"id":"T23882","span":{"begin":19,"end":28},"obj":"NN"},{"id":"T23881","span":{"begin":15,"end":18},"obj":"DT"},{"id":"T23880","span":{"begin":12,"end":14},"obj":"VBZ"},{"id":"T23879","span":{"begin":7,"end":11},"obj":"WP"},{"id":"T23878","span":{"begin":5,"end":6},"obj":","},{"id":"T23877","span":{"begin":0,"end":5},"obj":"RB"}],"relations":[{"id":"R15906","pred":"advmod","subj":"T23877","obj":"T23880"},{"id":"R15907","pred":"punct","subj":"T23878","obj":"T23880"},{"id":"R15908","pred":"attr","subj":"T23879","obj":"T23880"},{"id":"R15909","pred":"ROOT","subj":"T23880","obj":"T23880"},{"id":"R15910","pred":"det","subj":"T23881","obj":"T23882"},{"id":"R15911","pred":"attr","subj":"T23882","obj":"T23880"},{"id":"R15912","pred":"prep","subj":"T23883","obj":"T23882"},{"id":"R15913","pred":"det","subj":"T23884","obj":"T23886"},{"id":"R15914","pred":"amod","subj":"T23885","obj":"T23886"},{"id":"R15915","pred":"pobj","subj":"T23886","obj":"T23883"},{"id":"R15916","pred":"prep","subj":"T23887","obj":"T23886"},{"id":"R15917","pred":"compound","subj":"T23888","obj":"T23890"},{"id":"R15918","pred":"compound","subj":"T23889","obj":"T23890"},{"id":"R15919","pred":"pobj","subj":"T23890","obj":"T23887"},{"id":"R15920","pred":"punct","subj":"T23891","obj":"T23880"}],"attributes":[{"subj":"T23891","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T23890","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T23889","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T23888","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T23887","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T23886","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T23885","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T23884","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T23883","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T23882","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T23881","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T23880","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T23879","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T23878","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T23877","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"}]},{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T21059","span":{"begin":36,"end":40},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"attributes":[{"subj":"T21059","pred":"source","obj":"bionlp-st-ge-2016-test-proteins"}]},{"project":"simple1","denotations":[{"id":"T21311","span":{"begin":36,"end":40},"obj":"Protein"}],"attributes":[{"subj":"T21311","pred":"source","obj":"simple1"}]},{"project":"DLUT931","denotations":[{"id":"T22959","span":{"begin":36,"end":40},"obj":"Protein"}],"attributes":[{"subj":"T22959","pred":"source","obj":"DLUT931"}]},{"project":"BioNLP16_DUT","denotations":[{"id":"T22758","span":{"begin":36,"end":40},"obj":"Protein"}],"attributes":[{"subj":"T22758","pred":"source","obj":"BioNLP16_DUT"}]},{"project":"BioNLP16_Messiy","denotations":[{"id":"T23089","span":{"begin":36,"end":40},"obj":"Protein"}],"attributes":[{"subj":"T23089","pred":"source","obj":"BioNLP16_Messiy"}]},{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T23573","span":{"begin":36,"end":50},"obj":"Protein"},{"id":"T23544","span":{"begin":63,"end":73},"obj":"Entity"},{"id":"T23506","span":{"begin":63,"end":66},"obj":"Protein"},{"id":"T23645","span":{"begin":60,"end":89},"obj":"Phosphorylation"},{"id":"T23633","span":{"begin":32,"end":89},"obj":"Regulation"},{"id":"T23626","span":{"begin":32,"end":89},"obj":"Positive_regulation"}],"relations":[{"id":"R15649","pred":"themeOf","subj":"T23506","obj":"T23645"},{"id":"R15662","pred":"partOf","subj":"T23544","obj":"T23506"},{"id":"R15663","pred":"siteOf","subj":"T23544","obj":"T23645"},{"id":"R15669","pred":"causeOf","subj":"T23573","obj":"T23633"},{"id":"R15679","pred":"themeOf","subj":"T23626","obj":"T23633"},{"id":"R15682","pred":"themeOf","subj":"T23645","obj":"T23626"}],"attributes":[{"subj":"T23573","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T23544","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T23506","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T23645","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T23633","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T23626","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"}]},{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T23202","span":{"begin":41,"end":50},"obj":"Regulation"},{"id":"T23201","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T23200","span":{"begin":74,"end":89},"obj":"Phosphorylation"},{"id":"T23199","span":{"begin":63,"end":66},"obj":"Protein"},{"id":"T23198","span":{"begin":36,"end":40},"obj":"Protein"}],"relations":[{"id":"R15510","pred":"causeOf","subj":"T23198","obj":"T23202"},{"id":"R15511","pred":"themeOf","subj":"T23199","obj":"T23200"},{"id":"R15512","pred":"themeOf","subj":"T23200","obj":"T23201"},{"id":"R15513","pred":"themeOf","subj":"T23201","obj":"T23202"}],"attributes":[{"subj":"T23202","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T23201","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T23200","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T23199","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T23198","pred":"source","obj":"bionlp-st-ge-2016-test-tees"}]},{"project":"testone","denotations":[{"id":"T20780","span":{"begin":74,"end":89},"obj":"Phosphorylation"},{"id":"T20779","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T20778","span":{"begin":41,"end":50},"obj":"Regulation"},{"id":"T20732","span":{"begin":36,"end":40},"obj":"Protein"}],"relations":[{"id":"R13912","pred":"causeOf","subj":"T20732","obj":"T20778"},{"id":"R13928","pred":"themeOf","subj":"T20779","obj":"T20778"},{"id":"R13929","pred":"themeOf","subj":"T20780","obj":"T20779"}],"attributes":[{"subj":"T20780","pred":"source","obj":"testone"},{"subj":"T20779","pred":"source","obj":"testone"},{"subj":"T20778","pred":"source","obj":"testone"},{"subj":"T20732","pred":"source","obj":"testone"}]},{"project":"test3","denotations":[{"id":"T20870","span":{"begin":74,"end":89},"obj":"Phosphorylation"},{"id":"T20869","span":{"begin":51,"end":59},"obj":"Positive_regulation"},{"id":"T20868","span":{"begin":41,"end":50},"obj":"Regulation"},{"id":"T20867","span":{"begin":36,"end":40},"obj":"Protein"},{"id":"T20814","span":{"begin":36,"end":40},"obj":"Protein"}],"relations":[{"id":"R13941","pred":"causeOf","subj":"T20867","obj":"T20868"},{"id":"R13942","pred":"causeOf","subj":"T20867","obj":"T20869"},{"id":"R13943","pred":"themeOf","subj":"T20869","obj":"T20868"},{"id":"R13944","pred":"themeOf","subj":"T20870","obj":"T20869"}],"attributes":[{"subj":"T20870","pred":"source","obj":"test3"},{"subj":"T20869","pred":"source","obj":"test3"},{"subj":"T20868","pred":"source","obj":"test3"},{"subj":"T20867","pred":"source","obj":"test3"},{"subj":"T20814","pred":"source","obj":"test3"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"bionlp-st-ge-2016-uniprot","color":"#ec9394","default":true},{"id":"pmc-enju-pas","color":"#93aeec"},{"id":"sentences","color":"#c8ec93"},{"id":"GO-BP","color":"#ec93e2"},{"id":"bionlp-st-ge-2016-spacy-parsed","color":"#93ecdb"},{"id":"bionlp-st-ge-2016-test-proteins","color":"#ecc193"},{"id":"simple1","color":"#a793ec"},{"id":"DLUT931","color":"#98ec93"},{"id":"BioNLP16_DUT","color":"#ec93b2"},{"id":"BioNLP16_Messiy","color":"#93ccec"},{"id":"bionlp-st-ge-2016-test-ihmc","color":"#e6ec93"},{"id":"bionlp-st-ge-2016-test-tees","color":"#d893ec"},{"id":"testone","color":"#93ecbd"},{"id":"test3","color":"#eca393"}]}]}}