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PMC:3585731 / 43000-43090 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T20780 74-89 Phosphorylation denotes phosphorylation
T20779 51-59 Positive_regulation denotes increase
T20778 41-50 Regulation denotes dependent
T20732 36-40 Protein denotes RIP1
R13912 T20732 T20778 causeOf RIP1,dependent
R13928 T20779 T20778 themeOf increase,dependent
R13929 T20780 T20779 themeOf phosphorylation,increase

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T21571 74-89 NN denotes phosphorylation
T21570 67-73 NN denotes Thr308
T21569 63-66 NN denotes Akt
T21568 60-62 IN denotes in
T21567 51-59 NN denotes increase
T21566 36-50 JJ denotes RIP1-dependent
T21565 32-35 DT denotes the
T21564 29-31 IN denotes of
T21563 19-28 NN denotes mechanism
T21562 15-18 DT denotes the
T21561 12-14 VB denotes is
T21560 7-11 WP denotes what
T21559 5-6 -COMMA- denotes ,
T21558 0-5 RB denotes First
R14205 T21560 T21561 arg1Of what,is
R14206 T21561 T21558 arg1Of is,First
R14207 T21561 T21559 arg1Of is,","
R14208 T21563 T21561 arg2Of mechanism,is
R14209 T21563 T21562 arg1Of mechanism,the
R14210 T21563 T21564 arg1Of mechanism,of
R14211 T21567 T21564 arg2Of increase,of
R14212 T21567 T21565 arg1Of increase,the
R14213 T21567 T21566 arg1Of increase,RIP1-dependent
R14214 T21567 T21568 arg1Of increase,in
R14215 T21571 T21568 arg2Of phosphorylation,in
R14216 T21571 T21569 arg1Of phosphorylation,Akt
R14217 T21571 T21570 arg1Of phosphorylation,Thr308

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T21059 36-40 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22921 36-40 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T22860 63-66 http://www.uniprot.org/uniprot/P31751 denotes Akt
T22826 63-66 http://www.uniprot.org/uniprot/P31749 denotes Akt
T22894 63-66 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T21107 74-89 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T20942 0-90 Sentence denotes First, what is the mechanism of the RIP1-dependent increase in Akt Thr308 phosphorylation?
T267 0-90 Sentence denotes First, what is the mechanism of the RIP1-dependent increase in Akt Thr308 phosphorylation?

simple1

Id Subject Object Predicate Lexical cue
T21311 36-40 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22758 36-40 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T23089 36-40 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T22959 36-40 Protein denotes RIP1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T23573 36-50 Protein denotes RIP1-dependent
T23544 63-73 Entity denotes Akt Thr308
T23506 63-66 Protein denotes Akt
T23645 60-89 Phosphorylation denotes in Akt Thr308 phosphorylation
T23633 32-89 Regulation denotes the RIP1-dependent increase in Akt Thr308 phosphorylation
T23626 32-89 Positive_regulation denotes the RIP1-dependent increase in Akt Thr308 phosphorylation
R15649 T23506 T23645 themeOf Akt,in Akt Thr308 phosphorylation
R15662 T23544 T23506 partOf Akt Thr308,Akt
R15663 T23544 T23645 siteOf Akt Thr308,in Akt Thr308 phosphorylation
R15669 T23573 T23633 causeOf RIP1-dependent,the RIP1-dependent increase in Akt Thr308 phosphorylation
R15679 T23626 T23633 themeOf the RIP1-dependent increase in Akt Thr308 phosphorylation,the RIP1-dependent increase in Akt Thr308 phosphorylation
R15682 T23645 T23626 themeOf in Akt Thr308 phosphorylation,the RIP1-dependent increase in Akt Thr308 phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T23891 89-90 . denotes ?
T23890 74-89 NN denotes phosphorylation
T23889 67-73 NNP denotes Thr308
T23888 63-66 NNP denotes Akt
T23887 60-62 IN denotes in
T23886 51-59 NN denotes increase
T23885 36-50 JJ denotes RIP1-dependent
T23884 32-35 DT denotes the
T23883 29-31 IN denotes of
T23882 19-28 NN denotes mechanism
T23881 15-18 DT denotes the
T23880 12-14 VBZ denotes is
T23879 7-11 WP denotes what
T23878 5-6 , denotes ,
T23877 0-5 RB denotes First
R15906 T23877 T23880 advmod First,is
R15907 T23878 T23880 punct ",",is
R15908 T23879 T23880 attr what,is
R15909 T23880 T23880 ROOT is,is
R15910 T23881 T23882 det the,mechanism
R15911 T23882 T23880 attr mechanism,is
R15912 T23883 T23882 prep of,mechanism
R15913 T23884 T23886 det the,increase
R15914 T23885 T23886 amod RIP1-dependent,increase
R15915 T23886 T23883 pobj increase,of
R15916 T23887 T23886 prep in,increase
R15917 T23888 T23890 compound Akt,phosphorylation
R15918 T23889 T23890 compound Thr308,phosphorylation
R15919 T23890 T23887 pobj phosphorylation,in
R15920 T23891 T23880 punct ?,is

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23202 41-50 Regulation denotes dependent
T23201 51-59 Positive_regulation denotes increase
T23200 74-89 Phosphorylation denotes phosphorylation
T23199 63-66 Protein denotes Akt
T23198 36-40 Protein denotes RIP1
R15510 T23198 T23202 causeOf RIP1,dependent
R15511 T23199 T23200 themeOf Akt,phosphorylation
R15512 T23200 T23201 themeOf phosphorylation,increase
R15513 T23201 T23202 themeOf increase,dependent

test3

Id Subject Object Predicate Lexical cue
T20870 74-89 Phosphorylation denotes phosphorylation
T20869 51-59 Positive_regulation denotes increase
T20868 41-50 Regulation denotes dependent
T20867 36-40 Protein denotes RIP1
T20814 36-40 Protein denotes RIP1
R13941 T20867 T20868 causeOf RIP1,dependent
R13942 T20867 T20869 causeOf RIP1,increase
R13943 T20869 T20868 themeOf increase,dependent
R13944 T20870 T20869 themeOf phosphorylation,increase