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PMC:3585731 / 41618-41834 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T20767 190-205 Phosphorylation denotes phosphorylation
T20766 174-182 Positive_regulation denotes increase
T20725 105-109 Protein denotes RIP1
R13925 T20767 T20766 themeOf phosphorylation,increase

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T21377 209-215 NN denotes Thr308
T21376 206-208 IN denotes on
T21375 190-205 NN denotes phosphorylation
T21374 186-189 NN denotes Akt
T21373 183-185 IN denotes in
T21372 174-182 NN denotes increase
T21371 164-173 JJ denotes selective
T21370 162-163 DT denotes a
T21369 152-161 VB denotes promoting
T21368 144-151 IN denotes through
T21367 135-143 NN denotes activity
T21366 131-134 PRP-DOLLAR- denotes its
T21365 124-130 VB denotes exerts
T21364 118-123 WDT denotes which
T21363 116-117 -COMMA- denotes ,
T21362 110-116 NN denotes kinase
T21361 105-109 NN denotes RIP1
T21360 100-104 IN denotes from
T21359 89-99 RB denotes downstream
T21358 79-88 NN denotes signaling
T21357 75-78 DT denotes the
T21356 72-74 IN denotes in
T21355 64-71 VB denotes engaged
T21354 51-63 RB denotes specifically
T21353 48-50 VB denotes is
T21352 41-47 NN denotes kinase
T21351 37-40 NN denotes Akt
T21350 32-36 IN denotes that
T21349 24-31 VB denotes suggest
T21348 16-23 NN denotes results
T21347 12-15 PRP-DOLLAR- denotes our
T21346 10-11 -COMMA- denotes ,
T21345 0-10 RB denotes Altogether
R13990 T21348 T21347 arg1Of results,our
R13991 T21348 T21349 arg1Of results,suggest
R13992 T21349 T21345 arg1Of suggest,Altogether
R13993 T21349 T21346 arg1Of suggest,","
R13994 T21352 T21351 arg1Of kinase,Akt
R13995 T21352 T21353 arg1Of kinase,is
R13996 T21352 T21355 arg2Of kinase,engaged
R13997 T21355 T21349 arg2Of engaged,suggest
R13998 T21355 T21350 arg1Of engaged,that
R13999 T21355 T21353 arg2Of engaged,is
R14000 T21355 T21354 arg1Of engaged,specifically
R14001 T21355 T21356 arg1Of engaged,in
R14002 T21355 T21360 arg1Of engaged,from
R14003 T21358 T21356 arg2Of signaling,in
R14004 T21358 T21357 arg1Of signaling,the
R14005 T21360 T21359 arg1Of from,downstream
R14006 T21362 T21360 arg2Of kinase,from
R14007 T21362 T21361 arg1Of kinase,RIP1
R14008 T21362 T21363 arg1Of kinase,","
R14009 T21362 T21364 arg1Of kinase,which
R14010 T21362 T21365 arg1Of kinase,exerts
R14011 T21365 T21368 arg1Of exerts,through
R14012 T21367 T21365 arg2Of activity,exerts
R14013 T21367 T21366 arg1Of activity,its
R14014 T21369 T21368 arg2Of promoting,through
R14015 T21372 T21369 arg2Of increase,promoting
R14016 T21372 T21370 arg1Of increase,a
R14017 T21372 T21371 arg1Of increase,selective
R14018 T21372 T21373 arg1Of increase,in
R14019 T21372 T21376 arg1Of increase,on
R14020 T21375 T21373 arg2Of phosphorylation,in
R14021 T21375 T21374 arg1Of phosphorylation,Akt
R14022 T21377 T21376 arg2Of Thr308,on

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T21052 105-109 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22918 105-109 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T22817 186-189 http://www.uniprot.org/uniprot/P31749 denotes Akt
T22816 37-40 http://www.uniprot.org/uniprot/P31749 denotes Akt
T22885 186-189 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T22884 37-40 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T22851 186-189 http://www.uniprot.org/uniprot/P31751 denotes Akt
T22850 37-40 http://www.uniprot.org/uniprot/P31751 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T21103 190-205 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T21093 79-88 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

sentences

Id Subject Object Predicate Lexical cue
T20934 0-216 Sentence denotes Altogether, our results suggest that Akt kinase is specifically engaged in the signaling downstream from RIP1 kinase, which exerts its activity through promoting a selective increase in Akt phosphorylation on Thr308.
T258 0-216 Sentence denotes Altogether, our results suggest that Akt kinase is specifically engaged in the signaling downstream from RIP1 kinase, which exerts its activity through promoting a selective increase in Akt phosphorylation on Thr308.

simple1

Id Subject Object Predicate Lexical cue
T21304 105-109 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22751 105-109 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T23082 105-109 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T22952 105-109 Protein denotes RIP1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T23552 37-40 Protein denotes Akt
T23539 206-215 Entity denotes on Thr308
T23517 37-47 Protein denotes Akt kinase
T23488 186-189 Protein denotes Akt
T23634 152-215 Positive_regulation denotes promoting a selective increase in Akt phosphorylation on Thr308
T23632 162-215 Positive_regulation denotes a selective increase in Akt phosphorylation on Thr308
T23598 105-109 Protein denotes RIP1
T23597 51-116 Protein denotes specifically engaged in the signaling downstream from RIP1 kinase
R15681 T23632 T23634 themeOf a selective increase in Akt phosphorylation on Thr308,promoting a selective increase in Akt phosphorylation on Thr308

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T23688 215-216 . denotes .
T23687 209-215 NNP denotes Thr308
T23686 206-208 IN denotes on
T23685 190-205 NN denotes phosphorylation
T23684 186-189 NNP denotes Akt
T23683 183-185 IN denotes in
T23682 174-182 NN denotes increase
T23681 164-173 JJ denotes selective
T23680 162-163 DT denotes a
T23679 152-161 VBG denotes promoting
T23678 144-151 IN denotes through
T23677 135-143 NN denotes activity
T23676 131-134 PRP$ denotes its
T23675 124-130 VBZ denotes exerts
T23674 118-123 WDT denotes which
T23673 116-117 , denotes ,
T23672 110-116 NN denotes kinase
T23671 105-109 CD denotes RIP1
T23670 100-104 IN denotes from
T23669 89-99 JJ denotes downstream
T23668 79-88 VBG denotes signaling
T23667 75-78 DT denotes the
T23666 72-74 IN denotes in
T23665 64-71 VBN denotes engaged
T23664 51-63 RB denotes specifically
T23663 48-50 VBZ denotes is
T23662 41-47 NN denotes kinase
T23661 37-40 NNP denotes Akt
T23660 32-36 IN denotes that
T23659 24-31 VBP denotes suggest
T23658 16-23 NNS denotes results
T23657 12-15 PRP$ denotes our
T23656 10-11 , denotes ,
T23655 0-10 RB denotes Altogether
R15684 T23655 T23659 advmod Altogether,suggest
R15685 T23656 T23659 punct ",",suggest
R15686 T23657 T23658 poss our,results
R15687 T23658 T23659 nsubj results,suggest
R15688 T23659 T23659 ROOT suggest,suggest
R15689 T23660 T23665 mark that,engaged
R15690 T23661 T23662 compound Akt,kinase
R15691 T23662 T23665 nsubjpass kinase,engaged
R15692 T23663 T23665 auxpass is,engaged
R15693 T23664 T23665 advmod specifically,engaged
R15694 T23665 T23659 ccomp engaged,suggest
R15695 T23666 T23665 prep in,engaged
R15696 T23667 T23669 det the,downstream
R15697 T23668 T23669 amod signaling,downstream
R15698 T23669 T23666 pobj downstream,in
R15699 T23670 T23665 prep from,engaged
R15700 T23671 T23672 nummod RIP1,kinase
R15701 T23672 T23670 pobj kinase,from
R15702 T23673 T23672 punct ",",kinase
R15703 T23674 T23675 nsubj which,exerts
R15704 T23675 T23672 relcl exerts,kinase
R15705 T23676 T23677 poss its,activity
R15706 T23677 T23675 dobj activity,exerts
R15707 T23678 T23675 prep through,exerts
R15708 T23679 T23678 pcomp promoting,through
R15709 T23680 T23682 det a,increase
R15710 T23681 T23682 amod selective,increase
R15711 T23682 T23679 dobj increase,promoting
R15712 T23683 T23682 prep in,increase
R15713 T23684 T23685 compound Akt,phosphorylation
R15714 T23685 T23683 pobj phosphorylation,in
R15715 T23686 T23682 prep on,increase
R15716 T23687 T23686 pobj Thr308,on
R15717 T23688 T23659 punct .,suggest

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23155 174-182 Positive_regulation denotes increase
T23154 174-182 Positive_regulation denotes increase
T23153 190-205 Phosphorylation denotes phosphorylation
T23152 190-205 Phosphorylation denotes phosphorylation
T23151 64-71 Binding denotes engaged
T23150 209-215 Protein denotes Thr308
T23149 186-189 Protein denotes Akt
T23148 105-116 Protein denotes RIP1 kinase
T23147 37-47 Protein denotes Akt kinase
R15481 T23147 T23151 themeOf Akt kinase,engaged
R15482 T23149 T23152 themeOf Akt,phosphorylation
R15483 T23150 T23153 themeOf Thr308,phosphorylation
R15484 T23152 T23154 themeOf phosphorylation,increase
R15485 T23153 T23155 themeOf phosphorylation,increase

test3

Id Subject Object Predicate Lexical cue
T20851 190-205 Phosphorylation denotes phosphorylation
T20850 174-182 Positive_regulation denotes increase
T20849 152-161 Positive_regulation denotes promoting
T20848 105-109 Protein denotes RIP1
T20807 105-109 Protein denotes RIP1
R13935 T20850 T20849 themeOf increase,promoting
R13936 T20851 T20850 themeOf phosphorylation,increase