PMC:3585731 / 39990-41605 JSONTXT

Annnotations TAB JSON ListView MergeView

    testone

    {"project":"testone","denotations":[{"id":"T18170","span":{"begin":394,"end":398},"obj":"Protein"},{"id":"T18169","span":{"begin":295,"end":300},"obj":"Protein"},{"id":"T18168","span":{"begin":212,"end":213},"obj":"Protein"},{"id":"T18167","span":{"begin":207,"end":211},"obj":"Protein"},{"id":"T18166","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T18165","span":{"begin":129,"end":133},"obj":"Protein"},{"id":"T18219","span":{"begin":1417,"end":1432},"obj":"Phosphorylation"},{"id":"T18218","span":{"begin":1184,"end":1193},"obj":"Regulation"},{"id":"T18217","span":{"begin":1064,"end":1072},"obj":"Positive_regulation"},{"id":"T18216","span":{"begin":988,"end":998},"obj":"Positive_regulation"},{"id":"T18215","span":{"begin":882,"end":891},"obj":"Regulation"},{"id":"T18214","span":{"begin":832,"end":839},"obj":"Negative_regulation"},{"id":"T18213","span":{"begin":812,"end":827},"obj":"Phosphorylation"},{"id":"T18212","span":{"begin":757,"end":766},"obj":"Negative_regulation"},{"id":"T18211","span":{"begin":399,"end":409},"obj":"Gene_expression"},{"id":"T18210","span":{"begin":381,"end":390},"obj":"Negative_regulation"},{"id":"T18209","span":{"begin":276,"end":291},"obj":"Phosphorylation"},{"id":"T18208","span":{"begin":261,"end":271},"obj":"Negative_regulation"},{"id":"T18207","span":{"begin":222,"end":237},"obj":"Phosphorylation"},{"id":"T18206","span":{"begin":194,"end":203},"obj":"Negative_regulation"},{"id":"T18179","span":{"begin":1436,"end":1441},"obj":"Protein"},{"id":"T18178","span":{"begin":1277,"end":1282},"obj":"Protein"},{"id":"T18177","span":{"begin":1150,"end":1154},"obj":"Protein"},{"id":"T18176","span":{"begin":1097,"end":1102},"obj":"Protein"},{"id":"T18175","span":{"begin":922,"end":927},"obj":"Protein"},{"id":"T18174","span":{"begin":892,"end":896},"obj":"Protein"},{"id":"T18173","span":{"begin":745,"end":750},"obj":"Protein"},{"id":"T18172","span":{"begin":672,"end":676},"obj":"Protein"},{"id":"T18171","span":{"begin":637,"end":642},"obj":"Protein"}],"relations":[{"id":"R12087","pred":"themeOf","subj":"T18167","obj":"T18206"},{"id":"R12088","pred":"themeOf","subj":"T18168","obj":"T18206"},{"id":"R12089","pred":"themeOf","subj":"T18169","obj":"T18209"},{"id":"R12090","pred":"themeOf","subj":"T18170","obj":"T18211"},{"id":"R12091","pred":"themeOf","subj":"T18173","obj":"T18212"},{"id":"R12092","pred":"causeOf","subj":"T18175","obj":"T18215"},{"id":"R12093","pred":"themeOf","subj":"T18176","obj":"T18217"},{"id":"R12094","pred":"themeOf","subj":"T18179","obj":"T18219"},{"id":"R12103","pred":"themeOf","subj":"T18209","obj":"T18208"},{"id":"R12104","pred":"themeOf","subj":"T18211","obj":"T18210"},{"id":"R12105","pred":"themeOf","subj":"T18213","obj":"T18214"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    2_test

    {"project":"2_test","denotations":[{"id":"23469174-22037377-90505457","span":{"begin":105,"end":107},"obj":"22037377"},{"id":"23469174-20539307-90505458","span":{"begin":688,"end":690},"obj":"20539307"},{"id":"23469174-15131264-90505459","span":{"begin":694,"end":696},"obj":"15131264"},{"id":"23469174-22695613-90505460","span":{"begin":700,"end":702},"obj":"22695613"},{"id":"23469174-19118012-90505461","span":{"begin":1480,"end":1482},"obj":"19118012"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    pmc-enju-pas

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19190","obj":"T19202"},{"id":"R12849","pred":"arg1Of","subj":"T19190","obj":"T19203"},{"id":"R12850","pred":"arg1Of","subj":"T19190","obj":"T19205"},{"id":"R12851","pred":"arg1Of","subj":"T19190","obj":"T19224"},{"id":"R12852","pred":"arg2Of","subj":"T19192","obj":"T19191"},{"id":"R12853","pred":"arg1Of","subj":"T19192","obj":"T19193"},{"id":"R12854","pred":"arg1Of","subj":"T19192","obj":"T19201"},{"id":"R12855","pred":"arg2Of","subj":"T19196","obj":"T19193"},{"id":"R12856","pred":"arg1Of","subj":"T19196","obj":"T19194"},{"id":"R12857","pred":"arg1Of","subj":"T19196","obj":"T19195"},{"id":"R12858","pred":"arg1Of","subj":"T19196","obj":"T19197"},{"id":"R12859","pred":"arg2Of","subj":"T19199","obj":"T19197"},{"id":"R12860","pred":"arg1Of","subj":"T19199","obj":"T19198"},{"id":"R12861","pred":"arg2Of","subj":"T19201","obj":"T19188"},{"id":"R12862","pred":"arg1Of","subj":"T19201","obj":"T19200"},{"id":"R12863","pred":"arg2Of","subj":"T19203","obj":"T19201"},{"id":"R12864","pred":"arg2Of","subj":"T19203","obj":"T19202"},{"id":"R12865","pred":"arg1Of","subj":"T19205","obj":"T19204"},{"id":"R12866","pred":"arg1Of","subj":"T19205","obj":"T19206"},{"id":"R12867","pred":"arg1Of","subj":"T19205","obj":"T19223"},{"id":"R12868","pred":"arg1Of","subj":"T19208","obj":"T19207"},{"id":"R12869","pred":"arg1Of","subj":"T19208","obj":"T19209"},{"id":"R12870","pred":"arg1Of","subj":"T19208","obj":"T19211"},{"id":"R12871","pred":"arg1Of","subj":"T19208","obj":"T19217"},{"id":"R12872","pred":"arg1Of","subj":"T19208","obj":"T19218"},{"id":"R12873","pred":"arg2Of","subj":"T19210","obj":"T19209"},{"id":"R12874","pred":"arg2Of","subj":"T19213","obj":"T19211"},{"id":"R12875","pred":"arg1Of","subj":"T19213","obj":"T19212"},{"id":"R12876","pred":"arg1Of","subj":"T19213","obj":"T19214"},{"id":"R12877","pred":"arg1Of","subj":"T19214","obj":"T19215"},{"id":"R12878","pred":"arg2Of","subj":"T19216","obj":"T19215"},{"id":"R12879","pred":"arg2Of","subj":"T19218","obj":"T19206"},{"id":"R12880","pred":"arg2Of","subj":"T19218","obj":"T19217"},{"id":"R12881","pred":"arg1Of","subj":"T19218","obj":"T19219"},{"id":"R12882","pred":"arg2Of","subj":"T19220","obj":"T19219"},{"id":"R12883","pred":"arg3Of","subj":"T19221","obj":"T19219"},{"id":"R12884","pred":"arg3Of","subj":"T19222","obj":"T19206"},{"id":"R12885","pred":"arg2Of","subj":"T19223","obj":"T19203"},{"id":"R12886","pred":"arg2Of","subj":"T19224","obj":"T19223"},{"id":"R12887","pred":"arg1Of","subj":"T19224","obj":"T19225"},{"id":"R12888","pred":"arg2Of","subj":"T19227","obj":"T19226"},{"id":"R12889","pred":"arg1Of","subj":"T19229","obj":"T19230"},{"id":"R12890","pred":"arg1Of","subj":"T19229","obj":"T19232"},{"id":"R12891","pred":"arg1Of","subj":"T19229","obj":"T19235"},{"id":"R12892","pred":"arg1Of","subj":"T19230","obj":"T19226"},{"id":"R12893","pred":"arg1Of","subj":"T19230","obj":"T19228"},{"id":"R12894","pred":"arg2Of","subj":"T19232","obj":"T19230"},{"id":"R12895","pred":"arg1Of","subj":"T19232","obj":"T19231"},{"id":"R12896","pred":"arg1Of","subj":"T19232","obj":"T19234"},{"id":"R12897","pred":"arg2Of","subj":"T19233","obj":"T19232"},{"id":"R12898","pred":"arg2Of","subj":"T19235","obj":"T19234"},{"id":"R12899","pred":"arg2Of","subj":"T19236","obj":"T19235"},{"id":"R12900","pred":"arg1Of","subj":"T19236","obj":"T19237"},{"id":"R12901","pred":"arg1Of","subj":"T19237","obj":"T19238"},{"id":"R12902","pred":"arg2Of","subj":"T19241","obj":"T19238"},{"id":"R12903","pred":"arg1Of","subj":"T19241","obj":"T19239"},{"id":"R12904","pred":"arg1Of","subj":"T19241","obj":"T19240"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    bionlp-st-ge-2016-coref

    {"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T18387","span":{"begin":1064,"end":1072},"obj":"Antecedent"},{"id":"T18386","span":{"begin":1156,"end":1161},"obj":"Anaphor"}],"relations":[{"id":"R12163","pred":"boundBy","subj":"T18386","obj":"T18387"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T18413","span":{"begin":1436,"end":1441},"obj":"Protein"},{"id":"T18412","span":{"begin":1277,"end":1282},"obj":"Protein"},{"id":"T18411","span":{"begin":1150,"end":1154},"obj":"Protein"},{"id":"T18410","span":{"begin":1097,"end":1102},"obj":"Protein"},{"id":"T18409","span":{"begin":922,"end":927},"obj":"Protein"},{"id":"T18408","span":{"begin":892,"end":896},"obj":"Protein"},{"id":"T18407","span":{"begin":745,"end":750},"obj":"Protein"},{"id":"T18406","span":{"begin":672,"end":676},"obj":"Protein"},{"id":"T18405","span":{"begin":637,"end":642},"obj":"Protein"},{"id":"T18404","span":{"begin":394,"end":398},"obj":"Protein"},{"id":"T18403","span":{"begin":295,"end":300},"obj":"Protein"},{"id":"T18402","span":{"begin":212,"end":213},"obj":"Protein"},{"id":"T18401","span":{"begin":207,"end":211},"obj":"Protein"},{"id":"T18400","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T18399","span":{"begin":129,"end":133},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T19398","span":{"begin":1179,"end":1183},"obj":"http://www.uniprot.org/uniprot/P42345"},{"id":"T19397","span":{"begin":1436,"end":1441},"obj":"http://www.uniprot.org/uniprot/P05412"},{"id":"T19396","span":{"begin":1277,"end":1282},"obj":"http://www.uniprot.org/uniprot/P05412"},{"id":"T19395","span":{"begin":1097,"end":1102},"obj":"http://www.uniprot.org/uniprot/P05412"},{"id":"T19394","span":{"begin":922,"end":927},"obj":"http://www.uniprot.org/uniprot/P05412"},{"id":"T19393","span":{"begin":745,"end":750},"obj":"http://www.uniprot.org/uniprot/P05412"},{"id":"T19392","span":{"begin":637,"end":642},"obj":"http://www.uniprot.org/uniprot/P05412"},{"id":"T19391","span":{"begin":295,"end":300},"obj":"http://www.uniprot.org/uniprot/P05412"},{"id":"T19390","span":{"begin":1150,"end":1154},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T19389","span":{"begin":892,"end":896},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T19388","span":{"begin":672,"end":676},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T19387","span":{"begin":394,"end":398},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T19384","span":{"begin":1171,"end":1174},"obj":"http://www.uniprot.org/uniprot/Q9Y243"},{"id":"T19383","span":{"begin":1002,"end":1005},"obj":"http://www.uniprot.org/uniprot/Q9Y243"},{"id":"T19382","span":{"begin":241,"end":244},"obj":"http://www.uniprot.org/uniprot/Q9Y243"},{"id":"T19362","span":{"begin":1171,"end":1174},"obj":"http://www.uniprot.org/uniprot/P31751"},{"id":"T19361","span":{"begin":1002,"end":1005},"obj":"http://www.uniprot.org/uniprot/P31751"},{"id":"T19340","span":{"begin":1171,"end":1174},"obj":"http://www.uniprot.org/uniprot/P31749"},{"id":"T19339","span":{"begin":1002,"end":1005},"obj":"http://www.uniprot.org/uniprot/P31749"},{"id":"T19338","span":{"begin":241,"end":244},"obj":"http://www.uniprot.org/uniprot/P31749"},{"id":"T19360","span":{"begin":241,"end":244},"obj":"http://www.uniprot.org/uniprot/P31751"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T18468","span":{"begin":677,"end":686},"obj":"http://purl.obolibrary.org/obo/GO_0009058"},{"id":"T18466","span":{"begin":418,"end":423},"obj":"http://purl.obolibrary.org/obo/GO_0016265"},{"id":"T18462","span":{"begin":413,"end":423},"obj":"http://purl.obolibrary.org/obo/GO_0008219"},{"id":"T18453","span":{"begin":1417,"end":1432},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T18452","span":{"begin":812,"end":827},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T18451","span":{"begin":276,"end":291},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T18450","span":{"begin":222,"end":237},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T18442","span":{"begin":1299,"end":1310},"obj":"http://purl.obolibrary.org/obo/GO_0097528"},{"id":"T18441","span":{"begin":863,"end":874},"obj":"http://purl.obolibrary.org/obo/GO_0097528"},{"id":"T18440","span":{"begin":646,"end":657},"obj":"http://purl.obolibrary.org/obo/GO_0097528"},{"id":"T18434","span":{"begin":850,"end":874},"obj":"http://purl.obolibrary.org/obo/GO_0070266"},{"id":"T18432","span":{"begin":863,"end":874},"obj":"http://purl.obolibrary.org/obo/GO_0070266"},{"id":"T18431","span":{"begin":646,"end":657},"obj":"http://purl.obolibrary.org/obo/GO_0070266"},{"id":"T18421","span":{"begin":1318,"end":1321},"obj":"http://purl.obolibrary.org/obo/GO_0004705"},{"id":"T18420","span":{"begin":569,"end":572},"obj":"http://purl.obolibrary.org/obo/GO_0004705"},{"id":"T18419","span":{"begin":85,"end":88},"obj":"http://purl.obolibrary.org/obo/GO_0004705"},{"id":"T18418","span":{"begin":70,"end":73},"obj":"http://purl.obolibrary.org/obo/GO_0004705"},{"id":"T18417","span":{"begin":34,"end":37},"obj":"http://purl.obolibrary.org/obo/GO_0004705"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T18478","span":{"begin":1318,"end":1321},"obj":"http://purl.obolibrary.org/obo/GO_0004705"},{"id":"T18477","span":{"begin":569,"end":572},"obj":"http://purl.obolibrary.org/obo/GO_0004705"},{"id":"T18476","span":{"begin":85,"end":88},"obj":"http://purl.obolibrary.org/obo/GO_0004705"},{"id":"T18475","span":{"begin":70,"end":73},"obj":"http://purl.obolibrary.org/obo/GO_0004705"},{"id":"T18474","span":{"begin":34,"end":37},"obj":"http://purl.obolibrary.org/obo/GO_0004705"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T18486","span":{"begin":1127,"end":1132},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    sentences

    {"project":"sentences","denotations":[{"id":"T18334","span":{"begin":1514,"end":1615},"obj":"Sentence"},{"id":"T18333","span":{"begin":1207,"end":1513},"obj":"Sentence"},{"id":"T18332","span":{"begin":876,"end":1206},"obj":"Sentence"},{"id":"T18331","span":{"begin":782,"end":875},"obj":"Sentence"},{"id":"T18330","span":{"begin":585,"end":781},"obj":"Sentence"},{"id":"T18329","span":{"begin":350,"end":584},"obj":"Sentence"},{"id":"T18328","span":{"begin":158,"end":349},"obj":"Sentence"},{"id":"T18327","span":{"begin":0,"end":157},"obj":"Sentence"},{"id":"T248","span":{"begin":0,"end":157},"obj":"Sentence"},{"id":"T249","span":{"begin":158,"end":349},"obj":"Sentence"},{"id":"T250","span":{"begin":350,"end":584},"obj":"Sentence"},{"id":"T251","span":{"begin":585,"end":781},"obj":"Sentence"},{"id":"T252","span":{"begin":782,"end":875},"obj":"Sentence"},{"id":"T253","span":{"begin":876,"end":1006},"obj":"Sentence"},{"id":"T254","span":{"begin":1007,"end":1206},"obj":"Sentence"},{"id":"T255","span":{"begin":1207,"end":1513},"obj":"Sentence"},{"id":"T256","span":{"begin":1514,"end":1615},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    simple1

    {"project":"simple1","denotations":[{"id":"T18516","span":{"begin":1436,"end":1441},"obj":"Protein"},{"id":"T18515","span":{"begin":1277,"end":1282},"obj":"Protein"},{"id":"T18514","span":{"begin":1150,"end":1154},"obj":"Protein"},{"id":"T18513","span":{"begin":1097,"end":1102},"obj":"Protein"},{"id":"T18512","span":{"begin":922,"end":927},"obj":"Protein"},{"id":"T18511","span":{"begin":892,"end":896},"obj":"Protein"},{"id":"T18510","span":{"begin":745,"end":750},"obj":"Protein"},{"id":"T18509","span":{"begin":672,"end":676},"obj":"Protein"},{"id":"T18508","span":{"begin":637,"end":642},"obj":"Protein"},{"id":"T18507","span":{"begin":394,"end":398},"obj":"Protein"},{"id":"T18506","span":{"begin":295,"end":300},"obj":"Protein"},{"id":"T18505","span":{"begin":212,"end":213},"obj":"Protein"},{"id":"T18504","span":{"begin":207,"end":211},"obj":"Protein"},{"id":"T18503","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T18502","span":{"begin":129,"end":133},"obj":"Protein"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T19313","span":{"begin":1417,"end":1432},"obj":"Phosphorylation"},{"id":"T19312","span":{"begin":1064,"end":1072},"obj":"Positive_regulation"},{"id":"T19311","span":{"begin":909,"end":918},"obj":"Regulation"},{"id":"T19310","span":{"begin":897,"end":907},"obj":"Gene_expression"},{"id":"T19309","span":{"begin":757,"end":766},"obj":"Negative_regulation"},{"id":"T19308","span":{"begin":677,"end":686},"obj":"Gene_expression"},{"id":"T19307","span":{"begin":628,"end":632},"obj":"Positive_regulation"},{"id":"T19306","span":{"begin":381,"end":390},"obj":"Negative_regulation"},{"id":"T19305","span":{"begin":399,"end":409},"obj":"Gene_expression"},{"id":"T19304","span":{"begin":276,"end":291},"obj":"Phosphorylation"},{"id":"T19303","span":{"begin":261,"end":271},"obj":"Negative_regulation"},{"id":"T19302","span":{"begin":180,"end":190},"obj":"Negative_regulation"},{"id":"T19301","span":{"begin":194,"end":203},"obj":"Negative_regulation"},{"id":"T19293","span":{"begin":1436,"end":1441},"obj":"Protein"},{"id":"T19292","span":{"begin":1277,"end":1282},"obj":"Protein"},{"id":"T19291","span":{"begin":1150,"end":1154},"obj":"Protein"},{"id":"T19290","span":{"begin":1097,"end":1102},"obj":"Protein"},{"id":"T19289","span":{"begin":922,"end":927},"obj":"Protein"},{"id":"T19288","span":{"begin":892,"end":896},"obj":"Protein"},{"id":"T19287","span":{"begin":745,"end":750},"obj":"Protein"},{"id":"T19286","span":{"begin":672,"end":676},"obj":"Protein"},{"id":"T19285","span":{"begin":637,"end":642},"obj":"Protein"},{"id":"T19284","span":{"begin":394,"end":398},"obj":"Protein"},{"id":"T19283","span":{"begin":295,"end":300},"obj":"Protein"},{"id":"T19282","span":{"begin":212,"end":213},"obj":"Protein"},{"id":"T19281","span":{"begin":207,"end":211},"obj":"Protein"},{"id":"T19280","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T19279","span":{"begin":129,"end":133},"obj":"Protein"}],"relations":[{"id":"R12911","pred":"themeOf","subj":"T19281","obj":"T19302"},{"id":"R12912","pred":"themeOf","subj":"T19281","obj":"T19301"},{"id":"R12913","pred":"themeOf","subj":"T19282","obj":"T19302"},{"id":"R12914","pred":"themeOf","subj":"T19282","obj":"T19301"},{"id":"R12915","pred":"themeOf","subj":"T19283","obj":"T19304"},{"id":"R12916","pred":"themeOf","subj":"T19284","obj":"T19305"},{"id":"R12917","pred":"causeOf","subj":"T19285","obj":"T19307"},{"id":"R12918","pred":"themeOf","subj":"T19286","obj":"T19308"},{"id":"R12919","pred":"themeOf","subj":"T19287","obj":"T19309"},{"id":"R12920","pred":"themeOf","subj":"T19288","obj":"T19310"},{"id":"R12921","pred":"causeOf","subj":"T19289","obj":"T19311"},{"id":"R12922","pred":"themeOf","subj":"T19290","obj":"T19312"},{"id":"R12923","pred":"themeOf","subj":"T19293","obj":"T19313"},{"id":"R12926","pred":"themeOf","subj":"T19302","obj":"T19301"},{"id":"R12927","pred":"themeOf","subj":"T19302","obj":"T19301"},{"id":"R12928","pred":"themeOf","subj":"T19304","obj":"T19303"},{"id":"R12929","pred":"themeOf","subj":"T19305","obj":"T19306"},{"id":"R12930","pred":"themeOf","subj":"T19308","obj":"T19307"},{"id":"R12931","pred":"themeOf","subj":"T19310","obj":"T19311"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T19537","span":{"begin":1417,"end":1432},"obj":"Phosphorylation"},{"id":"T19536","span":{"begin":1064,"end":1072},"obj":"Positive_regulation"},{"id":"T19535","span":{"begin":909,"end":918},"obj":"Positive_regulation"},{"id":"T19534","span":{"begin":897,"end":907},"obj":"Gene_expression"},{"id":"T19533","span":{"begin":882,"end":891},"obj":"Positive_regulation"},{"id":"T19532","span":{"begin":757,"end":766},"obj":"Negative_regulation"},{"id":"T19531","span":{"begin":677,"end":686},"obj":"Gene_expression"},{"id":"T19510","span":{"begin":745,"end":750},"obj":"Protein"},{"id":"T19509","span":{"begin":672,"end":676},"obj":"Protein"},{"id":"T19508","span":{"begin":637,"end":642},"obj":"Protein"},{"id":"T19507","span":{"begin":394,"end":398},"obj":"Protein"},{"id":"T19506","span":{"begin":295,"end":300},"obj":"Protein"},{"id":"T19505","span":{"begin":212,"end":213},"obj":"Protein"},{"id":"T19504","span":{"begin":207,"end":211},"obj":"Protein"},{"id":"T19503","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T19502","span":{"begin":129,"end":133},"obj":"Protein"},{"id":"T19516","span":{"begin":1436,"end":1441},"obj":"Protein"},{"id":"T19515","span":{"begin":1277,"end":1282},"obj":"Protein"},{"id":"T19514","span":{"begin":1150,"end":1154},"obj":"Protein"},{"id":"T19513","span":{"begin":1097,"end":1102},"obj":"Protein"},{"id":"T19512","span":{"begin":922,"end":927},"obj":"Protein"},{"id":"T19511","span":{"begin":892,"end":896},"obj":"Protein"},{"id":"T19530","span":{"begin":381,"end":390},"obj":"Negative_regulation"},{"id":"T19529","span":{"begin":399,"end":409},"obj":"Gene_expression"},{"id":"T19528","span":{"begin":194,"end":203},"obj":"Negative_regulation"},{"id":"T19527","span":{"begin":276,"end":291},"obj":"Phosphorylation"},{"id":"T19526","span":{"begin":180,"end":190},"obj":"Negative_regulation"},{"id":"T19525","span":{"begin":261,"end":271},"obj":"Negative_regulation"}],"relations":[{"id":"R12980","pred":"themeOf","subj":"T19504","obj":"T19526"},{"id":"R12981","pred":"themeOf","subj":"T19504","obj":"T19528"},{"id":"R12982","pred":"themeOf","subj":"T19505","obj":"T19526"},{"id":"R12983","pred":"themeOf","subj":"T19505","obj":"T19528"},{"id":"R12984","pred":"themeOf","subj":"T19506","obj":"T19527"},{"id":"R12985","pred":"themeOf","subj":"T19507","obj":"T19529"},{"id":"R12986","pred":"themeOf","subj":"T19509","obj":"T19531"},{"id":"R12987","pred":"themeOf","subj":"T19510","obj":"T19532"},{"id":"R12988","pred":"themeOf","subj":"T19511","obj":"T19534"},{"id":"R12989","pred":"causeOf","subj":"T19512","obj":"T19535"},{"id":"R12990","pred":"themeOf","subj":"T19513","obj":"T19536"},{"id":"R12991","pred":"themeOf","subj":"T19516","obj":"T19537"},{"id":"R12994","pred":"themeOf","subj":"T19526","obj":"T19528"},{"id":"R12995","pred":"themeOf","subj":"T19526","obj":"T19528"},{"id":"R12996","pred":"themeOf","subj":"T19527","obj":"T19525"},{"id":"R12997","pred":"themeOf","subj":"T19529","obj":"T19530"},{"id":"R12998","pred":"themeOf","subj":"T19534","obj":"T19533"},{"id":"R12999","pred":"themeOf","subj":"T19534","obj":"T19535"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T19424","span":{"begin":1436,"end":1441},"obj":"Protein"},{"id":"T19423","span":{"begin":1277,"end":1282},"obj":"Protein"},{"id":"T19422","span":{"begin":1150,"end":1154},"obj":"Protein"},{"id":"T19421","span":{"begin":1097,"end":1102},"obj":"Protein"},{"id":"T19420","span":{"begin":922,"end":927},"obj":"Protein"},{"id":"T19419","span":{"begin":892,"end":896},"obj":"Protein"},{"id":"T19418","span":{"begin":745,"end":750},"obj":"Protein"},{"id":"T19417","span":{"begin":672,"end":676},"obj":"Protein"},{"id":"T19416","span":{"begin":637,"end":642},"obj":"Protein"},{"id":"T19415","span":{"begin":394,"end":398},"obj":"Protein"},{"id":"T19414","span":{"begin":295,"end":300},"obj":"Protein"},{"id":"T19413","span":{"begin":212,"end":213},"obj":"Protein"},{"id":"T19412","span":{"begin":207,"end":211},"obj":"Protein"},{"id":"T19411","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T19410","span":{"begin":129,"end":133},"obj":"Protein"},{"id":"T19444","span":{"begin":1417,"end":1432},"obj":"Phosphorylation"},{"id":"T19443","span":{"begin":1064,"end":1072},"obj":"Positive_regulation"},{"id":"T19442","span":{"begin":882,"end":891},"obj":"Positive_regulation"},{"id":"T19441","span":{"begin":909,"end":918},"obj":"Positive_regulation"},{"id":"T19440","span":{"begin":897,"end":907},"obj":"Gene_expression"},{"id":"T19439","span":{"begin":751,"end":756},"obj":"Negative_regulation"},{"id":"T19438","span":{"begin":757,"end":766},"obj":"Negative_regulation"},{"id":"T19437","span":{"begin":662,"end":671},"obj":"Positive_regulation"},{"id":"T19436","span":{"begin":381,"end":390},"obj":"Negative_regulation"},{"id":"T19435","span":{"begin":399,"end":409},"obj":"Gene_expression"},{"id":"T19434","span":{"begin":276,"end":291},"obj":"Phosphorylation"}],"relations":[{"id":"R12939","pred":"themeOf","subj":"T19414","obj":"T19434"},{"id":"R12940","pred":"themeOf","subj":"T19415","obj":"T19435"},{"id":"R12941","pred":"themeOf","subj":"T19417","obj":"T19437"},{"id":"R12942","pred":"themeOf","subj":"T19418","obj":"T19438"},{"id":"R12943","pred":"themeOf","subj":"T19419","obj":"T19440"},{"id":"R12944","pred":"causeOf","subj":"T19420","obj":"T19441"},{"id":"R12945","pred":"themeOf","subj":"T19421","obj":"T19443"},{"id":"R12946","pred":"themeOf","subj":"T19424","obj":"T19444"},{"id":"R12949","pred":"themeOf","subj":"T19435","obj":"T19436"},{"id":"R12950","pred":"themeOf","subj":"T19438","obj":"T19439"},{"id":"R12951","pred":"themeOf","subj":"T19439","obj":"T19438"},{"id":"R12952","pred":"themeOf","subj":"T19440","obj":"T19441"},{"id":"R12953","pred":"themeOf","subj":"T19440","obj":"T19442"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T19899","span":{"begin":882,"end":928},"obj":"Regulation"},{"id":"T19896","span":{"begin":222,"end":244},"obj":"Phosphorylation"},{"id":"T19895","span":{"begin":976,"end":1005},"obj":"Positive_regulation"},{"id":"T19894","span":{"begin":272,"end":309},"obj":"Phosphorylation"},{"id":"T19891","span":{"begin":882,"end":928},"obj":"Gene_expression"},{"id":"T19887","span":{"begin":569,"end":583},"obj":"Negative_regulation"},{"id":"T19885","span":{"begin":1417,"end":1441},"obj":"Phosphorylation"},{"id":"T19882","span":{"begin":976,"end":1005},"obj":"Negative_regulation"},{"id":"T19880","span":{"begin":394,"end":409},"obj":"Gene_expression"},{"id":"T19879","span":{"begin":1272,"end":1282},"obj":"Protein"},{"id":"T19876","span":{"begin":54,"end":109},"obj":"Entity"},{"id":"T19873","span":{"begin":437,"end":441},"obj":"Entity"},{"id":"T19872","span":{"begin":1433,"end":1441},"obj":"Protein"},{"id":"T19869","span":{"begin":1097,"end":1102},"obj":"Protein"},{"id":"T19867","span":{"begin":212,"end":213},"obj":"Protein"},{"id":"T19866","span":{"begin":207,"end":213},"obj":"Protein"},{"id":"T19864","span":{"begin":892,"end":896},"obj":"Protein"},{"id":"T19862","span":{"begin":639,"end":703},"obj":"Protein"},{"id":"T19859","span":{"begin":248,"end":254},"obj":"Entity"},{"id":"T19855","span":{"begin":85,"end":108},"obj":"Entity"},{"id":"T19853","span":{"begin":1179,"end":1193},"obj":"Protein"},{"id":"T19850","span":{"begin":394,"end":398},"obj":"Protein"},{"id":"T19848","span":{"begin":745,"end":750},"obj":"Protein"},{"id":"T19847","span":{"begin":304,"end":309},"obj":"Entity"},{"id":"T19842","span":{"begin":207,"end":213},"obj":"Protein"},{"id":"T19837","span":{"begin":292,"end":300},"obj":"Protein"},{"id":"T19836","span":{"begin":1570,"end":1578},"obj":"Entity"},{"id":"T19833","span":{"begin":662,"end":703},"obj":"Protein"},{"id":"T19832","span":{"begin":425,"end":428},"obj":"Protein"},{"id":"T19828","span":{"begin":129,"end":133},"obj":"Protein"},{"id":"T19824","span":{"begin":569,"end":572},"obj":"Protein"},{"id":"T19821","span":{"begin":238,"end":244},"obj":"Protein"},{"id":"T19819","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T19818","span":{"begin":542,"end":555},"obj":"Entity"},{"id":"T19817","span":{"begin":805,"end":811},"obj":"Entity"},{"id":"T19816","span":{"begin":70,"end":73},"obj":"Protein"},{"id":"T19813","span":{"begin":85,"end":108},"obj":"Protein"},{"id":"T19809","span":{"begin":1445,"end":1451},"obj":"Entity"},{"id":"T19808","span":{"begin":85,"end":88},"obj":"Protein"},{"id":"T19807","span":{"begin":1138,"end":1146},"obj":"Entity"},{"id":"T19806","span":{"begin":999,"end":1005},"obj":"Protein"},{"id":"T19805","span":{"begin":144,"end":155},"obj":"Protein"},{"id":"T19803","span":{"begin":1171,"end":1174},"obj":"Protein"},{"id":"T19798","span":{"begin":1150,"end":1154},"obj":"Protein"},{"id":"T19797","span":{"begin":1318,"end":1321},"obj":"Protein"},{"id":"T19791","span":{"begin":919,"end":927},"obj":"Protein"},{"id":"T19780","span":{"begin":1463,"end":1468},"obj":"Entity"},{"id":"T19779","span":{"begin":31,"end":37},"obj":"Protein"},{"id":"T19778","span":{"begin":1073,"end":1087},"obj":"Protein"},{"id":"T19775","span":{"begin":498,"end":501},"obj":"Protein"}],"relations":[{"id":"R13129","pred":"causeOf","subj":"T19791","obj":"T19899"},{"id":"R13130","pred":"themeOf","subj":"T19806","obj":"T19895"},{"id":"R13132","pred":"themeOf","subj":"T19821","obj":"T19896"},{"id":"R13133","pred":"themeOf","subj":"T19824","obj":"T19887"},{"id":"R13138","pred":"themeOf","subj":"T19837","obj":"T19894"},{"id":"R13140","pred":"partOf","subj":"T19847","obj":"T19837"},{"id":"R13141","pred":"siteOf","subj":"T19847","obj":"T19894"},{"id":"R13142","pred":"themeOf","subj":"T19850","obj":"T19880"},{"id":"R13146","pred":"themeOf","subj":"T19864","obj":"T19891"},{"id":"R13147","pred":"themeOf","subj":"T19872","obj":"T19885"},{"id":"R13150","pred":"themeOf","subj":"T19891","obj":"T19899"},{"id":"R13152","pred":"themeOf","subj":"T19895","obj":"T19882"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

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to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T19655","span":{"begin":1417,"end":1432},"obj":"Phosphorylation"},{"id":"T19654","span":{"begin":1436,"end":1441},"obj":"Protein"},{"id":"T19653","span":{"begin":1318,"end":1321},"obj":"Protein"},{"id":"T19652","span":{"begin":1277,"end":1282},"obj":"Protein"},{"id":"T19651","span":{"begin":1064,"end":1072},"obj":"Positive_regulation"},{"id":"T19650","span":{"begin":1064,"end":1072},"obj":"Positive_regulation"},{"id":"T19649","span":{"begin":1179,"end":1183},"obj":"Protein"},{"id":"T19648","span":{"begin":1171,"end":1174},"obj":"Protein"},{"id":"T19647","span":{"begin":1150,"end":1154},"obj":"Protein"},{"id":"T19646","span":{"begin":1138,"end":1146},"obj":"Protein"},{"id":"T19645","span":{"begin":1097,"end":1102},"obj":"Protein"},{"id":"T19644","span":{"begin":988,"end":998},"obj":"Positive_regulation"},{"id":"T19643","span":{"begin":909,"end":918},"obj":"Positive_regulation"},{"id":"T19642","span":{"begin":897,"end":907},"obj":"Gene_expression"},{"id":"T19641","span":{"begin":1002,"end":1005},"obj":"Protein"},{"id":"T19640","span":{"begin":922,"end":927},"obj":"Protein"},{"id":"T19639","span":{"begin":882,"end":896},"obj":"Protein"},{"id":"T19638","span":{"begin":628,"end":632},"obj":"Regulation"},{"id":"T19637","span":{"begin":757,"end":766},"obj":"Negative_regulation"},{"id":"T19636","span":{"begin":677,"end":686},"obj":"Gene_expression"},{"id":"T19635","span":{"begin":745,"end":756},"obj":"Protein"},{"id":"T19634","span":{"begin":662,"end":676},"obj":"Protein"},{"id":"T19633","span":{"begin":637,"end":642},"obj":"Protein"},{"id":"T19632","span":{"begin":381,"end":390},"obj":"Negative_regulation"},{"id":"T19631","span":{"begin":399,"end":409},"obj":"Gene_expression"},{"id":"T19630","span":{"begin":569,"end":572},"obj":"Protein"},{"id":"T19629","span":{"begin":394,"end":398},"obj":"Protein"},{"id":"T19628","span":{"begin":261,"end":271},"obj":"Negative_regulation"},{"id":"T19627","span":{"begin":276,"end":291},"obj":"Phosphorylation"},{"id":"T19626","span":{"begin":222,"end":237},"obj":"Phosphorylation"},{"id":"T19625","span":{"begin":180,"end":190},"obj":"Negative_regulation"},{"id":"T19624","span":{"begin":295,"end":300},"obj":"Protein"},{"id":"T19623","span":{"begin":241,"end":244},"obj":"Protein"},{"id":"T19622","span":{"begin":207,"end":211},"obj":"Protein"},{"id":"T19621","span":{"begin":74,"end":83},"obj":"Negative_regulation"},{"id":"T19620","span":{"begin":149,"end":155},"obj":"Protein"},{"id":"T19619","span":{"begin":144,"end":147},"obj":"Protein"},{"id":"T19618","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T19617","span":{"begin":129,"end":133},"obj":"Protein"},{"id":"T19616","span":{"begin":85,"end":88},"obj":"Protein"},{"id":"T19615","span":{"begin":70,"end":73},"obj":"Protein"},{"id":"T19614","span":{"begin":34,"end":37},"obj":"Protein"}],"relations":[{"id":"R13056","pred":"themeOf","subj":"T19642","obj":"T19643"},{"id":"R13057","pred":"themeOf","subj":"T19645","obj":"T19650"},{"id":"R13058","pred":"themeOf","subj":"T19645","obj":"T19651"},{"id":"R13059","pred":"causeOf","subj":"T19647","obj":"T19651"},{"id":"R13060","pred":"themeOf","subj":"T19654","obj":"T19655"},{"id":"R13042","pred":"themeOf","subj":"T19615","obj":"T19621"},{"id":"R13043","pred":"themeOf","subj":"T19622","obj":"T19625"},{"id":"R13044","pred":"themeOf","subj":"T19623","obj":"T19626"},{"id":"R13045","pred":"themeOf","subj":"T19624","obj":"T19627"},{"id":"R13046","pred":"themeOf","subj":"T19627","obj":"T19628"},{"id":"R13047","pred":"themeOf","subj":"T19629","obj":"T19631"},{"id":"R13048","pred":"themeOf","subj":"T19631","obj":"T19632"},{"id":"R13049","pred":"causeOf","subj":"T19633","obj":"T19638"},{"id":"R13050","pred":"themeOf","subj":"T19634","obj":"T19636"},{"id":"R13051","pred":"themeOf","subj":"T19635","obj":"T19637"},{"id":"R13052","pred":"themeOf","subj":"T19636","obj":"T19638"},{"id":"R13053","pred":"themeOf","subj":"T19639","obj":"T19642"},{"id":"R13054","pred":"causeOf","subj":"T19640","obj":"T19643"},{"id":"R13055","pred":"themeOf","subj":"T19641","obj":"T19644"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}

    test3

    {"project":"test3","denotations":[{"id":"T18311","span":{"begin":1436,"end":1441},"obj":"Protein"},{"id":"T18310","span":{"begin":1417,"end":1432},"obj":"Phosphorylation"},{"id":"T18309","span":{"begin":1277,"end":1282},"obj":"Protein"},{"id":"T18308","span":{"begin":1184,"end":1193},"obj":"Regulation"},{"id":"T18307","span":{"begin":1150,"end":1154},"obj":"Protein"},{"id":"T18306","span":{"begin":1097,"end":1102},"obj":"Protein"},{"id":"T18305","span":{"begin":1064,"end":1072},"obj":"Positive_regulation"},{"id":"T18304","span":{"begin":988,"end":998},"obj":"Positive_regulation"},{"id":"T18303","span":{"begin":961,"end":972},"obj":"Positive_regulation"},{"id":"T18302","span":{"begin":922,"end":927},"obj":"Protein"},{"id":"T18301","span":{"begin":909,"end":918},"obj":"Regulation"},{"id":"T18300","span":{"begin":897,"end":907},"obj":"Gene_expression"},{"id":"T18299","span":{"begin":892,"end":896},"obj":"Protein"},{"id":"T18298","span":{"begin":882,"end":891},"obj":"Regulation"},{"id":"T18297","span":{"begin":832,"end":839},"obj":"Negative_regulation"},{"id":"T18296","span":{"begin":812,"end":827},"obj":"Phosphorylation"},{"id":"T18295","span":{"begin":757,"end":766},"obj":"Negative_regulation"},{"id":"T18294","span":{"begin":745,"end":750},"obj":"Protein"},{"id":"T18293","span":{"begin":677,"end":686},"obj":"Gene_expression"},{"id":"T18292","span":{"begin":672,"end":676},"obj":"Protein"},{"id":"T18291","span":{"begin":637,"end":642},"obj":"Protein"},{"id":"T18290","span":{"begin":399,"end":409},"obj":"Gene_expression"},{"id":"T18289","span":{"begin":394,"end":398},"obj":"Protein"},{"id":"T18288","span":{"begin":381,"end":390},"obj":"Negative_regulation"},{"id":"T18287","span":{"begin":295,"end":300},"obj":"Protein"},{"id":"T18286","span":{"begin":276,"end":291},"obj":"Phosphorylation"},{"id":"T18285","span":{"begin":261,"end":271},"obj":"Negative_regulation"},{"id":"T18284","span":{"begin":222,"end":237},"obj":"Phosphorylation"},{"id":"T18283","span":{"begin":212,"end":213},"obj":"Protein"},{"id":"T18282","span":{"begin":207,"end":211},"obj":"Protein"},{"id":"T18281","span":{"begin":194,"end":203},"obj":"Negative_regulation"},{"id":"T18280","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T18279","span":{"begin":129,"end":133},"obj":"Protein"},{"id":"T18245","span":{"begin":1436,"end":1441},"obj":"Protein"},{"id":"T18244","span":{"begin":1277,"end":1282},"obj":"Protein"},{"id":"T18243","span":{"begin":1150,"end":1154},"obj":"Protein"},{"id":"T18242","span":{"begin":1097,"end":1102},"obj":"Protein"},{"id":"T18241","span":{"begin":922,"end":927},"obj":"Protein"},{"id":"T18240","span":{"begin":892,"end":896},"obj":"Protein"},{"id":"T18239","span":{"begin":745,"end":750},"obj":"Protein"},{"id":"T18238","span":{"begin":672,"end":676},"obj":"Protein"},{"id":"T18237","span":{"begin":637,"end":642},"obj":"Protein"},{"id":"T18236","span":{"begin":394,"end":398},"obj":"Protein"},{"id":"T18235","span":{"begin":295,"end":300},"obj":"Protein"},{"id":"T18234","span":{"begin":212,"end":213},"obj":"Protein"},{"id":"T18233","span":{"begin":207,"end":211},"obj":"Protein"},{"id":"T18232","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T18231","span":{"begin":129,"end":133},"obj":"Protein"}],"relations":[{"id":"R12116","pred":"themeOf","subj":"T18282","obj":"T18281"},{"id":"R12117","pred":"themeOf","subj":"T18283","obj":"T18281"},{"id":"R12118","pred":"themeOf","subj":"T18286","obj":"T18285"},{"id":"R12119","pred":"themeOf","subj":"T18287","obj":"T18286"},{"id":"R12120","pred":"themeOf","subj":"T18289","obj":"T18290"},{"id":"R12121","pred":"themeOf","subj":"T18290","obj":"T18288"},{"id":"R12122","pred":"themeOf","subj":"T18292","obj":"T18293"},{"id":"R12123","pred":"themeOf","subj":"T18294","obj":"T18295"},{"id":"R12124","pred":"themeOf","subj":"T18296","obj":"T18297"},{"id":"R12125","pred":"themeOf","subj":"T18298","obj":"T18301"},{"id":"R12126","pred":"themeOf","subj":"T18299","obj":"T18300"},{"id":"R12127","pred":"themeOf","subj":"T18300","obj":"T18298"},{"id":"R12128","pred":"themeOf","subj":"T18300","obj":"T18301"},{"id":"R12129","pred":"causeOf","subj":"T18302","obj":"T18301"},{"id":"R12130","pred":"themeOf","subj":"T18306","obj":"T18305"},{"id":"R12131","pred":"themeOf","subj":"T18307","obj":"T18305"},{"id":"R12132","pred":"themeOf","subj":"T18311","obj":"T18310"}],"text":"Therefore, to examine the role of JNK, we switched to a more specific JNK inhibitor, JNK inhibitor VIII [43], and siRNAs against JNK1 and JNK2 (Fig. S10B–G). As expected, specific inhibition or knockdown of JNK1/2 allowed phosphorylation of Akt on Thr308 while inhibiting the phosphorylation of c-Jun at Ser63 (Fig. S10B,E), agreeing with our model. It did not, however, lead to a reduction in TNFα production or cell death (Fig. S10C,D,F,G), suggesting that earlier data with SP600125 protection (Fig. 2) could reflect off-target effects of this molecule, rather than JNK inhibition. Previous reports also suggested a critical role for c-Jun in necroptosis and autocrine TNFα synthesis [13], [14], [15] and we confirmed these conclusions using c-Jun siRNA knockdown (Fig. S10H–J). Notably, in this case, Thr308 phosphorylation was reduced after the induction of necroptosis. Thus, autocrine TNFα production, dependent on c-Jun, may create a feedback loop that contributes to the delayed activation of Akt. It is also important to note that we observed an overall increase in the protein level of c-Jun after treatment of L929 cells with zVAD.fmk or TNFα, which was both Akt and mTOR-dependent (Fig. 6E,F). These new data led us to an unexpected, but important conclusion that c-Jun is critical for necroptosis, while JNK activity may serve as a useful marker of pathway activation, but may be either redundant (e.g. phosphorylation of c-Jun on a site other than Ser63 may occur [44]) or dispensable functionally. In addition, researchers need to use caution when using SP600125 due to potantial off-target effects."}