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PMC:3585731 / 36732-37013 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T16762 72-81 Regulation denotes autocrine
T16737 82-86 Protein denotes TNFα

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17320 278-280 FW denotes se
T17319 274-277 FW denotes per
T17318 268-273 NN denotes death
T17317 263-267 NN denotes cell
T17316 259-262 CC denotes and
T17315 248-258 NN denotes conditions
T17314 236-247 JJ denotes necroptotic
T17313 230-235 IN denotes under
T17312 220-229 NN denotes signaling
T17311 207-219 JJ denotes inflammatory
T17310 194-206 JJ denotes Akt-mediated
T17309 186-193 IN denotes between
T17308 170-185 NN denotes differentiation
T17307 159-169 JJ denotes unexpected
T17306 156-158 DT denotes an
T17305 145-155 VB denotes indicating
T17304 143-144 -COMMA- denotes ,
T17303 138-143 NN denotes death
T17302 133-137 NN denotes cell
T17301 121-132 JJ denotes necroptotic
T17300 118-120 IN denotes of
T17299 110-117 NN denotes absence
T17298 106-109 DT denotes the
T17297 103-105 IN denotes in
T17296 98-102 RB denotes even
T17295 96-97 -COMMA- denotes ,
T17294 87-96 NN denotes synthesis
T17293 82-86 NN denotes TNFα
T17292 72-81 JJ denotes autocrine
T17291 68-71 IN denotes for
T17290 59-67 JJ denotes critical
T17289 56-58 VB denotes is
T17288 47-55 NN denotes activity
T17287 43-46 NN denotes Akt
T17286 38-42 IN denotes that
T17285 31-37 NN denotes notion
T17284 27-30 DT denotes the
T17283 19-26 VB denotes support
T17282 11-18 RB denotes further
T17281 6-10 NN denotes data
T17280 0-5 DT denotes These
R11524 T17281 T17280 arg1Of data,These
R11525 T17281 T17283 arg1Of data,support
R11526 T17283 T17282 arg1Of support,further
R11527 T17285 T17283 arg2Of notion,support
R11528 T17285 T17284 arg1Of notion,the
R11529 T17288 T17287 arg1Of activity,Akt
R11530 T17288 T17289 arg1Of activity,is
R11531 T17288 T17290 arg1Of activity,critical
R11532 T17289 T17285 arg2Of is,notion
R11533 T17289 T17286 arg1Of is,that
R11534 T17289 T17295 arg1Of is,","
R11535 T17289 T17297 arg1Of is,in
R11536 T17289 T17304 arg1Of is,","
R11537 T17289 T17305 modOf is,indicating
R11538 T17290 T17289 arg2Of critical,is
R11539 T17290 T17291 arg1Of critical,for
R11540 T17294 T17291 arg2Of synthesis,for
R11541 T17294 T17292 arg1Of synthesis,autocrine
R11542 T17294 T17293 arg1Of synthesis,TNFα
R11543 T17297 T17296 arg1Of in,even
R11544 T17297 T17298 arg1Of in,the
R11545 T17297 T17300 arg1Of in,of
R11546 T17299 T17297 arg2Of absence,in
R11547 T17303 T17297 arg3Of death,in
R11548 T17303 T17301 arg1Of death,necroptotic
R11549 T17303 T17302 arg1Of death,cell
R11550 T17308 T17305 arg2Of differentiation,indicating
R11551 T17308 T17306 arg1Of differentiation,an
R11552 T17308 T17307 arg1Of differentiation,unexpected
R11553 T17308 T17309 arg1Of differentiation,between
R11554 T17311 T17310 arg1Of inflammatory,Akt-mediated
R11555 T17312 T17311 arg1Of signaling,inflammatory
R11556 T17312 T17313 arg1Of signaling,under
R11557 T17312 T17316 arg1Of signaling,and
R11558 T17315 T17313 arg2Of conditions,under
R11559 T17315 T17314 arg1Of conditions,necroptotic
R11560 T17316 T17309 arg2Of and,between
R11561 T17318 T17316 arg2Of death,and
R11562 T17318 T17317 arg1Of death,cell
R11563 T17318 T17320 arg1Of death,se
R11564 T17320 T17319 arg1Of se,per

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16892 82-86 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T17421 82-86 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T17411 194-197 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T17410 43-46 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T17398 194-197 http://www.uniprot.org/uniprot/P31751 denotes Akt
T17397 43-46 http://www.uniprot.org/uniprot/P31751 denotes Akt
T17385 194-197 http://www.uniprot.org/uniprot/P31749 denotes Akt
T17384 43-46 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T16923 87-96 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T16909 268-273 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T16908 138-143 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T16901 263-273 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T16900 133-143 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T16895 220-229 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T16933 263-267 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T16932 133-137 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T16837 0-281 Sentence denotes These data further support the notion that Akt activity is critical for autocrine TNFα synthesis, even in the absence of necroptotic cell death, indicating an unexpected differentiation between Akt-mediated inflammatory signaling under necroptotic conditions and cell death per se.
T227 0-281 Sentence denotes These data further support the notion that Akt activity is critical for autocrine TNFα synthesis, even in the absence of necroptotic cell death, indicating an unexpected differentiation between Akt-mediated inflammatory signaling under necroptotic conditions and cell death per se.

simple1

Id Subject Object Predicate Lexical cue
T16952 82-86 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17372 87-96 Gene_expression denotes synthesis
T17358 82-86 Protein denotes TNFα
R11576 T17358 T17372 themeOf TNFα,synthesis

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T17906 87-96 Gene_expression denotes synthesis
T17905 59-67 Positive_regulation denotes critical
T17891 82-86 Protein denotes TNFα
R12007 T17891 T17906 themeOf TNFα,synthesis
R12012 T17906 T17905 themeOf synthesis,critical

DLUT931

Id Subject Object Predicate Lexical cue
T17872 87-96 Gene_expression denotes synthesis
T17856 82-86 Protein denotes TNFα
R11986 T17856 T17872 themeOf TNFα,synthesis

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T18097 194-258 Regulation denotes Akt-mediated inflammatory signaling under necroptotic conditions
T18085 38-46 Protein denotes that Akt
T18068 194-206 Protein denotes Akt-mediated
T18065 68-97 Protein denotes for autocrine TNFα synthesis,
R12073 T18068 T18097 causeOf Akt-mediated,Akt-mediated inflammatory signaling under necroptotic conditions

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T17810 278-280 FW denotes se
T17809 274-277 IN denotes per
T17808 268-273 NN denotes death
T17807 263-267 NN denotes cell
T17806 259-262 CC denotes and
T17805 248-258 NNS denotes conditions
T17804 236-247 JJ denotes necroptotic
T17803 230-235 IN denotes under
T17802 220-229 VBG denotes signaling
T17801 207-219 JJ denotes inflammatory
T17800 194-206 JJ denotes Akt-mediated
T17799 186-193 IN denotes between
T17798 170-185 NN denotes differentiation
T17797 159-169 JJ denotes unexpected
T17796 156-158 DT denotes an
T17795 145-155 VBG denotes indicating
T17794 143-144 , denotes ,
T17793 138-143 NN denotes death
T17792 133-137 NN denotes cell
T17791 121-132 JJ denotes necroptotic
T17790 118-120 IN denotes of
T17789 110-117 NN denotes absence
T17788 106-109 DT denotes the
T17787 103-105 IN denotes in
T17786 98-102 RB denotes even
T17785 96-97 , denotes ,
T17784 87-96 NN denotes synthesis
T17783 82-86 NNP denotes TNFα
T17782 72-81 NN denotes autocrine
T17781 68-71 IN denotes for
T17780 59-67 JJ denotes critical
T17779 56-58 VBZ denotes is
T17778 47-55 NN denotes activity
T17777 43-46 NNP denotes Akt
T17776 38-42 IN denotes that
T17775 31-37 NN denotes notion
T17774 27-30 DT denotes the
T17773 19-26 NN denotes support
T17772 11-18 JJ denotes further
T17771 6-10 NNS denotes data
T17770 0-5 DT denotes These
T17811 280-281 . denotes .
R11924 T17770 T17771 det These,data
R11925 T17771 T17773 nsubj data,support
R11926 T17772 T17773 advmod further,support
R11927 T17773 T17773 ROOT support,support
R11928 T17774 T17775 det the,notion
R11929 T17775 T17773 dobj notion,support
R11930 T17776 T17779 mark that,is
R11931 T17777 T17778 compound Akt,activity
R11932 T17778 T17779 nsubj activity,is
R11933 T17779 T17775 acl is,notion
R11934 T17780 T17779 acomp critical,is
R11935 T17781 T17780 prep for,critical
R11936 T17782 T17784 compound autocrine,synthesis
R11937 T17783 T17784 compound TNFα,synthesis
R11938 T17784 T17781 pobj synthesis,for
R11939 T17785 T17779 punct ",",is
R11940 T17786 T17787 advmod even,in
R11941 T17787 T17779 prep in,is
R11942 T17788 T17789 det the,absence
R11943 T17789 T17787 pobj absence,in
R11944 T17790 T17789 prep of,absence
R11945 T17791 T17793 amod necroptotic,death
R11946 T17792 T17793 compound cell,death
R11947 T17793 T17790 pobj death,of
R11948 T17794 T17779 punct ",",is
R11949 T17795 T17779 advcl indicating,is
R11950 T17796 T17798 det an,differentiation
R11951 T17797 T17798 amod unexpected,differentiation
R11952 T17798 T17795 dobj differentiation,indicating
R11953 T17799 T17798 prep between,differentiation
R11954 T17800 T17802 amod Akt-mediated,signaling
R11955 T17801 T17802 amod inflammatory,signaling
R11956 T17802 T17799 pobj signaling,between
R11957 T17803 T17798 prep under,differentiation
R11958 T17804 T17805 amod necroptotic,conditions
R11959 T17805 T17803 pobj conditions,under
R11960 T17806 T17805 cc and,conditions
R11961 T17807 T17808 compound cell,death
R11962 T17808 T17798 conj death,differentiation
R11963 T17809 T17798 prep per,differentiation
R11964 T17810 T17809 pobj se,per
R11965 T17811 T17773 punct .,support

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T17968 87-96 Gene_expression denotes synthesis
T17967 72-86 Protein denotes autocrine TNFα
T17966 43-46 Protein denotes Akt
R12036 T17967 T17968 themeOf autocrine TNFα,synthesis

test3

Id Subject Object Predicate Lexical cue
T16823 87-96 Gene_expression denotes synthesis
T16822 82-86 Protein denotes TNFα
T16821 72-81 Regulation denotes autocrine
T16781 82-86 Protein denotes TNFα
R11169 T16822 T16823 themeOf TNFα,synthesis
R11170 T16823 T16821 themeOf synthesis,autocrine