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PMC:3585731 / 20043-20329 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T8928 61-76 Phosphorylation denotes phosphorylation
T8927 45-53 Positive_regulation denotes increase
T8887 272-274 Protein denotes S6
T8886 263-269 Protein denotes p70S6K
T8885 230-261 Protein denotes p70 ribosomal protein S6 Kinase
T8884 190-194 Protein denotes MDM2
T8883 173-188 Protein denotes double minute 2
R5799 T8883 T8928 themeOf double minute 2,phosphorylation
R5800 T8884 T8883 equivalentTo MDM2,double minute 2
R5801 T8885 T8883 equivalentTo p70 ribosomal protein S6 Kinase,double minute 2
R5802 T8887 T8928 themeOf S6,phosphorylation
R5816 T8928 T8927 themeOf phosphorylation,increase

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9475 284-285 -RRB- denotes )
T9474 282-284 NN denotes 5A
T9473 277-281 NN denotes Fig.
T9472 276-277 -LRB- denotes (
T9471 274-275 -RRB- denotes )
T9470 272-274 NN denotes S6
T9469 270-271 -COMMA- denotes ,
T9468 269-270 -RRB- denotes )
T9467 263-269 NN denotes p70S6K
T9466 262-263 -LRB- denotes (
T9465 255-261 NN denotes Kinase
T9464 252-254 NN denotes S6
T9463 244-251 NN denotes protein
T9462 234-243 JJ denotes ribosomal
T9461 230-233 NN denotes p70
T9460 229-230 -LRB- denotes (
T9459 219-228 NN denotes molecules
T9458 208-218 JJ denotes downstream
T9457 205-207 IN denotes as
T9456 200-204 RB denotes well
T9455 197-199 RB denotes as
T9454 195-196 -RRB- denotes )
T9453 194-195 -RRB- denotes )
T9452 190-194 NN denotes MDM2
T9451 189-190 -LRB- denotes (
T9450 187-188 CD denotes 2
T9449 180-186 JJ denotes minute
T9448 173-179 JJ denotes double
T9447 167-172 NN denotes mouse
T9446 163-166 CC denotes and
T9445 155-162 NN denotes kinases
T9444 149-154 NN denotes GSK-3
T9443 147-148 -COMMA- denotes ,
T9442 139-147 NN denotes proteins
T9441 137-138 -RRB- denotes )
T9440 133-137 NN denotes FoxO
T9439 132-133 -LRB- denotes (
T9438 130-131 NN denotes O
T9437 124-129 NN denotes class
T9436 120-123 NN denotes box
T9435 111-119 NN denotes Forkhead
T9434 110-111 -LRB- denotes (
T9433 99-109 NN denotes substrates
T9432 95-98 NN denotes Akt
T9431 89-94 VB denotes known
T9430 80-88 JJ denotes multiple
T9429 77-79 IN denotes of
T9428 61-76 NN denotes phosphorylation
T9427 57-60 DT denotes the
T9426 54-56 IN denotes in
T9425 45-53 NN denotes increase
T9424 42-44 DT denotes an
T9423 33-41 VB denotes observed
T9422 30-32 PRP denotes we
T9421 28-29 -COMMA- denotes ,
T9420 18-28 NN denotes conditions
T9419 6-17 JJ denotes necroptotic
T9418 0-5 IN denotes Under
R5936 T9420 T9418 arg2Of conditions,Under
R5937 T9420 T9419 arg1Of conditions,necroptotic
R5938 T9422 T9423 arg1Of we,observed
R5939 T9423 T9418 arg1Of observed,Under
R5940 T9423 T9421 arg1Of observed,","
R5941 T9425 T9423 arg2Of increase,observed
R5942 T9425 T9424 arg1Of increase,an
R5943 T9425 T9426 arg1Of increase,in
R5944 T9428 T9426 arg2Of phosphorylation,in
R5945 T9428 T9427 arg1Of phosphorylation,the
R5946 T9428 T9429 arg1Of phosphorylation,of
R5947 T9433 T9430 arg1Of substrates,multiple
R5948 T9433 T9431 arg2Of substrates,known
R5949 T9433 T9432 arg1Of substrates,Akt
R5950 T9433 T9434 arg1Of substrates,(
R5951 T9433 T9457 arg1Of substrates,as
R5952 T9440 T9439 arg2Of FoxO,(
R5953 T9441 T9439 arg3Of ),(
R5954 T9442 T9435 arg1Of proteins,Forkhead
R5955 T9442 T9436 arg1Of proteins,box
R5956 T9442 T9437 arg1Of proteins,class
R5957 T9442 T9438 arg1Of proteins,O
R5958 T9442 T9439 arg1Of proteins,(
R5959 T9442 T9443 arg1Of proteins,","
R5960 T9443 T9446 arg1Of ",",and
R5961 T9445 T9443 arg2Of kinases,","
R5962 T9445 T9444 arg1Of kinases,GSK-3
R5963 T9446 T9434 arg2Of and,(
R5964 T9449 T9448 arg1Of minute,double
R5965 T9450 T9446 arg2Of 2,and
R5966 T9450 T9447 arg1Of 2,mouse
R5967 T9450 T9449 arg1Of 2,minute
R5968 T9450 T9451 arg1Of 2,(
R5969 T9452 T9451 arg2Of MDM2,(
R5970 T9453 T9451 arg3Of ),(
R5971 T9454 T9434 arg3Of ),(
R5972 T9457 T9429 arg2Of as,of
R5973 T9457 T9455 arg1Of as,as
R5974 T9457 T9456 arg1Of as,well
R5975 T9459 T9457 arg2Of molecules,as
R5976 T9459 T9458 arg1Of molecules,downstream
R5977 T9459 T9460 arg1Of molecules,(
R5978 T9459 T9472 arg1Of molecules,(
R5979 T9465 T9460 arg2Of Kinase,(
R5980 T9465 T9461 arg1Of Kinase,p70
R5981 T9465 T9462 arg1Of Kinase,ribosomal
R5982 T9465 T9463 arg1Of Kinase,protein
R5983 T9465 T9464 arg1Of Kinase,S6
R5984 T9465 T9466 arg1Of Kinase,(
R5985 T9465 T9469 arg1Of Kinase,","
R5986 T9467 T9466 arg2Of p70S6K,(
R5987 T9468 T9466 arg3Of ),(
R5988 T9470 T9469 arg2Of S6,","
R5989 T9471 T9460 arg3Of ),(
R5990 T9474 T9472 arg2Of 5A,(
R5991 T9474 T9473 arg1Of 5A,Fig.
R5992 T9475 T9472 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9202 272-274 Protein denotes S6
T9201 263-269 Protein denotes p70S6K
T9200 230-261 Protein denotes p70 ribosomal protein S6 Kinase
T9199 190-194 Protein denotes MDM2
T9198 173-188 Protein denotes double minute 2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10263 95-98 http://www.uniprot.org/uniprot/P31751 denotes Akt
T10249 95-98 http://www.uniprot.org/uniprot/P31749 denotes Akt
T10277 95-98 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T9290 149-152 http://purl.obolibrary.org/obo/GO_0050321 denotes GSK
T9284 61-76 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-MF

Id Subject Object Predicate Lexical cue
T9317 234-251 http://purl.obolibrary.org/obo/GO_0003735 denotes ribosomal protein
T9314 149-152 http://purl.obolibrary.org/obo/GO_0050321 denotes GSK

sentences

Id Subject Object Predicate Lexical cue
T9087 0-286 Sentence denotes Under necroptotic conditions, we observed an increase in the phosphorylation of multiple known Akt substrates (Forkhead box class O (FoxO) proteins, GSK-3 kinases and mouse double minute 2 (MDM2)) as well as downstream molecules (p70 ribosomal protein S6 Kinase (p70S6K), S6) (Fig. 5A).
T128 0-286 Sentence denotes Under necroptotic conditions, we observed an increase in the phosphorylation of multiple known Akt substrates (Forkhead box class O (FoxO) proteins, GSK-3 kinases and mouse double minute 2 (MDM2)) as well as downstream molecules (p70 ribosomal protein S6 Kinase (p70S6K), S6) (Fig. 5A).

simple1

Id Subject Object Predicate Lexical cue
T9338 272-274 Protein denotes S6
T9337 263-269 Protein denotes p70S6K
T9336 230-261 Protein denotes p70 ribosomal protein S6 Kinase
T9335 190-194 Protein denotes MDM2
T9334 173-188 Protein denotes double minute 2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10215 45-53 Positive_regulation denotes increase
T10214 61-76 Phosphorylation denotes phosphorylation
T10176 272-274 Protein denotes S6
T10175 263-269 Protein denotes p70S6K
T10174 230-261 Protein denotes p70 ribosomal protein S6 Kinase
T10173 190-194 Protein denotes MDM2
T10172 173-188 Protein denotes double minute 2
R6659 T10172 T10214 themeOf double minute 2,phosphorylation
R6660 T10173 T10214 themeOf MDM2,phosphorylation
R6661 T10174 T10214 themeOf p70 ribosomal protein S6 Kinase,phosphorylation
R6662 T10175 T10214 themeOf p70S6K,phosphorylation
R6663 T10176 T10214 themeOf S6,phosphorylation
R6687 T10214 T10215 themeOf phosphorylation,increase
R6688 T10214 T10215 themeOf phosphorylation,increase
R6689 T10214 T10215 themeOf phosphorylation,increase
R6690 T10214 T10215 themeOf phosphorylation,increase
R6691 T10214 T10215 themeOf phosphorylation,increase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T10463 272-274 Protein denotes S6
T10462 263-269 Protein denotes p70S6K
T10461 230-261 Protein denotes p70 ribosomal protein S6 Kinase
T10460 190-194 Protein denotes MDM2
T10459 173-188 Protein denotes double minute 2
T10502 45-53 Positive_regulation denotes increase
T10501 61-76 Phosphorylation denotes phosphorylation
R6777 T10459 T10501 themeOf double minute 2,phosphorylation
R6778 T10460 T10501 themeOf MDM2,phosphorylation
R6779 T10461 T10501 themeOf p70 ribosomal protein S6 Kinase,phosphorylation
R6780 T10462 T10501 themeOf p70S6K,phosphorylation
R6781 T10463 T10501 themeOf S6,phosphorylation
R6802 T10501 T10502 themeOf phosphorylation,increase
R6803 T10501 T10502 themeOf phosphorylation,increase
R6804 T10501 T10502 themeOf phosphorylation,increase
R6805 T10501 T10502 themeOf phosphorylation,increase
R6806 T10501 T10502 themeOf phosphorylation,increase

DLUT931

Id Subject Object Predicate Lexical cue
T10319 272-274 Protein denotes S6
T10318 263-269 Protein denotes p70S6K
T10317 230-261 Protein denotes p70 ribosomal protein S6 Kinase
T10316 190-194 Protein denotes MDM2
T10315 173-188 Protein denotes double minute 2
T10358 45-53 Positive_regulation denotes increase
T10357 61-76 Phosphorylation denotes phosphorylation
R6701 T10315 T10357 themeOf double minute 2,phosphorylation
R6702 T10316 T10357 themeOf MDM2,phosphorylation
R6703 T10317 T10357 themeOf p70 ribosomal protein S6 Kinase,phosphorylation
R6704 T10318 T10357 themeOf p70S6K,phosphorylation
R6705 T10319 T10357 themeOf S6,phosphorylation
R6736 T10357 T10358 themeOf phosphorylation,increase
R6737 T10357 T10358 themeOf phosphorylation,increase
R6738 T10357 T10358 themeOf phosphorylation,increase
R6739 T10357 T10358 themeOf phosphorylation,increase
R6740 T10357 T10358 themeOf phosphorylation,increase

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10928 0-109 Positive_regulation denotes Under necroptotic conditions, we observed an increase in the phosphorylation of multiple known Akt substrates
T10921 230-274 Protein denotes p70 ribosomal protein S6 Kinase (p70S6K), S6
T10910 149-154 Protein denotes GSK-3
T10883 139-196 Protein denotes proteins, GSK-3 kinases and mouse double minute 2 (MDM2))
T10860 149-162 Protein denotes GSK-3 kinases
T10852 133-137 Entity denotes FoxO
T10847 208-275 Entity denotes downstream molecules (p70 ribosomal protein S6 Kinase (p70S6K), S6)
T10844 190-194 Protein denotes MDM2
T10827 230-271 Protein denotes p70 ribosomal protein S6 Kinase (p70S6K),
T10813 95-98 Protein denotes Akt
T10808 263-269 Protein denotes p70S6K
T10805 167-195 Protein denotes mouse double minute 2 (MDM2)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11027 285-286 . denotes .
T11026 284-285 -RRB- denotes )
T11025 282-284 NNP denotes 5A
T11024 277-281 NNP denotes Fig.
T11023 276-277 -LRB- denotes (
T11022 274-275 -RRB- denotes )
T11021 272-274 NNP denotes S6
T11020 270-271 , denotes ,
T11019 269-270 -RRB- denotes )
T11018 263-269 NNP denotes p70S6K
T11017 262-263 -LRB- denotes (
T11016 255-261 NNP denotes Kinase
T11015 252-254 NNP denotes S6
T11014 244-251 NN denotes protein
T11013 234-243 JJ denotes ribosomal
T11012 230-233 CD denotes p70
T11011 229-230 -LRB- denotes (
T11010 219-228 NNS denotes molecules
T11009 208-218 JJ denotes downstream
T11008 205-207 IN denotes as
T11007 200-204 RB denotes well
T11006 197-199 RB denotes as
T11005 195-196 -RRB- denotes )
T11004 194-195 -RRB- denotes )
T11003 190-194 NN denotes MDM2
T11002 189-190 -LRB- denotes (
T11001 187-188 CD denotes 2
T11000 180-186 NN denotes minute
T10999 173-179 JJ denotes double
T10998 167-172 NN denotes mouse
T10997 163-166 CC denotes and
T10996 155-162 NNS denotes kinases
T10995 149-154 JJ denotes GSK-3
T10994 147-148 , denotes ,
T10993 139-147 NNS denotes proteins
T10992 137-138 -RRB- denotes )
T10991 133-137 NNP denotes FoxO
T10990 132-133 -LRB- denotes (
T10989 130-131 NNP denotes O
T10988 124-129 NN denotes class
T10987 120-123 NN denotes box
T10986 111-119 NNP denotes Forkhead
T10985 110-111 -LRB- denotes (
T10984 99-109 VBZ denotes substrates
T10983 95-98 NNP denotes Akt
T10982 89-94 VBN denotes known
T10981 80-88 JJ denotes multiple
T10980 77-79 IN denotes of
T10979 61-76 NN denotes phosphorylation
T10978 57-60 DT denotes the
T10977 54-56 IN denotes in
T10976 45-53 NN denotes increase
T10975 42-44 DT denotes an
T10974 33-41 VBD denotes observed
T10973 30-32 PRP denotes we
T10972 28-29 , denotes ,
T10971 18-28 NNS denotes conditions
T10970 6-17 JJ denotes necroptotic
T10969 0-5 IN denotes Under
R7006 T10969 T10974 prep Under,observed
R7007 T10970 T10971 amod necroptotic,conditions
R7008 T10971 T10969 pobj conditions,Under
R7009 T10972 T10974 punct ",",observed
R7010 T10973 T10974 nsubj we,observed
R7011 T10974 T10974 ROOT observed,observed
R7012 T10975 T10976 det an,increase
R7013 T10976 T10974 dobj increase,observed
R7014 T10977 T10976 prep in,increase
R7015 T10978 T10979 det the,phosphorylation
R7016 T10979 T10977 pobj phosphorylation,in
R7017 T10980 T10979 prep of,phosphorylation
R7018 T10981 T10984 amod multiple,substrates
R7019 T10982 T10984 amod known,substrates
R7020 T10983 T10984 compound Akt,substrates
R7021 T10984 T10980 pobj substrates,of
R7022 T10985 T10984 punct (,substrates
R7023 T10986 T10993 nmod Forkhead,proteins
R7024 T10987 T10988 compound box,class
R7025 T10988 T10993 nmod class,proteins
R7026 T10989 T10993 nmod O,proteins
R7027 T10990 T10991 punct (,FoxO
R7028 T10991 T10989 appos FoxO,O
R7029 T10992 T10993 punct ),proteins
R7030 T10993 T10984 appos proteins,substrates
R7031 T10994 T10993 punct ",",proteins
R7032 T10995 T10996 compound GSK-3,kinases
R7033 T10996 T10993 conj kinases,proteins
R7034 T10997 T10996 cc and,kinases
R7035 T10998 T10996 conj mouse,kinases
R7036 T10999 T11000 amod double,minute
R7037 T11000 T10984 appos minute,substrates
R7038 T11001 T11000 nummod 2,minute
R7039 T11002 T11003 punct (,MDM2
R7040 T11003 T11000 appos MDM2,minute
R7041 T11004 T10974 punct ),observed
R7042 T11005 T10974 punct ),observed
R7043 T11006 T11008 advmod as,as
R7044 T11007 T11008 advmod well,as
R7045 T11008 T10974 cc as,observed
R7046 T11009 T11010 amod downstream,molecules
R7047 T11010 T10974 conj molecules,observed
R7048 T11011 T11010 punct (,molecules
R7049 T11012 T11014 meta p70,protein
R7050 T11013 T11014 compound ribosomal,protein
R7051 T11014 T11010 appos protein,molecules
R7052 T11015 T11016 compound S6,Kinase
R7053 T11016 T11014 appos Kinase,protein
R7054 T11017 T11018 punct (,p70S6K
R7055 T11018 T11016 appos p70S6K,Kinase
R7056 T11019 T11018 punct ),p70S6K
R7057 T11020 T11016 punct ",",Kinase
R7058 T11021 T11016 appos S6,Kinase
R7059 T11022 T11016 punct ),Kinase
R7060 T11023 T11025 punct (,5A
R7061 T11024 T11025 compound Fig.,5A
R7062 T11025 T11016 appos 5A,Kinase
R7063 T11026 T11025 punct ),5A
R7064 T11027 T10974 punct .,observed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T10537 167-188 Protein denotes mouse double minute 2
T10536 149-162 Protein denotes GSK-3 kinases
T10535 111-147 Protein denotes Forkhead box class O (FoxO) proteins
T10534 95-98 Protein denotes Akt
T10541 263-269 Protein denotes p70S6K
T10540 252-261 Protein denotes S6 Kinase
T10539 230-251 Protein denotes p70 ribosomal protein
T10538 190-194 Protein denotes MDM2

test3

Id Subject Object Predicate Lexical cue
T9010 173-188 Protein denotes double minute 2
T9009 61-76 Phosphorylation denotes phosphorylation
T9008 45-53 Positive_regulation denotes increase
T8968 272-274 Protein denotes S6
T8967 263-269 Protein denotes p70S6K
T8966 230-261 Protein denotes p70 ribosomal protein S6 Kinase
T8965 190-194 Protein denotes MDM2
T8964 173-188 Protein denotes double minute 2
T9014 272-274 Protein denotes S6
T9013 263-269 Protein denotes p70S6K
T9012 230-261 Protein denotes p70 ribosomal protein S6 Kinase
T9011 190-194 Protein denotes MDM2
R5826 T9009 T9008 themeOf phosphorylation,increase
R5827 T9010 T9009 themeOf double minute 2,phosphorylation
R5828 T9011 T9010 equivalentTo MDM2,double minute 2
R5829 T9012 T9010 equivalentTo p70 ribosomal protein S6 Kinase,double minute 2
R5830 T9013 T9010 equivalentTo p70S6K,double minute 2
R5831 T9013 T9012 equivalentTo p70S6K,p70 ribosomal protein S6 Kinase
R5832 T9014 T9009 themeOf S6,phosphorylation