PMC:3342329 / 986-1176
Annnotations
test3
{"project":"test3","denotations":[{"id":"T103","span":{"begin":151,"end":155},"obj":"Protein"},{"id":"T102","span":{"begin":114,"end":123},"obj":"Negative_regulation"},{"id":"T101","span":{"begin":102,"end":108},"obj":"Protein"},{"id":"T73","span":{"begin":151,"end":155},"obj":"Protein"},{"id":"T72","span":{"begin":102,"end":108},"obj":"Protein"}],"text":", cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. Interestingly, we found t"}
testone
{"project":"testone","denotations":[{"id":"T37","span":{"begin":151,"end":155},"obj":"Protein"},{"id":"T36","span":{"begin":102,"end":108},"obj":"Protein"},{"id":"T55","span":{"begin":114,"end":123},"obj":"Negative_regulation"},{"id":"T54","span":{"begin":68,"end":78},"obj":"Gene_expression"}],"relations":[{"id":"R7","pred":"themeOf","subj":"T36","obj":"T55"},{"id":"R8","pred":"themeOf","subj":"T36","obj":"T54"},{"id":"R13","pred":"themeOf","subj":"T54","obj":"T55"}],"text":", cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. Interestingly, we found t"}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T643","span":{"begin":114,"end":123},"obj":"Negative_regulation"},{"id":"T642","span":{"begin":68,"end":78},"obj":"Gene_expression"},{"id":"T629","span":{"begin":151,"end":155},"obj":"Protein"},{"id":"T628","span":{"begin":102,"end":108},"obj":"Protein"}],"relations":[{"id":"R344","pred":"themeOf","subj":"T628","obj":"T642"},{"id":"R345","pred":"themeOf","subj":"T628","obj":"T643"}],"text":", cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. Interestingly, we found t"}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T769","span":{"begin":68,"end":78},"obj":"Gene_expression"},{"id":"T768","span":{"begin":114,"end":123},"obj":"Negative_regulation"},{"id":"T755","span":{"begin":151,"end":155},"obj":"Protein"},{"id":"T754","span":{"begin":102,"end":108},"obj":"Protein"}],"relations":[{"id":"R413","pred":"themeOf","subj":"T754","obj":"T769"},{"id":"R414","pred":"themeOf","subj":"T754","obj":"T768"},{"id":"R418","pred":"themeOf","subj":"T769","obj":"T768"}],"text":", cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. Interestingly, we found t"}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T447","span":{"begin":183,"end":188},"obj":"VB"},{"id":"T446","span":{"begin":180,"end":182},"obj":"PRP"},{"id":"T445","span":{"begin":178,"end":179},"obj":"-COMMA-"},{"id":"T444","span":{"begin":165,"end":178},"obj":"RB"},{"id":"T443","span":{"begin":159,"end":163},"obj":"NN"},{"id":"T442","span":{"begin":151,"end":158},"obj":"NN"},{"id":"T441","span":{"begin":148,"end":150},"obj":"IN"},{"id":"T440","span":{"begin":140,"end":147},"obj":"NN"},{"id":"T439","span":{"begin":131,"end":139},"obj":"NN"},{"id":"T438","span":{"begin":127,"end":130},"obj":"DT"},{"id":"T437","span":{"begin":124,"end":126},"obj":"IN"},{"id":"T436","span":{"begin":114,"end":123},"obj":"VB"},{"id":"T435","span":{"begin":110,"end":113},"obj":"VB"},{"id":"T434","span":{"begin":108,"end":109},"obj":"-COMMA-"},{"id":"T433","span":{"begin":102,"end":108},"obj":"NN"},{"id":"T432","span":{"begin":100,"end":101},"obj":"-COMMA-"},{"id":"T431","span":{"begin":95,"end":100},"obj":"NN"},{"id":"T430","span":{"begin":92,"end":94},"obj":"IN"},{"id":"T429","span":{"begin":87,"end":91},"obj":"JJ"},{"id":"T428","span":{"begin":85,"end":86},"obj":"-COMMA-"},{"id":"T427","span":{"begin":79,"end":85},"obj":"NN"},{"id":"T426","span":{"begin":68,"end":78},"obj":"NN"},{"id":"T425","span":{"begin":60,"end":67},"obj":"NN"},{"id":"T424","span":{"begin":51,"end":59},"obj":"NN"},{"id":"T423","span":{"begin":47,"end":50},"obj":"DT"},{"id":"T422","span":{"begin":39,"end":46},"obj":"IN"},{"id":"T421","span":{"begin":37,"end":38},"obj":"-COMMA-"},{"id":"T420","span":{"begin":29,"end":37},"obj":"VB"},{"id":"T419","span":{"begin":25,"end":28},"obj":"VB"},{"id":"T418","span":{"begin":23,"end":24},"obj":"-COMMA-"},{"id":"T417","span":{"begin":20,"end":23},"obj":"NN"},{"id":"T416","span":{"begin":16,"end":19},"obj":"CC"},{"id":"T415","span":{"begin":14,"end":15},"obj":"-COMMA-"},{"id":"T414","span":{"begin":10,"end":14},"obj":"NN"},{"id":"T413","span":{"begin":2,"end":9},"obj":"VB"},{"id":"T412","span":{"begin":0,"end":1},"obj":"-COMMA-"}],"relations":[{"id":"R195","pred":"arg1Of","subj":"T413","obj":"T412"},{"id":"R196","pred":"arg3Of","subj":"T414","obj":"T413"},{"id":"R198","pred":"arg1Of","subj":"T416","obj":"T415"},{"id":"R199","pred":"arg2Of","subj":"T417","obj":"T416"},{"id":"R200","pred":"arg1Of","subj":"T420","obj":"T418"},{"id":"R201","pred":"arg2Of","subj":"T420","obj":"T419"},{"id":"R202","pred":"arg1Of","subj":"T420","obj":"T421"},{"id":"R203","pred":"arg1Of","subj":"T420","obj":"T422"},{"id":"R204","pred":"arg1Of","subj":"T427","obj":"T423"},{"id":"R205","pred":"arg1Of","subj":"T427","obj":"T424"},{"id":"R206","pred":"arg1Of","subj":"T427","obj":"T425"},{"id":"R207","pred":"arg1Of","subj":"T427","obj":"T426"},{"id":"R208","pred":"arg1Of","subj":"T427","obj":"T428"},{"id":"R209","pred":"arg1Of","subj":"T427","obj":"T430"},{"id":"R210","pred":"arg1Of","subj":"T427","obj":"T435"},{"id":"R211","pred":"arg2Of","subj":"T427","obj":"T436"},{"id":"R212","pred":"arg1Of","subj":"T430","obj":"T429"},{"id":"R213","pred":"arg2Of","subj":"T431","obj":"T430"},{"id":"R214","pred":"arg1Of","subj":"T431","obj":"T432"},{"id":"R215","pred":"arg2Of","subj":"T433","obj":"T432"},{"id":"R216","pred":"arg2Of","subj":"T436","obj":"T422"},{"id":"R217","pred":"arg1Of","subj":"T436","obj":"T434"},{"id":"R218","pred":"arg2Of","subj":"T436","obj":"T435"},{"id":"R219","pred":"arg1Of","subj":"T436","obj":"T437"},{"id":"R220","pred":"arg2Of","subj":"T440","obj":"T437"},{"id":"R221","pred":"arg1Of","subj":"T440","obj":"T438"},{"id":"R222","pred":"arg1Of","subj":"T440","obj":"T439"},{"id":"R223","pred":"arg1Of","subj":"T440","obj":"T441"},{"id":"R224","pred":"arg2Of","subj":"T443","obj":"T441"},{"id":"R225","pred":"arg1Of","subj":"T443","obj":"T442"},{"id":"R226","pred":"arg1Of","subj":"T446","obj":"T447"},{"id":"R227","pred":"arg1Of","subj":"T447","obj":"T444"},{"id":"R228","pred":"arg1Of","subj":"T447","obj":"T445"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":", cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. Interestingly, we found t"}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T179","span":{"begin":151,"end":155},"obj":"Protein"},{"id":"T178","span":{"begin":102,"end":108},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":", cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. Interestingly, we found t"}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T552","span":{"begin":102,"end":108},"obj":"http://www.uniprot.org/uniprot/Q13490"},{"id":"T542","span":{"begin":151,"end":155},"obj":"http://www.uniprot.org/uniprot/P51681"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":", cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. Interestingly, we found t"}
UBERON-AE
{"project":"UBERON-AE","denotations":[{"id":"T115","span":{"begin":140,"end":147},"obj":"http://purl.obolibrary.org/obo/UBERON_0000479"}],"text":", cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. Interestingly, we found t"}
simple1
{"project":"simple1","denotations":[{"id":"T252","span":{"begin":151,"end":155},"obj":"Protein"},{"id":"T251","span":{"begin":102,"end":108},"obj":"Protein"}],"text":", cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. Interestingly, we found t"}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T583","span":{"begin":114,"end":123},"obj":"Negative_regulation"},{"id":"T582","span":{"begin":68,"end":78},"obj":"Gene_expression"},{"id":"T569","span":{"begin":151,"end":155},"obj":"Protein"},{"id":"T568","span":{"begin":102,"end":108},"obj":"Protein"}],"relations":[{"id":"R320","pred":"themeOf","subj":"T568","obj":"T582"},{"id":"R326","pred":"themeOf","subj":"T582","obj":"T583"}],"text":", cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. Interestingly, we found t"}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T816","span":{"begin":60,"end":78},"obj":"Gene_expression"},{"id":"T813","span":{"begin":60,"end":67},"obj":"Protein"},{"id":"T812","span":{"begin":159,"end":163},"obj":"Protein"},{"id":"T811","span":{"begin":95,"end":100},"obj":"Protein"},{"id":"T806","span":{"begin":102,"end":109},"obj":"Protein"},{"id":"T805","span":{"begin":10,"end":14},"obj":"Protein"},{"id":"T799","span":{"begin":20,"end":23},"obj":"Protein"}],"relations":[{"id":"R424","pred":"themeOf","subj":"T813","obj":"T816"}],"text":", cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. Interestingly, we found t"}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1035","span":{"begin":183,"end":188},"obj":"VBD"},{"id":"T1034","span":{"begin":180,"end":182},"obj":"PRP"},{"id":"T1033","span":{"begin":178,"end":179},"obj":","},{"id":"T1032","span":{"begin":165,"end":178},"obj":"RB"},{"id":"T1031","span":{"begin":163,"end":164},"obj":"."},{"id":"T1030","span":{"begin":159,"end":163},"obj":"NNS"},{"id":"T1029","span":{"begin":157,"end":158},"obj":"NN"},{"id":"T1028","span":{"begin":156,"end":157},"obj":"NN"},{"id":"T1027","span":{"begin":155,"end":156},"obj":"CD"},{"id":"T1026","span":{"begin":151,"end":155},"obj":"CD"},{"id":"T1025","span":{"begin":148,"end":150},"obj":"IN"},{"id":"T1024","span":{"begin":140,"end":147},"obj":"NNS"},{"id":"T1023","span":{"begin":131,"end":139},"obj":"NN"},{"id":"T1022","span":{"begin":127,"end":130},"obj":"DT"},{"id":"T1021","span":{"begin":124,"end":126},"obj":"IN"},{"id":"T1020","span":{"begin":114,"end":123},"obj":"VBN"},{"id":"T1019","span":{"begin":110,"end":113},"obj":"VBD"},{"id":"T1018","span":{"begin":108,"end":109},"obj":","},{"id":"T1017","span":{"begin":102,"end":108},"obj":"NNP"},{"id":"T1016","span":{"begin":100,"end":101},"obj":","},{"id":"T1015","span":{"begin":95,"end":100},"obj":"NN"},{"id":"T1014","span":{"begin":92,"end":94},"obj":"IN"},{"id":"T1013","span":{"begin":87,"end":91},"obj":"JJ"},{"id":"T1012","span":{"begin":85,"end":86},"obj":","},{"id":"T1011","span":{"begin":79,"end":85},"obj":"NNS"},{"id":"T1010","span":{"begin":68,"end":78},"obj":"NN"},{"id":"T1009","span":{"begin":60,"end":67},"obj":"NN"},{"id":"T1008","span":{"begin":51,"end":59},"obj":"NN"},{"id":"T1007","span":{"begin":47,"end":50},"obj":"DT"},{"id":"T1006","span":{"begin":39,"end":46},"obj":"IN"},{"id":"T1005","span":{"begin":37,"end":38},"obj":","},{"id":"T1004","span":{"begin":29,"end":37},"obj":"VBN"},{"id":"T1003","span":{"begin":25,"end":28},"obj":"VBD"},{"id":"T1002","span":{"begin":23,"end":24},"obj":","},{"id":"T1001","span":{"begin":20,"end":23},"obj":"NNP"},{"id":"T1000","span":{"begin":16,"end":19},"obj":"CC"},{"id":"T999","span":{"begin":14,"end":15},"obj":","},{"id":"T998","span":{"begin":10,"end":14},"obj":"NNP"},{"id":"T997","span":{"begin":2,"end":9},"obj":"JJ"},{"id":"T996","span":{"begin":0,"end":1},"obj":","}],"relations":[{"id":"R601","pred":"punct","subj":"T996","obj":"T998"},{"id":"R602","pred":"compound","subj":"T997","obj":"T998"},{"id":"R604","pred":"punct","subj":"T999","obj":"T998"},{"id":"R605","pred":"cc","subj":"T1000","obj":"T998"},{"id":"R606","pred":"conj","subj":"T1001","obj":"T998"},{"id":"R607","pred":"punct","subj":"T1002","obj":"T1004"},{"id":"R608","pred":"auxpass","subj":"T1003","obj":"T1004"},{"id":"R609","pred":"ROOT","subj":"T1004","obj":"T1004"},{"id":"R610","pred":"punct","subj":"T1005","obj":"T1004"},{"id":"R611","pred":"mark","subj":"T1006","obj":"T1020"},{"id":"R612","pred":"det","subj":"T1007","obj":"T1011"},{"id":"R613","pred":"compound","subj":"T1008","obj":"T1009"},{"id":"R614","pred":"compound","subj":"T1009","obj":"T1011"},{"id":"R615","pred":"compound","subj":"T1010","obj":"T1011"},{"id":"R616","pred":"nsubjpass","subj":"T1011","obj":"T1020"},{"id":"R617","pred":"punct","subj":"T1012","obj":"T1011"},{"id":"R618","pred":"amod","subj":"T1013","obj":"T1014"},{"id":"R619","pred":"prep","subj":"T1014","obj":"T1011"},{"id":"R620","pred":"pobj","subj":"T1015","obj":"T1014"},{"id":"R621","pred":"punct","subj":"T1016","obj":"T1015"},{"id":"R622","pred":"conj","subj":"T1017","obj":"T1015"},{"id":"R623","pred":"punct","subj":"T1018","obj":"T1020"},{"id":"R624","pred":"auxpass","subj":"T1019","obj":"T1020"},{"id":"R625","pred":"advcl","subj":"T1020","obj":"T1004"},{"id":"R626","pred":"prep","subj":"T1021","obj":"T1020"},{"id":"R627","pred":"det","subj":"T1022","obj":"T1024"},{"id":"R629","pred":"compound","subj":"T1023","obj":"T1024"},{"id":"R630","pred":"pobj","subj":"T1024","obj":"T1021"},{"id":"R631","pred":"prep","subj":"T1025","obj":"T1024"},{"id":"R632","pred":"nummod","subj":"T1026","obj":"T1030"},{"id":"R633","pred":"nummod","subj":"T1027","obj":"T1030"},{"id":"R634","pred":"nmod","subj":"T1028","obj":"T1030"},{"id":"R635","pred":"compound","subj":"T1029","obj":"T1030"},{"id":"R636","pred":"pobj","subj":"T1030","obj":"T1025"},{"id":"R637","pred":"punct","subj":"T1031","obj":"T1004"},{"id":"R638","pred":"advmod","subj":"T1032","obj":"T1035"},{"id":"R639","pred":"punct","subj":"T1033","obj":"T1035"},{"id":"R640","pred":"nsubj","subj":"T1034","obj":"T1035"},{"id":"R641","pred":"ROOT","subj":"T1035","obj":"T1035"}],"text":", cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. Interestingly, we found t"}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T680","span":{"begin":114,"end":123},"obj":"Negative_regulation"},{"id":"T679","span":{"begin":68,"end":78},"obj":"Gene_expression"},{"id":"T678","span":{"begin":29,"end":37},"obj":"Positive_regulation"},{"id":"T677","span":{"begin":29,"end":37},"obj":"Positive_regulation"},{"id":"T674","span":{"begin":95,"end":108},"obj":"Protein"},{"id":"T673","span":{"begin":20,"end":23},"obj":"Protein"},{"id":"T672","span":{"begin":10,"end":14},"obj":"Protein"}],"relations":[{"id":"R366","pred":"themeOf","subj":"T674","obj":"T679"},{"id":"R369","pred":"themeOf","subj":"T679","obj":"T680"}],"text":", cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. Interestingly, we found t"}