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PMC:3342329 / 986-1176 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T103 151-155 Protein denotes CCR5
T102 114-123 Negative_regulation denotes decreased
T101 102-108 Protein denotes C-IAP1
T73 151-155 Protein denotes CCR5
T72 102-108 Protein denotes C-IAP1

testone

Id Subject Object Predicate Lexical cue
T37 151-155 Protein denotes CCR5
T36 102-108 Protein denotes C-IAP1
T55 114-123 Negative_regulation denotes decreased
T54 68-78 Gene_expression denotes expression
R7 T36 T55 themeOf C-IAP1,decreased
R8 T36 T54 themeOf C-IAP1,expression
R13 T54 T55 themeOf expression,decreased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T643 114-123 Negative_regulation denotes decreased
T642 68-78 Gene_expression denotes expression
T629 151-155 Protein denotes CCR5
T628 102-108 Protein denotes C-IAP1
R344 T628 T642 themeOf C-IAP1,expression
R345 T628 T643 themeOf C-IAP1,decreased

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T769 68-78 Gene_expression denotes expression
T768 114-123 Negative_regulation denotes decreased
T755 151-155 Protein denotes CCR5
T754 102-108 Protein denotes C-IAP1
R413 T754 T769 themeOf C-IAP1,expression
R414 T754 T768 themeOf C-IAP1,decreased
R418 T769 T768 themeOf expression,decreased

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T447 183-188 VB denotes found
T446 180-182 PRP denotes we
T445 178-179 -COMMA- denotes ,
T444 165-178 RB denotes Interestingly
T443 159-163 NN denotes mice
T442 151-158 NN denotes CCR5−/−
T441 148-150 IN denotes of
T440 140-147 NN denotes tissues
T439 131-139 NN denotes melanoma
T438 127-130 DT denotes the
T437 124-126 IN denotes in
T436 114-123 VB denotes decreased
T435 110-113 VB denotes was
T434 108-109 -COMMA- denotes ,
T433 102-108 NN denotes C-IAP1
T432 100-101 -COMMA- denotes ,
T431 95-100 NN denotes Bcl-2
T430 92-94 IN denotes as
T429 87-91 JJ denotes such
T428 85-86 -COMMA- denotes ,
T427 79-85 NN denotes levels
T426 68-78 NN denotes expression
T425 60-67 NN denotes protein
T424 51-59 NN denotes survival
T423 47-50 DT denotes the
T422 39-46 IN denotes whereas
T421 37-38 -COMMA- denotes ,
T420 29-37 VB denotes elevated
T419 25-28 VB denotes was
T418 23-24 -COMMA- denotes ,
T417 20-23 NN denotes Bax
T416 16-19 CC denotes and
T415 14-15 -COMMA- denotes ,
T414 10-14 NN denotes PARP
T413 2-9 VB denotes cleaved
T412 0-1 -COMMA- denotes ,
R195 T413 T412 arg1Of cleaved,","
R196 T414 T413 arg3Of PARP,cleaved
R198 T416 T415 arg1Of and,","
R199 T417 T416 arg2Of Bax,and
R200 T420 T418 arg1Of elevated,","
R201 T420 T419 arg2Of elevated,was
R202 T420 T421 arg1Of elevated,","
R203 T420 T422 arg1Of elevated,whereas
R204 T427 T423 arg1Of levels,the
R205 T427 T424 arg1Of levels,survival
R206 T427 T425 arg1Of levels,protein
R207 T427 T426 arg1Of levels,expression
R208 T427 T428 arg1Of levels,","
R209 T427 T430 arg1Of levels,as
R210 T427 T435 arg1Of levels,was
R211 T427 T436 arg2Of levels,decreased
R212 T430 T429 arg1Of as,such
R213 T431 T430 arg2Of Bcl-2,as
R214 T431 T432 arg1Of Bcl-2,","
R215 T433 T432 arg2Of C-IAP1,","
R216 T436 T422 arg2Of decreased,whereas
R217 T436 T434 arg1Of decreased,","
R218 T436 T435 arg2Of decreased,was
R219 T436 T437 arg1Of decreased,in
R220 T440 T437 arg2Of tissues,in
R221 T440 T438 arg1Of tissues,the
R222 T440 T439 arg1Of tissues,melanoma
R223 T440 T441 arg1Of tissues,of
R224 T443 T441 arg2Of mice,of
R225 T443 T442 arg1Of mice,CCR5−/−
R226 T446 T447 arg1Of we,found
R227 T447 T444 arg1Of found,Interestingly
R228 T447 T445 arg1Of found,","

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T179 151-155 Protein denotes CCR5
T178 102-108 Protein denotes C-IAP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T552 102-108 http://www.uniprot.org/uniprot/Q13490 denotes C-IAP1
T542 151-155 http://www.uniprot.org/uniprot/P51681 denotes CCR5

UBERON-AE

Id Subject Object Predicate Lexical cue
T115 140-147 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

simple1

Id Subject Object Predicate Lexical cue
T252 151-155 Protein denotes CCR5
T251 102-108 Protein denotes C-IAP1

DLUT931

Id Subject Object Predicate Lexical cue
T583 114-123 Negative_regulation denotes decreased
T582 68-78 Gene_expression denotes expression
T569 151-155 Protein denotes CCR5
T568 102-108 Protein denotes C-IAP1
R320 T568 T582 themeOf C-IAP1,expression
R326 T582 T583 themeOf expression,decreased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T816 60-78 Gene_expression denotes protein expression
T813 60-67 Protein denotes protein
T812 159-163 Protein denotes mice
T811 95-100 Protein denotes Bcl-2
T806 102-109 Protein denotes C-IAP1,
T805 10-14 Protein denotes PARP
T799 20-23 Protein denotes Bax
R424 T813 T816 themeOf protein,protein expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1035 183-188 VBD denotes found
T1034 180-182 PRP denotes we
T1033 178-179 , denotes ,
T1032 165-178 RB denotes Interestingly
T1031 163-164 . denotes .
T1030 159-163 NNS denotes mice
T1029 157-158 NN denotes −
T1028 156-157 NN denotes /
T1027 155-156 CD denotes −
T1026 151-155 CD denotes CCR5
T1025 148-150 IN denotes of
T1024 140-147 NNS denotes tissues
T1023 131-139 NN denotes melanoma
T1022 127-130 DT denotes the
T1021 124-126 IN denotes in
T1020 114-123 VBN denotes decreased
T1019 110-113 VBD denotes was
T1018 108-109 , denotes ,
T1017 102-108 NNP denotes C-IAP1
T1016 100-101 , denotes ,
T1015 95-100 NN denotes Bcl-2
T1014 92-94 IN denotes as
T1013 87-91 JJ denotes such
T1012 85-86 , denotes ,
T1011 79-85 NNS denotes levels
T1010 68-78 NN denotes expression
T1009 60-67 NN denotes protein
T1008 51-59 NN denotes survival
T1007 47-50 DT denotes the
T1006 39-46 IN denotes whereas
T1005 37-38 , denotes ,
T1004 29-37 VBN denotes elevated
T1003 25-28 VBD denotes was
T1002 23-24 , denotes ,
T1001 20-23 NNP denotes Bax
T1000 16-19 CC denotes and
T999 14-15 , denotes ,
T998 10-14 NNP denotes PARP
T997 2-9 JJ denotes cleaved
T996 0-1 , denotes ,
R601 T996 T998 punct ",",PARP
R602 T997 T998 compound cleaved,PARP
R604 T999 T998 punct ",",PARP
R605 T1000 T998 cc and,PARP
R606 T1001 T998 conj Bax,PARP
R607 T1002 T1004 punct ",",elevated
R608 T1003 T1004 auxpass was,elevated
R609 T1004 T1004 ROOT elevated,elevated
R610 T1005 T1004 punct ",",elevated
R611 T1006 T1020 mark whereas,decreased
R612 T1007 T1011 det the,levels
R613 T1008 T1009 compound survival,protein
R614 T1009 T1011 compound protein,levels
R615 T1010 T1011 compound expression,levels
R616 T1011 T1020 nsubjpass levels,decreased
R617 T1012 T1011 punct ",",levels
R618 T1013 T1014 amod such,as
R619 T1014 T1011 prep as,levels
R620 T1015 T1014 pobj Bcl-2,as
R621 T1016 T1015 punct ",",Bcl-2
R622 T1017 T1015 conj C-IAP1,Bcl-2
R623 T1018 T1020 punct ",",decreased
R624 T1019 T1020 auxpass was,decreased
R625 T1020 T1004 advcl decreased,elevated
R626 T1021 T1020 prep in,decreased
R627 T1022 T1024 det the,tissues
R629 T1023 T1024 compound melanoma,tissues
R630 T1024 T1021 pobj tissues,in
R631 T1025 T1024 prep of,tissues
R632 T1026 T1030 nummod CCR5,mice
R633 T1027 T1030 nummod −,mice
R634 T1028 T1030 nmod /,mice
R635 T1029 T1030 compound −,mice
R636 T1030 T1025 pobj mice,of
R637 T1031 T1004 punct .,elevated
R638 T1032 T1035 advmod Interestingly,found
R639 T1033 T1035 punct ",",found
R640 T1034 T1035 nsubj we,found
R641 T1035 T1035 ROOT found,found

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T680 114-123 Negative_regulation denotes decreased
T679 68-78 Gene_expression denotes expression
T678 29-37 Positive_regulation denotes elevated
T677 29-37 Positive_regulation denotes elevated
T674 95-108 Protein denotes Bcl-2, C-IAP1
T673 20-23 Protein denotes Bax
T672 10-14 Protein denotes PARP
R366 T674 T679 themeOf "Bcl-2, C-IAP1",expression
R369 T679 T680 themeOf expression,decreased