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PMC:3342329 / 27002-27902 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T13308 809-813 Protein denotes CCR5
T13307 737-741 Protein denotes CCR5
T13306 541-545 Protein denotes CCR5
T13305 515-519 Protein denotes CCR5
T13304 48-52 Protein denotes CCR5
T13303 33-37 Protein denotes CCR5
T13302 20-24 Protein denotes CCR5
T13301 4-8 Protein denotes CCR5
T13300 809-813 Protein denotes CCR5
T13299 737-741 Protein denotes CCR5
T13298 541-545 Protein denotes CCR5
T13297 515-519 Protein denotes CCR5
T13296 48-52 Protein denotes CCR5
T13295 33-37 Protein denotes CCR5
T13294 20-24 Protein denotes CCR5
T13293 4-8 Protein denotes CCR5

testone

Id Subject Object Predicate Lexical cue
T13292 809-813 Protein denotes CCR5
T13291 737-741 Protein denotes CCR5
T13290 541-545 Protein denotes CCR5
T13289 515-519 Protein denotes CCR5
T13288 48-52 Protein denotes CCR5
T13287 33-37 Protein denotes CCR5
T13286 20-24 Protein denotes CCR5
T13285 4-8 Protein denotes CCR5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13567 819-826 Negative_regulation denotes deleted
T13566 38-46 Negative_regulation denotes knockout
T13565 809-813 Protein denotes CCR5
T13564 737-741 Protein denotes CCR5
T13563 541-545 Protein denotes CCR5
T13562 515-519 Protein denotes CCR5
T13561 48-52 Protein denotes CCR5
T13560 33-37 Protein denotes CCR5
T13559 20-24 Protein denotes CCR5
T13558 4-8 Protein denotes CCR5
R9287 T13558 T13566 themeOf CCR5,knockout
R9288 T13560 T13566 themeOf CCR5,knockout
R9289 T13561 T13566 themeOf CCR5,knockout
R9290 T13565 T13567 themeOf CCR5,deleted

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T13531 38-46 Negative_regulation denotes knockout
T13530 809-813 Protein denotes CCR5
T13529 737-741 Protein denotes CCR5
T13528 541-545 Protein denotes CCR5
T13527 515-519 Protein denotes CCR5
T13526 48-52 Protein denotes CCR5
T13525 33-37 Protein denotes CCR5
T13524 20-24 Protein denotes CCR5
T13523 4-8 Protein denotes CCR5
R9281 T13523 T13531 themeOf CCR5,knockout
R9282 T13525 T13531 themeOf CCR5,knockout
R9283 T13526 T13531 themeOf CCR5,knockout

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T13514 881-899 NN denotes 129P2-Cmkbr5tm1Kuz
T13513 880-881 -COLON- denotes ;
T13512 878-880 NN denotes B6
T13511 874-877 CC denotes and
T13510 857-873 NN denotes 129P2-Ccr5tm1kuz
T13509 856-857 -COLON- denotes ;
T13508 854-856 NN denotes B6
T13507 852-853 -COMMA- denotes ,
T13506 845-852 NN denotes strains
T13505 836-844 JJ denotes parental
T13504 832-835 DT denotes the
T13503 827-831 IN denotes from
T13502 819-826 VB denotes deleted
T13501 814-818 NN denotes gene
T13500 809-813 NN denotes CCR5
T13499 805-808 DT denotes the
T13498 802-804 IN denotes of
T13497 795-801 NN denotes region
T13496 788-794 VB denotes coding
T13495 781-787 JJ denotes entire
T13494 777-780 DT denotes the
T13493 772-776 VB denotes have
T13492 770-771 -RRB- denotes )
T13491 752-770 NN denotes 129P2-Ccr5tm1Kuz/J
T13490 750-751 -COMMA- denotes ,
T13489 748-750 NN denotes B6
T13488 747-748 -LRB- denotes (
T13487 742-746 NN denotes mice
T13486 737-741 NN denotes CCR5
T13485 728-735 NN denotes strains
T13484 719-727 JJ denotes parental
T13483 711-718 NN denotes 129P3/J
T13482 707-710 CC denotes and
T13481 693-706 NN denotes C57BL/6J-AW-J
T13480 689-692 DT denotes the
T13479 684-688 IN denotes from
T13478 679-683 NN denotes mice
T13477 672-678 JJ denotes hybrid
T13476 669-671 NN denotes F2
T13475 664-668 VB denotes were
T13474 662-663 -RRB- denotes )
T13473 652-662 NN denotes B6129PF2/J
T13472 651-652 -LRB- denotes (
T13471 646-650 NN denotes mice
T13470 638-645 NN denotes Control
T13469 635-636 -RRB- denotes )
T13468 634-635 NN denotes g
T13467 628-633 CD denotes 16–19
T13466 627-628 -LRB- denotes (
T13465 619-626 NN denotes weights
T13464 615-618 CC denotes and
T13463 613-614 -RRB- denotes )
T13462 610-613 JJ denotes old
T13461 604-609 NN denotes weeks
T13460 598-603 CD denotes 10–11
T13459 597-598 -LRB- denotes (
T13458 592-596 NN denotes ages
T13457 584-591 VB denotes matched
T13456 580-583 VB denotes had
T13455 578-579 -COMMA- denotes ,
T13454 574-578 VB denotes used
T13453 569-573 VB denotes were
T13452 564-568 WDT denotes that
T13451 562-563 -COMMA- denotes ,
T13450 561-562 -RRB- denotes )
T13449 555-561 NN denotes n = 20
T13448 554-555 -LRB- denotes (
T13447 549-553 NN denotes mice
T13446 541-548 NN denotes CCR5−/−
T13445 537-540 CC denotes and
T13444 535-536 -RRB- denotes )
T13443 529-535 NN denotes n = 20
T13442 528-529 -LRB- denotes (
T13441 523-527 NN denotes mice
T13440 515-522 JJ denotes CCR5+/+
T13439 511-514 DT denotes The
T13438 502-509 NN denotes libitum
T13437 499-501 NN denotes ad
T13436 493-498 NN denotes water
T13435 489-492 NN denotes tap
T13434 480-488 VB denotes purified
T13433 476-479 CC denotes and
T13432 474-475 -RRB- denotes )
T13431 469-474 NNP denotes Korea
T13430 467-468 -COMMA- denotes ,
T13429 460-467 NNP denotes Samyang
T13428 459-460 -LRB- denotes (
T13427 454-458 NN denotes chow
T13426 447-453 NN denotes rodent
T13425 438-446 JJ denotes standard
T13424 434-437 VB denotes fed
T13423 430-433 CC denotes and
T13422 428-429 -COMMA- denotes ,
T13421 423-428 NN denotes cycle
T13420 412-422 NN denotes light/dark
T13419 407-411 JJ denotes 12-h
T13418 403-406 CC denotes and
T13417 401-402 -COMMA- denotes ,
T13416 400-401 NN denotes %
T13415 395-400 CD denotes 55±10
T13414 392-394 IN denotes of
T13413 383-391 NN denotes humidity
T13412 374-382 JJ denotes relative
T13411 372-373 -COMMA- denotes ,
T13410 366-372 NN denotes 22±1°C
T13409 363-365 IN denotes of
T13408 351-362 NN denotes temperature
T13407 342-350 JJ denotes constant
T13406 340-341 DT denotes a
T13405 335-339 IN denotes with
T13404 330-334 NN denotes room
T13403 328-329 DT denotes a
T13402 325-327 IN denotes in
T13401 314-324 VB denotes maintained
T13400 309-313 VB denotes were
T13399 307-308 -RRB- denotes )
T13398 297-307 NN denotes n = 4/cage
T13397 296-297 -LRB- denotes (
T13396 291-295 NN denotes mice
T13395 287-290 DT denotes The
T13394 280-286 NNP denotes Korea.
T13393 278-279 -COMMA- denotes ,
T13392 268-278 NNP denotes University
T13391 259-267 NNP denotes National
T13390 250-258 NNP denotes Chungbuk
T13389 247-249 IN denotes of
T13388 240-246 NNP denotes Center
T13387 231-239 NNP denotes Research
T13386 224-230 NNP denotes Animal
T13385 213-223 NNP denotes Laboratory
T13384 209-212 DT denotes the
T13383 206-208 IN denotes at
T13382 195-205 NN denotes conditions
T13381 190-194 JJ denotes free
T13380 181-189 NN denotes pathogen
T13379 172-180 JJ denotes specific
T13378 166-171 IN denotes under
T13355 48-55 NN denotes CCR5−/−
T13354 47-48 -LRB- denotes (
T13353 38-46 NN denotes knockout
T13352 33-37 NN denotes CCR5
T13351 29-32 CC denotes and
T13350 27-28 -RRB- denotes )
T13349 20-27 NN denotes CCR5+/+
T13348 19-20 -LRB- denotes (
T13347 14-18 NN denotes type
T13346 9-13 JJ denotes wild
T13345 4-8 NN denotes CCR5
T13344 0-3 DT denotes The
T13377 161-165 VB denotes bred
T13376 157-160 CC denotes and
T13375 150-156 VB denotes housed
T13374 145-149 VB denotes were
T13373 140-144 NN denotes mice
T13372 136-139 DT denotes The
T13371 133-134 -RRB- denotes )
T13370 130-133 NNP denotes USA
T13369 124-129 CD denotes 04609
T13368 118-123 NNP denotes Maine
T13367 116-117 -COMMA- denotes ,
T13366 110-116 NNP denotes Harbor
T13365 106-109 NNP denotes Bar
T13364 105-106 -LRB- denotes (
T13363 94-104 NNP denotes Laboratory
T13362 86-93 NNP denotes Jackson
T13361 82-85 DT denotes The
T13360 77-81 IN denotes from
T13359 67-76 VB denotes purchased
T13358 62-66 VB denotes were
T13357 57-61 NN denotes mice
T13356 55-56 -RRB- denotes )
R9106 T13347 T13345 arg1Of type,CCR5
R9107 T13347 T13346 arg1Of type,wild
R9108 T13347 T13348 arg1Of type,(
R9109 T13347 T13351 arg1Of type,and
R9110 T13349 T13348 arg2Of CCR5+/+,(
R9111 T13350 T13348 arg3Of ),(
R9112 T13353 T13351 arg2Of knockout,and
R9113 T13353 T13352 arg1Of knockout,CCR5
R9114 T13353 T13354 arg1Of knockout,(
R9115 T13355 T13354 arg2Of CCR5−/−,(
R9116 T13356 T13354 arg3Of ),(
R9117 T13357 T13344 arg1Of mice,The
R9118 T13357 T13347 arg1Of mice,type
R9119 T13357 T13353 arg1Of mice,knockout
R9120 T13357 T13358 arg1Of mice,were
R9121 T13357 T13359 arg2Of mice,purchased
R9122 T13359 T13358 arg2Of purchased,were
R9123 T13359 T13360 arg1Of purchased,from
R9124 T13363 T13360 arg2Of Laboratory,from
R9125 T13363 T13361 arg1Of Laboratory,The
R9126 T13363 T13362 arg1Of Laboratory,Jackson
R9127 T13363 T13364 arg1Of Laboratory,(
R9128 T13366 T13364 arg2Of Harbor,(
R9129 T13366 T13365 arg1Of Harbor,Bar
R9130 T13366 T13367 arg1Of Harbor,","
R9131 T13368 T13367 arg2Of Maine,","
R9132 T13368 T13369 arg1Of Maine,04609
R9133 T13368 T13370 arg1Of Maine,USA
R9134 T13371 T13364 arg3Of ),(
R9135 T13373 T13372 arg1Of mice,The
R9136 T13373 T13374 arg1Of mice,were
R9137 T13373 T13375 arg2Of mice,housed
R9138 T13373 T13377 arg2Of mice,bred
R9139 T13375 T13376 arg1Of housed,and
R9140 T13376 T13374 arg2Of and,were
R9141 T13376 T13378 arg1Of and,under
R9142 T13377 T13376 arg2Of bred,and
R9143 T13382 T13378 arg2Of conditions,under
R9144 T13382 T13379 arg1Of conditions,specific
R9145 T13382 T13380 arg1Of conditions,pathogen
R9146 T13382 T13381 arg1Of conditions,free
R9147 T13382 T13383 arg1Of conditions,at
R9148 T13388 T13383 arg2Of Center,at
R9149 T13388 T13384 arg1Of Center,the
R9150 T13388 T13385 arg1Of Center,Laboratory
R9151 T13388 T13386 arg1Of Center,Animal
R9152 T13388 T13387 arg1Of Center,Research
R9153 T13388 T13389 arg1Of Center,of
R9154 T13388 T13400 modOf Center,were
R9155 T13392 T13389 arg2Of University,of
R9156 T13392 T13390 arg1Of University,Chungbuk
R9157 T13392 T13391 arg1Of University,National
R9158 T13396 T13394 arg1Of mice,Korea.
R9159 T13396 T13395 arg1Of mice,The
R9160 T13396 T13397 arg1Of mice,(
R9161 T13396 T13400 arg1Of mice,were
R9162 T13396 T13401 arg2Of mice,maintained
R9163 T13398 T13397 arg2Of n = 4/cage,(
R9164 T13399 T13397 arg3Of ),(
R9165 T13401 T13393 arg1Of maintained,","
R9166 T13401 T13400 arg2Of maintained,were
R9167 T13401 T13402 arg1Of maintained,in
R9168 T13404 T13402 arg2Of room,in
R9169 T13404 T13403 arg1Of room,a
R9170 T13404 T13405 arg1Of room,with
R9171 T13408 T13405 arg2Of temperature,with
R9172 T13408 T13406 arg1Of temperature,a
R9173 T13408 T13407 arg1Of temperature,constant
R9174 T13408 T13409 arg1Of temperature,of
R9175 T13410 T13411 arg1Of 22±1°C,","
R9176 T13411 T13418 arg1Of ",",and
R9177 T13413 T13411 arg2Of humidity,","
R9178 T13413 T13412 arg1Of humidity,relative
R9179 T13413 T13414 arg1Of humidity,of
R9180 T13416 T13414 arg2Of %,of
R9181 T13416 T13415 arg1Of %,55±10
R9182 T13418 T13417 arg1Of and,","
R9183 T13418 T13423 arg1Of and,and
R9184 T13421 T13418 arg2Of cycle,and
R9185 T13421 T13419 arg1Of cycle,12-h
R9186 T13421 T13420 arg1Of cycle,light/dark
R9187 T13423 T13409 arg2Of and,of
R9188 T13423 T13422 arg1Of and,","
R9189 T13427 T13424 arg2Of chow,fed
R9190 T13427 T13425 arg1Of chow,standard
R9191 T13427 T13426 arg1Of chow,rodent
R9192 T13427 T13428 arg1Of chow,(
R9193 T13427 T13433 arg1Of chow,and
R9194 T13429 T13428 arg2Of Samyang,(
R9195 T13429 T13430 arg1Of Samyang,","
R9196 T13431 T13430 arg2Of Korea,","
R9197 T13432 T13428 arg3Of ),(
R9198 T13433 T13423 arg2Of and,and
R9199 T13438 T13433 arg2Of libitum,and
R9200 T13438 T13434 arg2Of libitum,purified
R9201 T13438 T13435 arg1Of libitum,tap
R9202 T13438 T13436 arg1Of libitum,water
R9203 T13438 T13437 arg1Of libitum,ad
R9204 T13441 T13440 arg1Of mice,CCR5+/+
R9205 T13441 T13442 arg1Of mice,(
R9206 T13441 T13445 arg1Of mice,and
R9207 T13443 T13442 arg2Of n = 20,(
R9208 T13444 T13442 arg3Of ),(
R9209 T13445 T13439 arg1Of and,The
R9210 T13445 T13456 arg1Of and,had
R9211 T13445 T13457 arg1Of and,matched
R9212 T13447 T13445 arg2Of mice,and
R9213 T13447 T13446 arg1Of mice,CCR5−/−
R9214 T13447 T13448 arg1Of mice,(
R9215 T13447 T13451 arg1Of mice,","
R9216 T13447 T13452 arg1Of mice,that
R9217 T13447 T13453 arg1Of mice,were
R9218 T13447 T13454 arg2Of mice,used
R9219 T13449 T13448 arg2Of n = 20,(
R9220 T13450 T13448 arg3Of ),(
R9221 T13454 T13453 arg2Of used,were
R9222 T13457 T13455 arg1Of matched,","
R9223 T13457 T13456 arg2Of matched,had
R9224 T13458 T13459 arg1Of ages,(
R9225 T13458 T13464 arg1Of ages,and
R9226 T13461 T13459 arg2Of weeks,(
R9227 T13461 T13460 arg1Of weeks,10–11
R9228 T13461 T13462 arg1Of weeks,old
R9229 T13463 T13459 arg3Of ),(
R9230 T13464 T13457 arg2Of and,matched
R9231 T13465 T13464 arg2Of weights,and
R9232 T13465 T13466 arg1Of weights,(
R9233 T13468 T13466 arg2Of g,(
R9234 T13468 T13467 arg1Of g,16–19
R9235 T13469 T13466 arg3Of ),(
R9236 T13471 T13470 arg1Of mice,Control
R9237 T13471 T13472 arg1Of mice,(
R9238 T13471 T13475 arg1Of mice,were
R9239 T13473 T13472 arg2Of B6129PF2/J,(
R9240 T13474 T13472 arg3Of ),(
R9241 T13478 T13475 arg2Of mice,were
R9242 T13478 T13476 arg1Of mice,F2
R9243 T13478 T13477 arg1Of mice,hybrid
R9244 T13478 T13479 arg1Of mice,from
R9245 T13481 T13482 arg1Of C57BL/6J-AW-J,and
R9246 T13483 T13482 arg2Of 129P3/J,and
R9247 T13485 T13479 arg2Of strains,from
R9248 T13485 T13480 arg1Of strains,the
R9249 T13485 T13481 arg1Of strains,C57BL/6J-AW-J
R9250 T13485 T13483 arg1Of strains,129P3/J
R9251 T13485 T13484 arg1Of strains,parental
R9252 T13487 T13486 arg1Of mice,CCR5
R9253 T13487 T13488 arg1Of mice,(
R9254 T13487 T13493 arg1Of mice,have
R9255 T13489 T13488 arg2Of B6,(
R9256 T13489 T13490 arg1Of B6,","
R9257 T13491 T13490 arg2Of 129P2-Ccr5tm1Kuz/J,","
R9258 T13492 T13488 arg3Of ),(
R9259 T13497 T13493 arg2Of region,have
R9260 T13497 T13494 arg1Of region,the
R9261 T13497 T13495 arg1Of region,entire
R9262 T13497 T13496 arg1Of region,coding
R9263 T13497 T13498 arg1Of region,of
R9264 T13501 T13498 arg2Of gene,of
R9265 T13501 T13499 arg1Of gene,the
R9266 T13501 T13500 arg1Of gene,CCR5
R9267 T13501 T13502 arg2Of gene,deleted
R9268 T13501 T13507 arg1Of gene,","
R9269 T13502 T13503 arg1Of deleted,from
R9270 T13506 T13503 arg2Of strains,from
R9271 T13506 T13504 arg1Of strains,the
R9272 T13506 T13505 arg1Of strains,parental
R9273 T13508 T13507 arg2Of B6,","
R9274 T13508 T13509 arg1Of B6,;
R9275 T13510 T13511 arg1Of 129P2-Ccr5tm1kuz,and
R9276 T13511 T13509 arg2Of and,;
R9277 T13511 T13513 arg1Of and,;
R9278 T13512 T13511 arg2Of B6,and
R9279 T13514 T13513 arg2Of 129P2-Cmkbr5tm1Kuz,;

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T13333 809-813 Protein denotes CCR5
T13332 737-741 Protein denotes CCR5
T13331 541-545 Protein denotes CCR5
T13330 515-519 Protein denotes CCR5
T13329 48-52 Protein denotes CCR5
T13328 33-37 Protein denotes CCR5
T13327 20-24 Protein denotes CCR5
T13326 4-8 Protein denotes CCR5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13539 809-813 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T13538 737-741 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T13537 541-545 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T13536 515-519 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T13535 48-52 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T13534 33-37 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T13533 20-24 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T13532 4-8 http://www.uniprot.org/uniprot/P51681 denotes CCR5

GO-BP

Id Subject Object Predicate Lexical cue
T13334 592-596 http://purl.obolibrary.org/obo/GO_0007568 denotes ages

sentences

Id Subject Object Predicate Lexical cue
T13314 737-900 Sentence denotes CCR5 mice (B6, 129P2-Ccr5tm1Kuz/J) have the entire coding region of the CCR5 gene deleted from the parental strains, B6;129P2-Ccr5tm1kuz and B6;129P2-Cmkbr5tm1Kuz.
T13313 638-736 Sentence denotes Control mice (B6129PF2/J) were F2 hybrid mice from the C57BL/6J-AW-J and 129P3/J parental strains.
T13312 511-637 Sentence denotes The CCR5+/+ mice (n = 20) and CCR5−/− mice (n = 20), that were used, had matched ages (10–11 weeks old) and weights (16–19 g).
T13311 136-510 Sentence denotes The mice were housed and bred under specific pathogen free conditions at the Laboratory Animal Research Center of Chungbuk National University, Korea. The mice (n = 4/cage) were maintained in a room with a constant temperature of 22±1°C, relative humidity of 55±10%, and 12-h light/dark cycle, and fed standard rodent chow (Samyang, Korea) and purified tap water ad libitum.
T13310 0-135 Sentence denotes The CCR5 wild type (CCR5+/+) and CCR5 knockout (CCR5−/−) mice were purchased from The Jackson Laboratory (Bar Harbor, Maine 04609 USA).
T205 0-135 Sentence denotes The CCR5 wild type (CCR5+/+) and CCR5 knockout (CCR5−/−) mice were purchased from The Jackson Laboratory (Bar Harbor, Maine 04609 USA).
T206 136-286 Sentence denotes The mice were housed and bred under specific pathogen free conditions at the Laboratory Animal Research Center of Chungbuk National University, Korea.
T207 287-510 Sentence denotes The mice (n = 4/cage) were maintained in a room with a constant temperature of 22±1°C, relative humidity of 55±10%, and 12-h light/dark cycle, and fed standard rodent chow (Samyang, Korea) and purified tap water ad libitum.
T208 511-637 Sentence denotes The CCR5+/+ mice (n = 20) and CCR5−/− mice (n = 20), that were used, had matched ages (10–11 weeks old) and weights (16–19 g).
T209 638-736 Sentence denotes Control mice (B6129PF2/J) were F2 hybrid mice from the C57BL/6J-AW-J and 129P3/J parental strains.
T210 737-900 Sentence denotes CCR5 mice (B6, 129P2-Ccr5tm1Kuz/J) have the entire coding region of the CCR5 gene deleted from the parental strains, B6;129P2-Ccr5tm1kuz and B6;129P2-Cmkbr5tm1Kuz.

simple1

Id Subject Object Predicate Lexical cue
T13342 809-813 Protein denotes CCR5
T13341 737-741 Protein denotes CCR5
T13340 541-545 Protein denotes CCR5
T13339 515-519 Protein denotes CCR5
T13338 48-52 Protein denotes CCR5
T13337 33-37 Protein denotes CCR5
T13336 20-24 Protein denotes CCR5
T13335 4-8 Protein denotes CCR5

DLUT931

Id Subject Object Predicate Lexical cue
T13549 819-826 Negative_regulation denotes deleted
T13548 38-46 Negative_regulation denotes knockout
T13547 809-813 Protein denotes CCR5
T13546 737-741 Protein denotes CCR5
T13545 541-545 Protein denotes CCR5
T13544 515-519 Protein denotes CCR5
T13543 48-52 Protein denotes CCR5
T13542 33-37 Protein denotes CCR5
T13541 20-24 Protein denotes CCR5
T13540 4-8 Protein denotes CCR5
R9284 T13542 T13548 themeOf CCR5,knockout
R9285 T13543 T13548 themeOf CCR5,knockout
R9286 T13547 T13549 themeOf CCR5,deleted

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T13590 802-853 Regulation denotes of the CCR5 gene deleted from the parental strains,
T13589 541-553 Protein denotes CCR5−/− mice
T13588 57-61 Protein denotes mice
T13587 0-28 Protein denotes The CCR5 wild type (CCR5+/+)
T13586 809-813 Protein denotes CCR5
T13585 136-144 Protein denotes The mice
T13584 737-741 Protein denotes CCR5
T13583 802-853 Protein denotes of the CCR5 gene deleted from the parental strains,
T13582 33-37 Protein denotes CCR5
T13581 303-307 Protein denotes cage
T13580 511-527 Protein denotes The CCR5+/+ mice
T13579 529-533 Entity denotes n = 
T13578 669-735 Protein denotes F2 hybrid mice from the C57BL/6J-AW-J and 129P3/J parental strains
T13577 737-746 Protein denotes CCR5 mice
T13576 287-308 Protein denotes The mice (n = 4/cage)
T13575 669-671 Protein denotes F2
T13574 555-559 Entity denotes n = 
R9291 T13583 T13590 themeOf "of the CCR5 gene deleted from the parental strains,","of the CCR5 gene deleted from the parental strains,"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13593 4-8 NNP denotes CCR5
T13592 0-3 DT denotes The
T13783 819-826 VBD denotes deleted
T13782 814-818 NN denotes gene
T13781 809-813 NNP denotes CCR5
T13780 805-808 DT denotes the
T13779 802-804 IN denotes of
T13778 795-801 NN denotes region
T13777 788-794 NN denotes coding
T13776 781-787 JJ denotes entire
T13775 777-780 DT denotes the
T13774 772-776 VBP denotes have
T13773 770-771 -RRB- denotes )
T13772 769-770 NNP denotes J
T13771 768-769 NN denotes /
T13770 752-768 JJ denotes 129P2-Ccr5tm1Kuz
T13769 750-751 , denotes ,
T13768 748-750 CD denotes B6
T13767 747-748 -LRB- denotes (
T13766 742-746 NNS denotes mice
T13765 737-741 CD denotes CCR5
T13764 735-736 . denotes .
T13763 728-735 NNS denotes strains
T13762 719-727 JJ denotes parental
T13761 711-718 NNP denotes 129P3/J
T13760 707-710 CC denotes and
T13759 693-706 NNP denotes C57BL/6J-AW-J
T13758 689-692 DT denotes the
T13757 684-688 IN denotes from
T13756 679-683 NNS denotes mice
T13755 672-678 JJ denotes hybrid
T13754 669-671 CD denotes F2
T13753 664-668 VBD denotes were
T13752 662-663 -RRB- denotes )
T13751 652-662 CD denotes B6129PF2/J
T13750 651-652 -LRB- denotes (
T13749 646-650 NNS denotes mice
T13748 638-645 NNP denotes Control
T13747 636-637 . denotes .
T13746 635-636 -RRB- denotes )
T13745 634-635 NN denotes g
T13744 631-633 CD denotes 19
T13743 628-630 CD denotes 16
T13742 627-628 -LRB- denotes (
T13741 619-626 NNS denotes weights
T13740 615-618 CC denotes and
T13739 613-614 -RRB- denotes )
T13738 610-613 JJ denotes old
T13737 604-609 NNS denotes weeks
T13736 601-603 CD denotes 11
T13735 598-600 CD denotes 10
T13734 597-598 -LRB- denotes (
T13733 592-596 NNS denotes ages
T13732 584-591 VBN denotes matched
T13731 580-583 VBD denotes had
T13730 578-579 , denotes ,
T13729 574-578 VBN denotes used
T13728 569-573 VBD denotes were
T13727 564-568 WDT denotes that
T13726 562-563 , denotes ,
T13725 561-562 -RRB- denotes )
T13724 559-561 CD denotes 20
T13723 557-558 SYM denotes =
T13722 555-556 FW denotes n
T13721 554-555 -LRB- denotes (
T13720 549-553 NNS denotes mice
T13719 547-548 NN denotes −
T13718 546-547 NN denotes /
T13717 545-546 CD denotes −
T13716 541-545 CD denotes CCR5
T13715 537-540 CC denotes and
T13714 535-536 -RRB- denotes )
T13713 533-535 CD denotes 20
T13712 531-532 SYM denotes =
T13711 529-530 FW denotes n
T13710 528-529 -LRB- denotes (
T13709 523-527 NNS denotes mice
T13708 521-522 CD denotes +
T13707 520-521 VBD denotes /
T13706 519-520 NNP denotes +
T13705 515-519 NNP denotes CCR5
T13704 511-514 DT denotes The
T13703 509-510 . denotes .
T13702 502-509 NN denotes libitum
T13701 499-501 NN denotes ad
T13700 493-498 NN denotes water
T13699 489-492 VBP denotes tap
T13698 480-488 VBN denotes purified
T13697 476-479 CC denotes and
T13696 474-475 -RRB- denotes )
T13695 469-474 NNP denotes Korea
T13694 467-468 , denotes ,
T13693 460-467 NNP denotes Samyang
T13692 459-460 -LRB- denotes (
T13691 454-458 NN denotes chow
T13690 447-453 NN denotes rodent
T13689 438-446 JJ denotes standard
T13688 434-437 VBN denotes fed
T13687 430-433 CC denotes and
T13686 428-429 , denotes ,
T13685 423-428 NN denotes cycle
T13684 412-422 NN denotes light/dark
T13683 407-411 JJ denotes 12-h
T13682 403-406 CC denotes and
T13681 401-402 , denotes ,
T13680 400-401 NN denotes %
T13679 398-400 CD denotes 10
T13678 397-398 CD denotes ±
T13677 395-397 CD denotes 55
T13676 392-394 IN denotes of
T13675 383-391 NN denotes humidity
T13674 374-382 JJ denotes relative
T13673 372-373 , denotes ,
T13672 371-372 NNP denotes C
T13671 370-371 CD denotes °
T13670 369-370 CD denotes 1
T13669 368-369 NN denotes ±
T13668 366-368 CD denotes 22
T13667 363-365 IN denotes of
T13666 351-362 NN denotes temperature
T13665 342-350 JJ denotes constant
T13664 340-341 DT denotes a
T13663 335-339 IN denotes with
T13662 330-334 NN denotes room
T13661 328-329 DT denotes a
T13660 325-327 IN denotes in
T13659 314-324 VBN denotes maintained
T13658 309-313 VBD denotes were
T13657 307-308 -RRB- denotes )
T13656 301-307 CD denotes 4/cage
T13655 299-300 SYM denotes =
T13654 297-298 FW denotes n
T13653 296-297 -LRB- denotes (
T13652 291-295 NNS denotes mice
T13651 287-290 DT denotes The
T13650 285-286 . denotes .
T13649 280-285 NNP denotes Korea
T13648 278-279 , denotes ,
T13647 268-278 NNP denotes University
T13646 259-267 NNP denotes National
T13645 250-258 NNP denotes Chungbuk
T13644 247-249 IN denotes of
T13643 240-246 NNP denotes Center
T13642 231-239 NNP denotes Research
T13641 224-230 NNP denotes Animal
T13640 213-223 NNP denotes Laboratory
T13639 209-212 DT denotes the
T13638 206-208 IN denotes at
T13637 195-205 NNS denotes conditions
T13636 190-194 JJ denotes free
T13635 181-189 NN denotes pathogen
T13634 172-180 JJ denotes specific
T13633 166-171 IN denotes under
T13632 161-165 VBN denotes bred
T13631 157-160 CC denotes and
T13630 150-156 VBN denotes housed
T13629 145-149 VBD denotes were
T13628 140-144 NNS denotes mice
T13627 136-139 DT denotes The
T13626 134-135 . denotes .
T13625 133-134 -RRB- denotes )
T13624 130-133 NNP denotes USA
T13623 124-129 CD denotes 04609
T13622 118-123 NNP denotes Maine
T13621 116-117 , denotes ,
T13620 110-116 NNP denotes Harbor
T13619 106-109 NNP denotes Bar
T13618 105-106 -LRB- denotes (
T13617 94-104 NNP denotes Laboratory
T13616 86-93 NNP denotes Jackson
T13615 82-85 DT denotes The
T13614 77-81 IN denotes from
T13613 67-76 VBN denotes purchased
T13612 62-66 VBD denotes were
T13611 57-61 NNS denotes mice
T13610 55-56 -RRB- denotes )
T13609 54-55 NN denotes −
T13608 53-54 NN denotes /
T13607 52-53 CD denotes −
T13606 48-52 CD denotes CCR5
T13605 47-48 -LRB- denotes (
T13604 38-46 NN denotes knockout
T13603 33-37 CD denotes CCR5
T13602 29-32 CC denotes and
T13601 27-28 -RRB- denotes )
T13600 26-27 NN denotes +
T13599 25-26 NN denotes /
T13598 24-25 CD denotes +
T13597 20-24 CD denotes CCR5
T13596 19-20 -LRB- denotes (
T13595 14-18 NN denotes type
T13594 9-13 JJ denotes wild
T13796 899-900 . denotes .
T13795 881-899 NNP denotes 129P2-Cmkbr5tm1Kuz
T13794 880-881 : denotes ;
T13793 878-880 NNP denotes B6
T13792 874-877 CC denotes and
T13791 857-873 NNP denotes 129P2-Ccr5tm1kuz
T13790 856-857 : denotes ;
T13789 854-856 NNP denotes B6
T13788 852-853 , denotes ,
T13787 845-852 NNS denotes strains
T13786 836-844 JJ denotes parental
T13785 832-835 DT denotes the
T13784 827-831 IN denotes from
R9293 T13592 T13595 det The,type
R9294 T13593 T13595 nmod CCR5,type
R9295 T13594 T13595 amod wild,type
R9296 T13595 T13613 nsubjpass type,purchased
R9297 T13596 T13595 punct (,type
R9298 T13597 T13600 meta CCR5,+
R9299 T13598 T13600 nummod +,+
R9300 T13599 T13600 compound /,+
R9301 T13600 T13595 appos +,type
R9302 T13601 T13600 punct ),+
R9303 T13602 T13595 cc and,type
R9304 T13603 T13604 nummod CCR5,knockout
R9305 T13604 T13595 conj knockout,type
R9306 T13605 T13609 punct (,−
R9307 T13606 T13607 nummod CCR5,−
R9308 T13607 T13609 nummod −,−
R9309 T13608 T13609 compound /,−
R9310 T13609 T13604 appos −,knockout
R9311 T13610 T13609 punct ),−
R9312 T13611 T13604 conj mice,knockout
R9313 T13612 T13613 auxpass were,purchased
R9314 T13613 T13613 ROOT purchased,purchased
R9315 T13614 T13613 prep from,purchased
R9316 T13615 T13617 det The,Laboratory
R9317 T13616 T13617 compound Jackson,Laboratory
R9318 T13617 T13614 pobj Laboratory,from
R9319 T13618 T13617 punct (,Laboratory
R9320 T13619 T13620 compound Bar,Harbor
R9321 T13620 T13617 appos Harbor,Laboratory
R9322 T13621 T13620 punct ",",Harbor
R9323 T13622 T13620 appos Maine,Harbor
R9324 T13623 T13624 nummod 04609,USA
R9325 T13624 T13620 appos USA,Harbor
R9326 T13625 T13617 punct ),Laboratory
R9327 T13626 T13613 punct .,purchased
R9328 T13627 T13628 det The,mice
R9329 T13628 T13630 nsubjpass mice,housed
R9330 T13629 T13630 auxpass were,housed
R9331 T13630 T13630 ROOT housed,housed
R9332 T13631 T13630 cc and,housed
R9333 T13632 T13630 conj bred,housed
R9334 T13633 T13632 prep under,bred
R9335 T13634 T13637 amod specific,conditions
R9336 T13635 T13637 amod pathogen,conditions
R9337 T13636 T13637 amod free,conditions
R9338 T13637 T13633 pobj conditions,under
R9339 T13638 T13632 prep at,bred
R9340 T13639 T13643 det the,Center
R9341 T13640 T13643 compound Laboratory,Center
R9342 T13641 T13643 compound Animal,Center
R9343 T13642 T13643 compound Research,Center
R9344 T13643 T13638 pobj Center,at
R9345 T13644 T13643 prep of,Center
R9346 T13645 T13647 compound Chungbuk,University
R9347 T13646 T13647 compound National,University
R9348 T13647 T13644 pobj University,of
R9349 T13648 T13647 punct ",",University
R9350 T13649 T13647 npadvmod Korea,University
R9351 T13650 T13630 punct .,housed
R9352 T13651 T13652 det The,mice
R9353 T13652 T13659 nsubjpass mice,maintained
R9354 T13653 T13652 punct (,mice
R9355 T13654 T13652 appos n,mice
R9356 T13655 T13656 punct =,4/cage
R9357 T13656 T13654 pobj 4/cage,n
R9358 T13657 T13652 punct ),mice
R9359 T13658 T13659 auxpass were,maintained
R9360 T13659 T13659 ROOT maintained,maintained
R9361 T13660 T13659 prep in,maintained
R9362 T13661 T13662 det a,room
R9363 T13662 T13660 pobj room,in
R9364 T13663 T13662 prep with,room
R9365 T13664 T13666 det a,temperature
R9366 T13665 T13666 amod constant,temperature
R9367 T13666 T13663 pobj temperature,with
R9368 T13667 T13666 prep of,temperature
R9369 T13668 T13672 nummod 22,C
R9370 T13669 T13672 compound ±,C
R9371 T13670 T13669 nummod 1,±
R9372 T13671 T13669 nummod °,±
R9373 T13672 T13667 pobj C,of
R9374 T13673 T13672 punct ",",C
R9375 T13674 T13675 amod relative,humidity
R9376 T13675 T13672 appos humidity,C
R9377 T13676 T13675 prep of,humidity
R9378 T13677 T13680 nummod 55,%
R9379 T13678 T13680 nummod ±,%
R9380 T13679 T13680 nummod 10,%
R9381 T13680 T13676 pobj %,of
R9382 T13681 T13672 punct ",",C
R9383 T13682 T13672 cc and,C
R9384 T13683 T13685 amod 12-h,cycle
R9385 T13684 T13685 compound light/dark,cycle
R9386 T13685 T13672 conj cycle,C
R9387 T13686 T13659 punct ",",maintained
R9388 T13687 T13659 cc and,maintained
R9389 T13688 T13659 conj fed,maintained
R9390 T13689 T13691 amod standard,chow
R9391 T13690 T13691 compound rodent,chow
R9392 T13691 T13688 dobj chow,fed
R9393 T13692 T13691 punct (,chow
R9394 T13693 T13691 appos Samyang,chow
R9395 T13694 T13693 punct ",",Samyang
R9396 T13695 T13693 appos Korea,Samyang
R9397 T13696 T13695 punct ),Korea
R9398 T13697 T13688 cc and,fed
R9399 T13698 T13688 conj purified,fed
R9400 T13699 T13659 conj tap,maintained
R9401 T13700 T13701 compound water,ad
R9402 T13701 T13702 compound ad,libitum
R9403 T13702 T13699 dobj libitum,tap
R9404 T13703 T13659 punct .,maintained
R9405 T13704 T13706 det The,+
R9406 T13705 T13706 compound CCR5,+
R9407 T13706 T13707 nsubj +,/
R9408 T13707 T13707 ROOT /,/
R9409 T13708 T13709 nummod +,mice
R9410 T13709 T13707 dobj mice,/
R9411 T13710 T13713 punct (,20
R9412 T13711 T13713 advmod n,20
R9413 T13712 T13713 punct =,20
R9414 T13713 T13709 appos 20,mice
R9415 T13714 T13713 punct ),20
R9416 T13715 T13713 cc and,20
R9417 T13716 T13720 nummod CCR5,mice
R9418 T13717 T13720 nummod −,mice
R9419 T13718 T13720 nmod /,mice
R9420 T13719 T13720 compound −,mice
R9421 T13720 T13709 appos mice,mice
R9422 T13721 T13724 punct (,20
R9423 T13722 T13724 advmod n,20
R9424 T13723 T13724 punct =,20
R9425 T13724 T13720 appos 20,mice
R9426 T13725 T13720 punct ),mice
R9427 T13726 T13709 punct ",",mice
R9428 T13727 T13729 nsubjpass that,used
R9429 T13728 T13729 auxpass were,used
R9430 T13729 T13709 relcl used,mice
R9431 T13730 T13707 punct ",",/
R9432 T13731 T13732 aux had,matched
R9433 T13732 T13707 conj matched,/
R9434 T13733 T13732 dobj ages,matched
R9435 T13734 T13733 punct (,ages
R9436 T13735 T13733 appos 10,ages
R9437 T13736 T13737 nummod 11,weeks
R9438 T13737 T13738 npadvmod weeks,old
R9439 T13738 T13733 amod old,ages
R9440 T13739 T13733 punct ),ages
R9441 T13740 T13733 cc and,ages
R9442 T13741 T13733 conj weights,ages
R9443 T13742 T13733 punct (,ages
R9444 T13743 T13733 appos 16,ages
R9445 T13744 T13745 nummod 19,g
R9446 T13745 T13733 appos g,ages
R9447 T13746 T13733 punct ),ages
R9448 T13747 T13707 punct .,/
R9449 T13748 T13749 compound Control,mice
R9450 T13749 T13753 nsubj mice,were
R9451 T13750 T13749 punct (,mice
R9452 T13751 T13749 appos B6129PF2/J,mice
R9453 T13752 T13749 punct ),mice
R9454 T13753 T13753 ROOT were,were
R9455 T13754 T13756 nummod F2,mice
R9456 T13755 T13756 amod hybrid,mice
R9457 T13756 T13753 attr mice,were
R9458 T13757 T13756 prep from,mice
R9459 T13758 T13759 det the,C57BL/6J-AW-J
R9460 T13759 T13763 nmod C57BL/6J-AW-J,strains
R9461 T13760 T13759 cc and,C57BL/6J-AW-J
R9462 T13761 T13759 conj 129P3/J,C57BL/6J-AW-J
R9463 T13762 T13763 amod parental,strains
R9464 T13763 T13757 pobj strains,from
R9465 T13764 T13753 punct .,were
R9466 T13765 T13766 nummod CCR5,mice
R9467 T13766 T13774 nsubj mice,have
R9468 T13767 T13766 punct (,mice
R9469 T13768 T13766 appos B6,mice
R9470 T13769 T13768 punct ",",B6
R9471 T13770 T13772 amod 129P2-Ccr5tm1Kuz,J
R9472 T13771 T13772 compound /,J
R9473 T13772 T13768 appos J,B6
R9474 T13773 T13766 punct ),mice
R9475 T13774 T13795 ccomp have,129P2-Cmkbr5tm1Kuz
R9476 T13775 T13778 det the,region
R9477 T13776 T13778 amod entire,region
R9478 T13777 T13778 compound coding,region
R9479 T13778 T13774 dobj region,have
R9480 T13779 T13778 prep of,region
R9481 T13780 T13782 det the,gene
R9482 T13781 T13782 compound CCR5,gene
R9483 T13782 T13779 pobj gene,of
R9484 T13783 T13774 conj deleted,have
R9485 T13784 T13783 prep from,deleted
R9486 T13785 T13787 det the,strains
R9487 T13786 T13787 amod parental,strains
R9488 T13787 T13784 pobj strains,from
R9489 T13788 T13783 punct ",",deleted
R9490 T13789 T13783 conj B6,deleted
R9491 T13790 T13789 punct ;,B6
R9492 T13791 T13789 conj 129P2-Ccr5tm1kuz,B6
R9493 T13792 T13791 cc and,129P2-Ccr5tm1kuz
R9494 T13793 T13791 conj B6,129P2-Ccr5tm1kuz
R9495 T13794 T13795 punct ;,129P2-Cmkbr5tm1Kuz
R9496 T13795 T13795 ROOT 129P2-Cmkbr5tm1Kuz,129P2-Cmkbr5tm1Kuz
R9497 T13796 T13795 punct .,129P2-Cmkbr5tm1Kuz

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13570 809-818 Protein denotes CCR5 gene
T13569 33-37 Protein denotes CCR5
T13568 4-8 Protein denotes CCR5