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PMC:3342329 / 216-420 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T91 169-173 Protein denotes CCR5
T90 154-158 Protein denotes CCR5
T89 125-129 Protein denotes CCR5
T88 110-114 Protein denotes CCR5
T87 45-55 Gene_expression denotes expression
T86 39-43 Protein denotes CCR5
T85 8-37 Protein denotes C-C chemokine receptor type 5
T66 169-173 Protein denotes CCR5
T65 154-158 Protein denotes CCR5
T64 125-129 Protein denotes CCR5
T63 110-114 Protein denotes CCR5
T62 39-43 Protein denotes CCR5
T61 8-37 Protein denotes C-C chemokine receptor type 5
R17 T85 T87 themeOf C-C chemokine receptor type 5,expression
R18 T86 T85 equivalentTo CCR5,C-C chemokine receptor type 5

testone

Id Subject Object Predicate Lexical cue
T30 169-173 Protein denotes CCR5
T29 154-158 Protein denotes CCR5
T28 125-129 Protein denotes CCR5
T27 110-114 Protein denotes CCR5
T26 39-43 Protein denotes CCR5
T25 8-37 Protein denotes C-C chemokine receptor type 5
T47 45-55 Gene_expression denotes expression
R3 T25 T47 themeOf C-C chemokine receptor type 5,expression
R4 T26 T25 equivalentTo CCR5,C-C chemokine receptor type 5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T640 45-55 Gene_expression denotes expression
T639 115-123 Negative_regulation denotes knockout
T622 169-173 Protein denotes CCR5
T621 154-158 Protein denotes CCR5
T620 125-129 Protein denotes CCR5
T619 110-114 Protein denotes CCR5
T618 39-43 Protein denotes CCR5
T617 8-37 Protein denotes C-C chemokine receptor type 5
R338 T617 T640 themeOf C-C chemokine receptor type 5,expression
R339 T618 T640 themeOf CCR5,expression
R340 T619 T639 themeOf CCR5,knockout
R341 T620 T639 themeOf CCR5,knockout

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T766 45-55 Gene_expression denotes expression
T765 115-123 Negative_regulation denotes knockout
T748 169-173 Protein denotes CCR5
T747 154-158 Protein denotes CCR5
T746 125-129 Protein denotes CCR5
T745 110-114 Protein denotes CCR5
T744 39-43 Protein denotes CCR5
T743 8-37 Protein denotes C-C chemokine receptor type 5
R407 T743 T766 themeOf C-C chemokine receptor type 5,expression
R408 T744 T766 themeOf CCR5,expression
R409 T745 T765 themeOf CCR5,knockout
R410 T746 T765 themeOf CCR5,knockout

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T301 107-109 IN denotes in
T300 100-106 NN denotes growth
T299 91-99 NN denotes melanoma
T298 82-90 VB denotes compared
T297 79-81 PRP denotes we
T296 77-78 -COMMA- denotes ,
T295 66-77 NN denotes development
T294 60-65 NN denotes tumor
T293 56-59 CC denotes and
T292 45-55 NN denotes expression
T291 43-44 -RRB- denotes )
T290 39-43 NN denotes CCR5
T289 38-39 -LRB- denotes (
T288 36-37 CD denotes 5
T287 31-35 NN denotes type
T286 22-30 NN denotes receptor
T285 12-21 NN denotes chemokine
T284 8-11 NN denotes C-C
T283 5-7 IN denotes of
T319 197-202 NN denotes tumor
T318 189-196 VB denotes reduced
T317 182-188 VB denotes showed
T316 177-181 NN denotes mice
T315 169-176 NN denotes CCR5−/−
T314 163-167 NN denotes mice
T313 161-162 -RRB- denotes )
T312 154-161 NN denotes CCR5+/+
T311 153-154 -LRB- denotes (
T310 148-152 NN denotes type
T309 143-147 JJ denotes wild
T308 139-142 CC denotes and
T307 134-138 NN denotes mice
T306 132-133 -RRB- denotes )
T305 125-132 NN denotes CCR5−/−
T304 124-125 -LRB- denotes (
T303 115-123 NN denotes knockout
T302 110-114 NN denotes CCR5
R65 T290 T289 arg2Of CCR5,(
R66 T291 T289 arg3Of ),(
R67 T292 T284 arg1Of expression,C-C
R68 T292 T285 arg1Of expression,chemokine
R69 T292 T286 arg1Of expression,receptor
R70 T292 T287 arg1Of expression,type
R71 T292 T288 arg1Of expression,5
R72 T292 T289 arg1Of expression,(
R73 T292 T293 arg1Of expression,and
R74 T293 T283 arg2Of and,of
R75 T295 T293 arg2Of development,and
R76 T295 T294 arg1Of development,tumor
R78 T297 T298 arg1Of we,compared
R80 T298 T296 arg1Of compared,","
R81 T300 T298 arg2Of growth,compared
R82 T300 T299 arg1Of growth,melanoma
R83 T300 T301 arg1Of growth,in
R84 T303 T302 arg1Of knockout,CCR5
R85 T303 T304 arg1Of knockout,(
R86 T305 T304 arg2Of CCR5−/−,(
R87 T306 T304 arg3Of ),(
R88 T307 T303 arg1Of mice,knockout
R89 T307 T308 arg1Of mice,and
R90 T308 T301 arg2Of and,in
R91 T310 T309 arg1Of type,wild
R92 T310 T311 arg1Of type,(
R93 T312 T311 arg2Of CCR5+/+,(
R94 T313 T311 arg3Of ),(
R95 T314 T308 arg2Of mice,and
R96 T314 T310 arg1Of mice,type
R97 T316 T315 arg1Of mice,CCR5−/−
R98 T316 T317 arg1Of mice,showed

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T172 169-173 Protein denotes CCR5
T171 154-158 Protein denotes CCR5
T170 125-129 Protein denotes CCR5
T169 110-114 Protein denotes CCR5
T168 39-43 Protein denotes CCR5
T167 8-37 Protein denotes C-C chemokine receptor type 5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T538 169-173 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T537 154-158 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T536 125-129 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T535 110-114 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T534 39-43 http://www.uniprot.org/uniprot/P51681 denotes CCR5

GO-BP

Id Subject Object Predicate Lexical cue
T188 100-106 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T187 66-77 http://purl.obolibrary.org/obo/GO_0032502 denotes development

simple1

Id Subject Object Predicate Lexical cue
T245 169-173 Protein denotes CCR5
T244 154-158 Protein denotes CCR5
T243 125-129 Protein denotes CCR5
T242 110-114 Protein denotes CCR5
T241 39-43 Protein denotes CCR5
T240 8-37 Protein denotes C-C chemokine receptor type 5

DLUT931

Id Subject Object Predicate Lexical cue
T579 115-123 Negative_regulation denotes knockout
T578 45-55 Gene_expression denotes expression
T562 169-173 Protein denotes CCR5
T561 154-158 Protein denotes CCR5
T560 125-129 Protein denotes CCR5
T559 110-114 Protein denotes CCR5
T558 39-43 Protein denotes CCR5
T557 8-37 Protein denotes C-C chemokine receptor type 5
R314 T557 T578 themeOf C-C chemokine receptor type 5,expression
R315 T558 T578 themeOf CCR5,expression
R316 T559 T579 themeOf CCR5,knockout
R317 T560 T579 themeOf CCR5,knockout

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T809 39-43 Protein denotes CCR5
T800 134-138 Protein denotes mice
T796 134-167 Protein denotes mice and wild type (CCR5+/+) mice
T794 177-181 Protein denotes mice
T790 12-21 Protein denotes chemokine
T787 31-44 Protein denotes type 5 (CCR5)
T786 110-114 Protein denotes CCR5
T773 8-55 Protein denotes C-C chemokine receptor type 5 (CCR5) expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T891 197-202 NN denotes tumor
T890 189-196 VBN denotes reduced
T889 182-188 VBD denotes showed
T888 177-181 NNS denotes mice
T887 175-176 NN denotes −
T886 174-175 NN denotes /
T885 173-174 CD denotes −
T884 169-173 CD denotes CCR5
T883 167-168 . denotes .
T882 163-167 NNS denotes mice
T881 161-162 -RRB- denotes )
T880 160-161 NN denotes +
T879 159-160 NN denotes /
T878 158-159 CD denotes +
T877 154-158 CD denotes CCR5
T876 153-154 -LRB- denotes (
T875 148-152 NN denotes type
T874 143-147 JJ denotes wild
T873 139-142 CC denotes and
T872 134-138 NNS denotes mice
T871 132-133 -RRB- denotes )
T870 131-132 NN denotes −
T869 130-131 NN denotes /
T868 129-130 CD denotes −
T867 125-129 CD denotes CCR5
T866 124-125 -LRB- denotes (
T865 115-123 NN denotes knockout
T864 110-114 CD denotes CCR5
T863 107-109 IN denotes in
T862 100-106 NN denotes growth
T861 91-99 NN denotes melanoma
T860 82-90 VBD denotes compared
T859 79-81 PRP denotes we
T858 77-78 , denotes ,
T857 66-77 NN denotes development
T856 60-65 NN denotes tumor
T855 56-59 CC denotes and
T854 45-55 NN denotes expression
T853 43-44 -RRB- denotes )
T852 39-43 NNS denotes CCR5
T851 38-39 -LRB- denotes (
T850 36-37 CD denotes 5
T849 31-35 NN denotes type
T848 22-30 NN denotes receptor
T847 12-21 NN denotes chemokine
T846 8-11 NNP denotes C-C
T845 5-7 IN denotes of
R451 T846 T849 compound C-C,type
R452 T847 T848 compound chemokine,receptor
R453 T848 T849 compound receptor,type
R454 T849 T845 pobj type,of
R455 T850 T849 nummod 5,type
R456 T851 T852 punct (,CCR5
R457 T852 T849 appos CCR5,type
R458 T853 T852 punct ),CCR5
R459 T854 T852 conj expression,CCR5
R460 T855 T854 cc and,expression
R461 T856 T857 compound tumor,development
R462 T857 T854 conj development,expression
R463 T858 T860 punct ",",compared
R464 T859 T860 nsubj we,compared
R465 T860 T860 ROOT compared,compared
R466 T861 T862 compound melanoma,growth
R467 T862 T860 dobj growth,compared
R468 T863 T862 prep in,growth
R469 T864 T865 nummod CCR5,knockout
R470 T865 T863 pobj knockout,in
R471 T866 T865 punct (,knockout
R472 T867 T868 nummod CCR5,−
R473 T868 T870 nummod −,−
R474 T869 T870 compound /,−
R475 T870 T865 appos −,knockout
R476 T871 T865 punct ),knockout
R477 T872 T863 pobj mice,in
R478 T873 T872 cc and,mice
R479 T874 T875 amod wild,type
R480 T875 T872 conj type,mice
R481 T876 T880 punct (,+
R482 T877 T880 nummod CCR5,+
R483 T878 T880 nummod +,+
R484 T879 T880 compound /,+
R485 T880 T875 appos +,type
R486 T881 T880 punct ),+
R487 T882 T875 conj mice,type
R488 T883 T860 punct .,compared
R489 T884 T888 nummod CCR5,mice
R490 T885 T888 nummod −,mice
R491 T886 T888 compound /,mice
R492 T887 T888 compound −,mice
R493 T888 T889 nsubj mice,showed
R494 T889 T889 ROOT showed,showed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T652 45-55 Gene_expression denotes expression
T651 45-55 Gene_expression denotes expression
T650 110-114 Protein denotes CCR5
T649 39-43 Protein denotes CCR5
T648 8-37 Protein denotes C-C chemokine receptor type 5
R349 T648 T651 themeOf C-C chemokine receptor type 5,expression
R350 T649 T652 themeOf CCR5,expression