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PMC:3342329 / 1033-1293 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T104 160-166 Protein denotes IL-1Ra
T103 104-108 Protein denotes CCR5
T102 67-76 Negative_regulation denotes decreased
T101 55-61 Protein denotes C-IAP1
T74 160-166 Protein denotes IL-1Ra
T73 104-108 Protein denotes CCR5
T72 55-61 Protein denotes C-IAP1

testone

Id Subject Object Predicate Lexical cue
T38 160-166 Protein denotes IL-1Ra
T37 104-108 Protein denotes CCR5
T36 55-61 Protein denotes C-IAP1
T55 67-76 Negative_regulation denotes decreased
T54 21-31 Gene_expression denotes expression
R7 T36 T55 themeOf C-IAP1,decreased
R8 T36 T54 themeOf C-IAP1,expression
R13 T54 T55 themeOf expression,decreased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T644 223-231 Positive_regulation denotes elevated
T643 67-76 Negative_regulation denotes decreased
T642 21-31 Gene_expression denotes expression
T630 160-166 Protein denotes IL-1Ra
T629 104-108 Protein denotes CCR5
T628 55-61 Protein denotes C-IAP1
R344 T628 T642 themeOf C-IAP1,expression
R345 T628 T643 themeOf C-IAP1,decreased
R346 T630 T644 themeOf IL-1Ra,elevated

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T770 223-231 Positive_regulation denotes elevated
T769 21-31 Gene_expression denotes expression
T768 67-76 Negative_regulation denotes decreased
T756 160-166 Protein denotes IL-1Ra
T755 104-108 Protein denotes CCR5
T754 55-61 Protein denotes C-IAP1
R413 T754 T769 themeOf C-IAP1,expression
R414 T754 T768 themeOf C-IAP1,decreased
R415 T756 T770 themeOf IL-1Ra,elevated
R418 T769 T768 themeOf expression,decreased

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T467 252-258 NN denotes spleen
T466 248-251 CC denotes and
T465 241-247 NN denotes tissue
T464 235-240 NN denotes tumor
T463 232-234 IN denotes in
T462 223-231 VB denotes elevated
T461 209-222 RB denotes significantly
T460 205-208 VB denotes was
T459 203-204 -COMMA- denotes ,
T458 195-203 NN denotes cytokine
T457 183-194 JJ denotes suppressive
T456 176-182 NN denotes growth
T455 170-175 NN denotes tumor
T454 168-169 DT denotes a
T453 166-167 -COMMA- denotes ,
T452 160-166 NN denotes IL-1Ra
T451 157-159 IN denotes of
T450 151-156 NN denotes level
T449 147-150 DT denotes the
T448 142-146 IN denotes that
T447 136-141 VB denotes found
T446 133-135 PRP denotes we
T445 131-132 -COMMA- denotes ,
T444 118-131 RB denotes Interestingly
T443 112-116 NN denotes mice
T442 104-111 NN denotes CCR5−/−
T441 101-103 IN denotes of
T440 93-100 NN denotes tissues
T439 84-92 NN denotes melanoma
T438 80-83 DT denotes the
T437 77-79 IN denotes in
T436 67-76 VB denotes decreased
T435 63-66 VB denotes was
T434 61-62 -COMMA- denotes ,
T433 55-61 NN denotes C-IAP1
T432 53-54 -COMMA- denotes ,
T431 48-53 NN denotes Bcl-2
T430 45-47 IN denotes as
T429 40-44 JJ denotes such
T428 38-39 -COMMA- denotes ,
T427 32-38 NN denotes levels
T426 21-31 NN denotes expression
T425 13-20 NN denotes protein
T424 4-12 NN denotes survival
T423 0-3 DT denotes the
R204 T427 T423 arg1Of levels,the
R205 T427 T424 arg1Of levels,survival
R206 T427 T425 arg1Of levels,protein
R207 T427 T426 arg1Of levels,expression
R208 T427 T428 arg1Of levels,","
R209 T427 T430 arg1Of levels,as
R210 T427 T435 arg1Of levels,was
R211 T427 T436 arg2Of levels,decreased
R212 T430 T429 arg1Of as,such
R213 T431 T430 arg2Of Bcl-2,as
R214 T431 T432 arg1Of Bcl-2,","
R215 T433 T432 arg2Of C-IAP1,","
R217 T436 T434 arg1Of decreased,","
R218 T436 T435 arg2Of decreased,was
R219 T436 T437 arg1Of decreased,in
R220 T440 T437 arg2Of tissues,in
R221 T440 T438 arg1Of tissues,the
R222 T440 T439 arg1Of tissues,melanoma
R223 T440 T441 arg1Of tissues,of
R224 T443 T441 arg2Of mice,of
R225 T443 T442 arg1Of mice,CCR5−/−
R226 T446 T447 arg1Of we,found
R227 T447 T444 arg1Of found,Interestingly
R228 T447 T445 arg1Of found,","
R229 T450 T449 arg1Of level,the
R230 T450 T451 arg1Of level,of
R231 T450 T453 arg1Of level,","
R232 T450 T460 arg1Of level,was
R233 T450 T462 arg2Of level,elevated
R234 T452 T451 arg2Of IL-1Ra,of
R235 T458 T453 arg2Of cytokine,","
R236 T458 T454 arg1Of cytokine,a
R237 T458 T455 arg1Of cytokine,tumor
R238 T458 T456 arg1Of cytokine,growth
R239 T458 T457 arg1Of cytokine,suppressive
R240 T462 T447 arg2Of elevated,found
R241 T462 T448 arg1Of elevated,that
R242 T462 T459 arg1Of elevated,","
R243 T462 T460 arg2Of elevated,was
R244 T462 T461 arg1Of elevated,significantly
R245 T462 T463 arg1Of elevated,in
R246 T465 T464 arg1Of tissue,tumor
R247 T465 T466 arg1Of tissue,and
R248 T466 T463 arg2Of and,in
R250 T467 T466 arg2Of spleen,and

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T180 160-166 Protein denotes IL-1Ra
T179 104-108 Protein denotes CCR5
T178 55-61 Protein denotes C-IAP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T552 55-61 http://www.uniprot.org/uniprot/Q13490 denotes C-IAP1
T542 104-108 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T532 160-166 http://www.uniprot.org/uniprot/P18510 denotes IL-1Ra

UBERON-AE

Id Subject Object Predicate Lexical cue
T118 252-258 http://purl.obolibrary.org/obo/UBERON_0002106 denotes spleen
T116 241-247 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T115 93-100 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

GO-BP

Id Subject Object Predicate Lexical cue
T191 176-182 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

simple1

Id Subject Object Predicate Lexical cue
T253 160-166 Protein denotes IL-1Ra
T252 104-108 Protein denotes CCR5
T251 55-61 Protein denotes C-IAP1

DLUT931

Id Subject Object Predicate Lexical cue
T584 223-231 Positive_regulation denotes elevated
T583 67-76 Negative_regulation denotes decreased
T582 21-31 Gene_expression denotes expression
T570 160-166 Protein denotes IL-1Ra
T569 104-108 Protein denotes CCR5
T568 55-61 Protein denotes C-IAP1
R320 T568 T582 themeOf C-IAP1,expression
R321 T570 T584 themeOf IL-1Ra,elevated
R326 T582 T583 themeOf expression,decreased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T816 13-31 Gene_expression denotes protein expression
T813 13-20 Protein denotes protein
T812 112-116 Protein denotes mice
T811 48-53 Protein denotes Bcl-2
T806 55-62 Protein denotes C-IAP1,
T804 195-204 Protein denotes cytokine,
T798 160-167 Protein denotes IL-1Ra,
R424 T813 T816 themeOf protein,protein expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1055 252-258 NN denotes spleen
T1054 248-251 CC denotes and
T1053 241-247 NN denotes tissue
T1052 235-240 NN denotes tumor
T1051 232-234 IN denotes in
T1050 223-231 VBN denotes elevated
T1049 209-222 RB denotes significantly
T1048 205-208 VBD denotes was
T1047 203-204 , denotes ,
T1046 195-203 NN denotes cytokine
T1045 183-194 JJ denotes suppressive
T1044 176-182 NN denotes growth
T1043 170-175 NN denotes tumor
T1042 168-169 DT denotes a
T1041 166-167 , denotes ,
T1040 160-166 NN denotes IL-1Ra
T1039 157-159 IN denotes of
T1038 151-156 NN denotes level
T1037 147-150 DT denotes the
T1036 142-146 IN denotes that
T1035 136-141 VBD denotes found
T1034 133-135 PRP denotes we
T1033 131-132 , denotes ,
T1032 118-131 RB denotes Interestingly
T1031 116-117 . denotes .
T1030 112-116 NNS denotes mice
T1029 110-111 NN denotes −
T1028 109-110 NN denotes /
T1027 108-109 CD denotes −
T1026 104-108 CD denotes CCR5
T1025 101-103 IN denotes of
T1024 93-100 NNS denotes tissues
T1023 84-92 NN denotes melanoma
T1022 80-83 DT denotes the
T1021 77-79 IN denotes in
T1020 67-76 VBN denotes decreased
T1019 63-66 VBD denotes was
T1018 61-62 , denotes ,
T1017 55-61 NNP denotes C-IAP1
T1016 53-54 , denotes ,
T1015 48-53 NN denotes Bcl-2
T1014 45-47 IN denotes as
T1013 40-44 JJ denotes such
T1012 38-39 , denotes ,
T1011 32-38 NNS denotes levels
T1010 21-31 NN denotes expression
T1009 13-20 NN denotes protein
T1008 4-12 NN denotes survival
T1007 0-3 DT denotes the
R612 T1007 T1011 det the,levels
R613 T1008 T1009 compound survival,protein
R614 T1009 T1011 compound protein,levels
R615 T1010 T1011 compound expression,levels
R616 T1011 T1020 nsubjpass levels,decreased
R617 T1012 T1011 punct ",",levels
R618 T1013 T1014 amod such,as
R619 T1014 T1011 prep as,levels
R620 T1015 T1014 pobj Bcl-2,as
R621 T1016 T1015 punct ",",Bcl-2
R622 T1017 T1015 conj C-IAP1,Bcl-2
R623 T1018 T1020 punct ",",decreased
R624 T1019 T1020 auxpass was,decreased
R626 T1021 T1020 prep in,decreased
R627 T1022 T1024 det the,tissues
R629 T1023 T1024 compound melanoma,tissues
R630 T1024 T1021 pobj tissues,in
R631 T1025 T1024 prep of,tissues
R632 T1026 T1030 nummod CCR5,mice
R633 T1027 T1030 nummod −,mice
R634 T1028 T1030 nmod /,mice
R635 T1029 T1030 compound −,mice
R636 T1030 T1025 pobj mice,of
R638 T1032 T1035 advmod Interestingly,found
R639 T1033 T1035 punct ",",found
R640 T1034 T1035 nsubj we,found
R641 T1035 T1035 ROOT found,found
R642 T1036 T1050 mark that,elevated
R643 T1037 T1038 det the,level
R644 T1038 T1050 nsubjpass level,elevated
R645 T1039 T1038 prep of,level
R646 T1040 T1039 pobj IL-1Ra,of
R647 T1041 T1040 punct ",",IL-1Ra
R648 T1042 T1044 det a,growth
R649 T1043 T1044 compound tumor,growth
R650 T1044 T1040 appos growth,IL-1Ra
R651 T1045 T1046 amod suppressive,cytokine
R652 T1046 T1044 appos cytokine,growth
R653 T1047 T1050 punct ",",elevated
R654 T1048 T1050 auxpass was,elevated
R655 T1049 T1050 advmod significantly,elevated
R656 T1050 T1035 ccomp elevated,found
R657 T1051 T1050 prep in,elevated
R658 T1052 T1053 compound tumor,tissue
R659 T1053 T1051 pobj tissue,in
R660 T1054 T1053 cc and,tissue
R661 T1055 T1053 conj spleen,tissue

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T683 223-231 Positive_regulation denotes elevated
T681 160-166 Protein denotes IL-1Ra
T680 67-76 Negative_regulation denotes decreased
T679 21-31 Gene_expression denotes expression
T674 48-61 Protein denotes Bcl-2, C-IAP1
R366 T674 T679 themeOf "Bcl-2, C-IAP1",expression
R369 T679 T680 themeOf expression,decreased
R370 T681 T683 themeOf IL-1Ra,elevated