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PMC:3333881 / 6295-6560 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4495 0-3 DT denotes The
T4496 4-12 NN denotes plasmids
T4497 13-29 NN denotes pRc/CMV-3xHA-p65
T4498 29-30 -COMMA- denotes ,
T4499 31-49 NN denotes pRc/CMV-3xHA-p65ΔC
T4500 49-50 -LRB- denotes (
T4501 50-55 CD denotes 1–318
T4502 55-56 -RRB- denotes )
T4503 56-57 -COMMA- denotes ,
T4504 58-76 NN denotes pRc/CMV-3xHA-p65ΔN
T4505 76-77 -LRB- denotes (
T4506 77-84 CD denotes 122–551
T4507 84-85 -RRB- denotes )
T4508 85-86 -COMMA- denotes ,
T4509 87-102 NN denotes p3xFLAG-CMV-Tat
T4510 103-104 NN denotes T
T4511 104-105 -COMMA- denotes ,
T4512 105-106 NN denotes N
T4513 106-107 -LRB- denotes (
T4514 107-112 CD denotes 23,24
T4515 112-113 -RRB- denotes )
T4516 113-114 NN denotes A
T4517 114-115 -COMMA- denotes ,
T4518 116-131 NN denotes p3xFLAG-CMV-Tat
T4519 132-133 NN denotes K
T4520 133-134 -LRB- denotes (
T4521 134-139 CD denotes 50,51
T4522 139-140 -RRB- denotes )
T4523 140-141 NN denotes A
T4524 141-142 -COMMA- denotes ,
T4525 143-154 NN denotes pGEX-2T-Tat
T4526 155-156 NN denotes T
T4527 156-157 -COMMA- denotes ,
T4528 157-158 NN denotes N
T4529 158-159 -LRB- denotes (
T4530 159-164 CD denotes 23,24
T4531 164-165 -RRB- denotes )
T4532 165-166 NN denotes A
T4533 166-167 -COMMA- denotes ,
T4534 168-179 NN denotes pGEX-2T-Tat
T4535 180-181 NN denotes K
T4536 181-182 -LRB- denotes (
T4537 182-187 CD denotes 50,51
T4538 187-188 -RRB- denotes )
T4539 188-189 NN denotes A
T4540 190-193 CC denotes and
T4541 194-214 NN denotes pNL4-3.FLAG-Tat.R-E-
T4542 215-219 VB denotes were
T4543 220-229 VB denotes generated
T4544 230-232 IN denotes as
T4545 233-242 VB denotes described
T4546 243-245 IN denotes in
T4547 246-259 NNP denotes Supplementary
T4548 260-264 NNP denotes Data
R4096 T4497 T4498 arg1Of pRc/CMV-3xHA-p65,","
R4097 T4498 T4496 arg1Of ",",plasmids
R4098 T4498 T4503 arg1Of ",",","
R4099 T4499 T4498 arg2Of pRc/CMV-3xHA-p65ΔC,","
R4100 T4499 T4500 arg1Of pRc/CMV-3xHA-p65ΔC,(
R4101 T4501 T4500 arg2Of 1–318,(
R4102 T4502 T4500 arg3Of ),(
R4103 T4503 T4508 arg1Of ",",","
R4104 T4504 T4503 arg2Of pRc/CMV-3xHA-p65ΔN,","
R4105 T4504 T4505 arg1Of pRc/CMV-3xHA-p65ΔN,(
R4106 T4506 T4505 arg2Of 122–551,(
R4107 T4507 T4505 arg3Of ),(
R4108 T4508 T4511 arg1Of ",",","
R4109 T4510 T4508 arg2Of T,","
R4110 T4510 T4509 arg1Of T,p3xFLAG-CMV-Tat
R4111 T4511 T4517 arg1Of ",",","
R4112 T4514 T4513 arg2Of "23,24",(
R4113 T4515 T4513 arg3Of ),(
R4114 T4516 T4511 arg2Of A,","
R4115 T4516 T4512 arg1Of A,N
R4116 T4516 T4513 arg1Of A,(
R4117 T4517 T4495 arg1Of ",",The
R4118 T4517 T4542 arg1Of ",",were
R4119 T4517 T4543 arg2Of ",",generated
R4120 T4521 T4520 arg2Of "50,51",(
R4121 T4522 T4520 arg3Of ),(
R4122 T4523 T4518 arg1Of A,p3xFLAG-CMV-Tat
R4123 T4523 T4519 arg1Of A,K
R4124 T4523 T4520 arg1Of A,(
R4125 T4523 T4524 arg1Of A,","
R4126 T4524 T4527 arg1Of ",",","
R4127 T4526 T4524 arg2Of T,","
R4128 T4526 T4525 arg1Of T,pGEX-2T-Tat
R4129 T4527 T4533 arg1Of ",",","
R4130 T4530 T4529 arg2Of "23,24",(
R4131 T4531 T4529 arg3Of ),(
R4132 T4532 T4527 arg2Of A,","
R4133 T4532 T4528 arg1Of A,N
R4134 T4532 T4529 arg1Of A,(
R4135 T4533 T4540 arg1Of ",",and
R4136 T4537 T4536 arg2Of "50,51",(
R4137 T4538 T4536 arg3Of ),(
R4138 T4539 T4533 arg2Of A,","
R4139 T4539 T4534 arg1Of A,pGEX-2T-Tat
R4140 T4539 T4535 arg1Of A,K
R4141 T4539 T4536 arg1Of A,(
R4142 T4540 T4517 arg2Of and,","
R4143 T4541 T4540 arg2Of pNL4-3.FLAG-Tat.R-E-,and
R4144 T4543 T4542 arg2Of generated,were
R4145 T4543 T4544 arg1Of generated,as
R4146 T4545 T4544 arg2Of described,as
R4147 T4545 T4546 arg1Of described,in
R4148 T4548 T4546 arg2Of Data,in
R4149 T4548 T4547 arg1Of Data,Supplementary

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4683 0-3 DT denotes The
T4684 4-12 NNS denotes plasmids
T4685 13-20 NNP denotes pRc/CMV
T4686 20-22 CD denotes -3
T4687 22-29 NNP denotes xHA-p65
T4688 29-30 , denotes ,
T4689 31-38 NNP denotes pRc/CMV
T4690 38-40 CD denotes -3
T4691 40-49 NN denotes xHA-p65ΔC
T4692 49-50 -LRB- denotes (
T4693 50-51 CD denotes 1
T4694 52-55 CD denotes 318
T4695 55-56 -RRB- denotes )
T4696 56-57 , denotes ,
T4697 58-65 NNP denotes pRc/CMV
T4698 65-67 CD denotes -3
T4699 67-76 NNP denotes xHA-p65ΔN
T4700 76-77 -LRB- denotes (
T4701 77-80 CD denotes 122
T4702 81-84 CD denotes 551
T4703 84-85 -RRB- denotes )
T4704 85-86 , denotes ,
T4705 87-102 JJ denotes p3xFLAG-CMV-Tat
T4706 103-104 NNP denotes T
T4707 104-105 , denotes ,
T4708 105-106 NNP denotes N
T4709 106-107 -LRB- denotes (
T4710 107-112 CD denotes 23,24
T4711 112-113 -RRB- denotes )
T4712 113-114 DT denotes A
T4713 114-115 , denotes ,
T4714 116-131 JJ denotes p3xFLAG-CMV-Tat
T4715 132-133 NNP denotes K
T4716 133-134 -LRB- denotes (
T4717 134-139 CD denotes 50,51
T4718 139-140 -RRB- denotes )
T4719 140-141 DT denotes A
T4720 141-142 , denotes ,
T4721 143-154 JJ denotes pGEX-2T-Tat
T4722 155-156 NNP denotes T
T4723 156-157 , denotes ,
T4724 157-158 NNP denotes N
T4725 158-159 -LRB- denotes (
T4726 159-164 CD denotes 23,24
T4727 164-165 -RRB- denotes )
T4728 165-166 DT denotes A
T4729 166-167 , denotes ,
T4730 168-179 JJ denotes pGEX-2T-Tat
T4731 180-181 NNP denotes K
T4732 181-182 -LRB- denotes (
T4733 182-187 CD denotes 50,51
T4734 187-188 -RRB- denotes )
T4735 188-189 DT denotes A
T4736 190-193 CC denotes and
T4737 194-200 JJ denotes pNL4-3
T4738 200-201 . denotes .
T4739 201-209 NN denotes FLAG-Tat
T4740 209-210 . denotes .
T4741 210-213 SYM denotes R-E
T4742 213-214 : denotes -
T4743 215-219 VBD denotes were
T4744 220-229 VBN denotes generated
T4745 230-232 IN denotes as
T4746 233-242 VBN denotes described
T4747 243-245 IN denotes in
T4748 246-259 NNP denotes Supplementary
T4749 260-264 NNP denotes Data
T4750 264-265 . denotes .
R4237 T4683 T4687 det The,xHA-p65
R4238 T4684 T4685 compound plasmids,pRc/CMV
R4239 T4685 T4687 nmod pRc/CMV,xHA-p65
R4240 T4686 T4687 nummod -3,xHA-p65
R4241 T4687 T4687 ROOT xHA-p65,xHA-p65
R4242 T4688 T4687 punct ",",xHA-p65
R4243 T4689 T4687 appos pRc/CMV,xHA-p65
R4244 T4690 T4691 nummod -3,xHA-p65ΔC
R4245 T4691 T4687 appos xHA-p65ΔC,xHA-p65
R4246 T4692 T4693 punct (,1
R4247 T4693 T4699 nummod 1,xHA-p65ΔN
R4248 T4694 T4693 appos 318,1
R4249 T4695 T4693 punct ),1
R4250 T4696 T4693 punct ",",1
R4251 T4697 T4699 nmod pRc/CMV,xHA-p65ΔN
R4252 T4698 T4699 nummod -3,xHA-p65ΔN
R4253 T4699 T4691 appos xHA-p65ΔN,xHA-p65ΔC
R4254 T4700 T4699 punct (,xHA-p65ΔN
R4255 T4701 T4699 parataxis 122,xHA-p65ΔN
R4256 T4702 T4701 prep 551,122
R4257 T4703 T4701 punct ),122
R4258 T4704 T4706 punct ",",T
R4259 T4705 T4706 compound p3xFLAG-CMV-Tat,T
R4260 T4706 T4699 conj T,xHA-p65ΔN
R4261 T4707 T4706 punct ",",T
R4262 T4708 T4706 npadvmod N,T
R4263 T4709 T4710 punct (,"23,24"
R4264 T4710 T4708 parataxis "23,24",N
R4265 T4711 T4710 punct ),"23,24"
R4266 T4712 T4715 det A,K
R4267 T4713 T4715 punct ",",K
R4268 T4714 T4715 compound p3xFLAG-CMV-Tat,K
R4269 T4715 T4715 ROOT K,K
R4270 T4716 T4715 punct (,K
R4271 T4717 T4715 appos "50,51",K
R4272 T4718 T4715 punct ),K
R4273 T4719 T4722 det A,T
R4274 T4720 T4722 punct ",",T
R4275 T4721 T4722 compound pGEX-2T-Tat,T
R4276 T4722 T4722 ROOT T,T
R4277 T4723 T4722 punct ",",T
R4278 T4724 T4722 conj N,T
R4279 T4725 T4724 punct (,N
R4280 T4726 T4724 appos "23,24",N
R4281 T4727 T4724 punct ),N
R4282 T4728 T4728 ROOT A,A
R4283 T4729 T4735 punct ",",A
R4284 T4730 T4731 amod pGEX-2T-Tat,K
R4285 T4731 T4735 nmod K,A
R4286 T4732 T4731 punct (,K
R4287 T4733 T4731 appos "50,51",K
R4288 T4734 T4735 punct ),A
R4289 T4735 T4728 det A,A
R4290 T4736 T4735 cc and,A
R4291 T4737 T4735 conj pNL4-3,A
R4292 T4738 T4737 punct .,pNL4-3
R4293 T4739 T4739 ROOT FLAG-Tat,FLAG-Tat
R4294 T4740 T4739 punct .,FLAG-Tat
R4295 T4741 T4744 nsubjpass R-E,generated
R4296 T4742 T4744 punct -,generated
R4297 T4743 T4744 auxpass were,generated
R4298 T4744 T4744 ROOT generated,generated
R4299 T4745 T4746 mark as,described
R4300 T4746 T4744 advcl described,generated
R4301 T4747 T4746 prep in,described
R4302 T4748 T4749 compound Supplementary,Data
R4303 T4749 T4747 pobj Data,in
R4304 T4750 T4744 punct .,generated

sentences

Id Subject Object Predicate Lexical cue
T4412 0-265 Sentence denotes The plasmids pRc/CMV-3xHA-p65, pRc/CMV-3xHA-p65ΔC(1–318), pRc/CMV-3xHA-p65ΔN(122–551), p3xFLAG-CMV-Tat T,N(23,24)A, p3xFLAG-CMV-Tat K(50,51)A, pGEX-2T-Tat T,N(23,24)A, pGEX-2T-Tat K(50,51)A and pNL4-3.FLAG-Tat.R-E- were generated as described in Supplementary Data.
T40 0-265 Sentence denotes The plasmids pRc/CMV-3xHA-p65, pRc/CMV-3xHA-p65ΔC(1–318), pRc/CMV-3xHA-p65ΔN(122–551), p3xFLAG-CMV-Tat T,N(23,24)A, p3xFLAG-CMV-Tat K(50,51)A, pGEX-2T-Tat T,N(23,24)A, pGEX-2T-Tat K(50,51)A and pNL4-3.FLAG-Tat.R-E- were generated as described in Supplementary Data.

events-check-again

Id Subject Object Predicate Lexical cue
T4849 21-29 Protein denotes 3xHA-p65
T4850 39-49 Protein denotes 3xHA-p65ΔC
T4851 66-76 Protein denotes 3xHA-p65ΔN
T4852 99-114 Protein denotes Tat T,N(23,24)A
T4853 128-141 Protein denotes Tat K(50,51)A
T4854 151-166 Protein denotes Tat T,N(23,24)A
T4855 176-189 Protein denotes Tat K(50,51)A
T4856 206-209 Protein denotes Tat

test2

Id Subject Object Predicate Lexical cue
T4384 21-29 Protein denotes 3xHA-p65
T4385 39-49 Protein denotes 3xHA-p65ΔC
T4386 66-76 Protein denotes 3xHA-p65ΔN
T4387 99-114 Protein denotes Tat T,N(23,24)A
T4388 128-141 Protein denotes Tat K(50,51)A
T4389 151-166 Protein denotes Tat T,N(23,24)A
T4390 176-189 Protein denotes Tat K(50,51)A
T4391 206-209 Protein denotes Tat

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T4401 21-29 Protein denotes 3xHA-p65
T4402 39-49 Protein denotes 3xHA-p65ΔC
T4403 66-76 Protein denotes 3xHA-p65ΔN
T4404 99-114 Protein denotes Tat T,N(23,24)A
T4405 128-141 Protein denotes Tat K(50,51)A
T4406 151-166 Protein denotes Tat T,N(23,24)A
T4407 176-189 Protein denotes Tat K(50,51)A
T4408 206-209 Protein denotes Tat

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4574 26-29 P21579 denotes p65
T4575 26-29 Q04206 denotes p65
T4576 99-102 Q8UMQ1 denotes Tat
T4577 99-102 P04610 denotes Tat
T4578 99-102 P04608 denotes Tat
T4579 99-102 P04605 denotes Tat
T4580 128-131 Q8UMQ1 denotes Tat
T4581 128-131 P04610 denotes Tat
T4582 128-131 P04608 denotes Tat
T4583 128-131 P04605 denotes Tat
T4584 151-154 Q8UMQ1 denotes Tat
T4585 151-154 P04610 denotes Tat
T4586 151-154 P04608 denotes Tat
T4587 151-154 P04605 denotes Tat
T4588 176-179 Q8UMQ1 denotes Tat
T4589 176-179 P04610 denotes Tat
T4590 176-179 P04608 denotes Tat
T4591 176-179 P04605 denotes Tat
T4592 206-209 Q8UMQ1 denotes Tat
T4593 206-209 P04610 denotes Tat
T4594 206-209 P04608 denotes Tat
T4595 206-209 P04605 denotes Tat