PMC:3333881 / 43413-43621 JSONTXT

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    pmc-enju-pas

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T21918","span":{"begin":0,"end":1},"obj":"DT"},{"id":"T21919","span":{"begin":2,"end":9},"obj":"JJ"},{"id":"T21920","span":{"begin":10,"end":19},"obj":"NN"},{"id":"T21921","span":{"begin":20,"end":22},"obj":"IN"},{"id":"T21922","span":{"begin":23,"end":27},"obj":"NN"},{"id":"T21923","span":{"begin":28,"end":38},"obj":"NN"},{"id":"T21924","span":{"begin":39,"end":44},"obj":"MD"},{"id":"T21925","span":{"begin":45,"end":50},"obj":"VB"},{"id":"T21926","span":{"begin":51,"end":53},"obj":"TO"},{"id":"T21927","span":{"begin":54,"end":57},"obj":"DT"},{"id":"T21928","span":{"begin":58,"end":73},"obj":"JJ"},{"id":"T21929","span":{"begin":74,"end":79},"obj":"NNS"},{"id":"T21930","span":{"begin":80,"end":88},"obj":"VBN"},{"id":"T21931","span":{"begin":89,"end":91},"obj":"IN"},{"id":"T21932","span":{"begin":92,"end":96},"obj":"DT"},{"id":"T21933","span":{"begin":97,"end":102},"obj":"NN"},{"id":"T21934","span":{"begin":102,"end":103},"obj":","},{"id":"T21935","span":{"begin":104,"end":109},"obj":"WRB"},{"id":"T21936","span":{"begin":110,"end":113},"obj":"NNP"},{"id":"T21937","span":{"begin":114,"end":119},"obj":"MD"},{"id":"T21938","span":{"begin":120,"end":128},"obj":"VB"},{"id":"T21939","span":{"begin":129,"end":132},"obj":"DT"},{"id":"T21940","span":{"begin":133,"end":137},"obj":"NN"},{"id":"T21941","span":{"begin":138,"end":148},"obj":"NN"},{"id":"T21942","span":{"begin":149,"end":151},"obj":"IN"},{"id":"T21943","span":{"begin":152,"end":160},"obj":"VBG"},{"id":"T21944","span":{"begin":161,"end":166},"obj":"NNP"},{"id":"T21945","span":{"begin":167,"end":170},"obj":"CC"},{"id":"T21946","span":{"begin":171,"end":180},"obj":"VBG"},{"id":"T21947","span":{"begin":181,"end":184},"obj":"DT"},{"id":"T21948","span":{"begin":185,"end":188},"obj":"CD"},{"id":"T21949","span":{"begin":189,"end":196},"obj":"VBG"},{"id":"T21950","span":{"begin":197,"end":198},"obj":"-LRB-"},{"id":"T21951","span":{"begin":198,"end":204},"obj":"NN"},{"id":"T21952","span":{"begin":205,"end":206},"obj":"CD"},{"id":"T21953","span":{"begin":206,"end":207},"obj":"-RRB-"},{"id":"T21954","span":{"begin":207,"end":208},"obj":"."}],"relations":[{"id":"R17609","pred":"det","subj":"T21918","obj":"T21920"},{"id":"R17610","pred":"amod","subj":"T21919","obj":"T21920"},{"id":"R17611","pred":"nsubj","subj":"T21920","obj":"T21925"},{"id":"R17612","pred":"prep","subj":"T21921","obj":"T21920"},{"id":"R17613","pred":"compound","subj":"T21922","obj":"T21923"},{"id":"R17614","pred":"pobj","subj":"T21923","obj":"T21921"},{"id":"R17615","pred":"aux","subj":"T21924","obj":"T21925"},{"id":"R17616","pred":"ROOT","subj":"T21925","obj":"T21925"},{"id":"R17617","pred":"prep","subj":"T21926","obj":"T21925"},{"id":"R17618","pred":"det","subj":"T21927","obj":"T21929"},{"id":"R17619","pred":"amod","subj":"T21928","obj":"T21929"},{"id":"R17620","pred":"pobj","subj":"T21929","obj":"T21926"},{"id":"R17621","pred":"acl","subj":"T21930","obj":"T21929"},{"id":"R17622","pred":"prep","subj":"T21931","obj":"T21930"},{"id":"R17623","pred":"det","subj":"T21932","obj":"T21933"},{"id":"R17624","pred":"pobj","subj":"T21933","obj":"T21931"},{"id":"R17625","pred":"punct","subj":"T21934","obj":"T21933"},{"id":"R17626","pred":"advmod","subj":"T21935","obj":"T21938"},{"id":"R17627","pred":"nsubj","subj":"T21936","obj":"T21938"},{"id":"R17628","pred":"aux","subj":"T21937","obj":"T21938"},{"id":"R17629","pred":"advcl","subj":"T21938","obj":"T21925"},{"id":"R17630","pred":"det","subj":"T21939","obj":"T21941"},{"id":"R17631","pred":"compound","subj":"T21940","obj":"T21941"},{"id":"R17632","pred":"dobj","subj":"T21941","obj":"T21938"},{"id":"R17633","pred":"prep","subj":"T21942","obj":"T21938"},{"id":"R17634","pred":"pcomp","subj":"T21943","obj":"T21942"},{"id":"R17635","pred":"dobj","subj":"T21944","obj":"T21943"},{"id":"R17636","pred":"cc","subj":"T21945","obj":"T21943"},{"id":"R17637","pred":"conj","subj":"T21946","obj":"T21943"},{"id":"R17638","pred":"det","subj":"T21947","obj":"T21949"},{"id":"R17639","pred":"nummod","subj":"T21948","obj":"T21949"},{"id":"R17640","pred":"dobj","subj":"T21949","obj":"T21946"},{"id":"R17641","pred":"punct","subj":"T21950","obj":"T21951"},{"id":"R17642","pred":"appos","subj":"T21951","obj":"T21949"},{"id":"R17643","pred":"nummod","subj":"T21952","obj":"T21951"},{"id":"R17644","pred":"punct","subj":"T21953","obj":"T21951"},{"id":"R17645","pred":"punct","subj":"T21954","obj":"T21925"}],"text":"A similar mechanism of gene regulation could apply to the NF-κB-dependent genes analysed in this study, where Tat could activate the gene expression by removing IκB-α and promoting the p65 loading (Figure 7)."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T22349","span":{"begin":28,"end":38},"obj":"http://purl.obolibrary.org/obo/GO_0065007"},{"id":"T22351","span":{"begin":133,"end":148},"obj":"http://purl.obolibrary.org/obo/GO_0010467"}],"text":"A similar mechanism of gene regulation could apply to the NF-κB-dependent genes analysed in this study, where Tat could activate the gene expression by removing IκB-α and promoting the p65 loading (Figure 7)."}

    sentences

    {"project":"sentences","denotations":[{"id":"T19900","span":{"begin":0,"end":208},"obj":"Sentence"},{"id":"T255","span":{"begin":0,"end":208},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"A similar mechanism of gene regulation could apply to the NF-κB-dependent genes analysed in this study, where Tat could activate the gene expression by removing IκB-α and promoting the p65 loading (Figure 7)."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T23536","span":{"begin":110,"end":113},"obj":"Protein"},{"id":"T23537","span":{"begin":149,"end":151},"obj":"Positive_regulation"},{"id":"T23538","span":{"begin":149,"end":151},"obj":"Positive_regulation"},{"id":"T23539","span":{"begin":152,"end":160},"obj":"Binding"},{"id":"T23540","span":{"begin":161,"end":166},"obj":"Protein"},{"id":"T23541","span":{"begin":171,"end":180},"obj":"Positive_regulation"},{"id":"T23542","span":{"begin":185,"end":188},"obj":"Protein"},{"id":"T23543","span":{"begin":189,"end":196},"obj":"Binding"}],"relations":[{"id":"R18851","pred":"causeOf","subj":"T23536","obj":"T23538"},{"id":"R18852","pred":"causeOf","subj":"T23536","obj":"T23537"},{"id":"R18853","pred":"themeOf","subj":"T23539","obj":"T23538"},{"id":"R18854","pred":"themeOf","subj":"T23540","obj":"T23539"},{"id":"R18856","pred":"themeOf","subj":"T23541","obj":"T23537"},{"id":"R18857","pred":"themeOf","subj":"T23542","obj":"T23543"},{"id":"R18858","pred":"themeOf","subj":"T23543","obj":"T23541"}],"attributes":[{"id":"M453","pred":"Negation","subj":"T23539","obj":"true"}],"text":"A similar mechanism of gene regulation could apply to the NF-κB-dependent genes analysed in this study, where Tat could activate the gene expression by removing IκB-α and promoting the p65 loading (Figure 7)."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T23798","span":{"begin":58,"end":63},"obj":"Protein"},{"id":"T23799","span":{"begin":110,"end":113},"obj":"Protein"},{"id":"T23800","span":{"begin":161,"end":166},"obj":"Protein"},{"id":"T23801","span":{"begin":152,"end":160},"obj":"Negative_regulation"}],"relations":[{"id":"R19050","pred":"causeOf","subj":"T23799","obj":"T23801"},{"id":"R19051","pred":"themeOf","subj":"T23800","obj":"T23801"}],"text":"A similar mechanism of gene regulation could apply to the NF-κB-dependent genes analysed in this study, where Tat could activate the gene expression by removing IκB-α and promoting the p65 loading (Figure 7)."}

    test2

    {"project":"test2","denotations":[{"id":"T19607","span":{"begin":110,"end":113},"obj":"Protein"},{"id":"T19608","span":{"begin":152,"end":160},"obj":"Negative_regulation"},{"id":"T19609","span":{"begin":161,"end":166},"obj":"Protein"},{"id":"T19610","span":{"begin":171,"end":180},"obj":"Positive_regulation"},{"id":"T19611","span":{"begin":185,"end":188},"obj":"Protein"},{"id":"T19612","span":{"begin":189,"end":196},"obj":"Binding"}],"relations":[{"id":"R15659","pred":"causeOf","subj":"T19607","obj":"T19610"},{"id":"R15660","pred":"causeOf","subj":"T19607","obj":"T19608"},{"id":"R15661","pred":"themeOf","subj":"T19609","obj":"T19608"},{"id":"R15662","pred":"themeOf","subj":"T19611","obj":"T19612"},{"id":"R15663","pred":"themeOf","subj":"T19612","obj":"T19610"}],"text":"A similar mechanism of gene regulation could apply to the NF-κB-dependent genes analysed in this study, where Tat could activate the gene expression by removing IκB-α and promoting the p65 loading (Figure 7)."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T19810","span":{"begin":110,"end":113},"obj":"Protein"},{"id":"T19811","span":{"begin":149,"end":151},"obj":"Positive_regulation"},{"id":"T19812","span":{"begin":149,"end":151},"obj":"Positive_regulation"},{"id":"T19813","span":{"begin":152,"end":160},"obj":"Binding"},{"id":"T19814","span":{"begin":161,"end":166},"obj":"Protein"},{"id":"T19815","span":{"begin":171,"end":180},"obj":"Positive_regulation"},{"id":"T19816","span":{"begin":185,"end":188},"obj":"Protein"},{"id":"T19817","span":{"begin":189,"end":196},"obj":"Binding"}],"relations":[{"id":"R15807","pred":"causeOf","subj":"T19810","obj":"T19812"},{"id":"R15808","pred":"causeOf","subj":"T19810","obj":"T19811"},{"id":"R15809","pred":"themeOf","subj":"T19813","obj":"T19812"},{"id":"R15810","pred":"themeOf","subj":"T19814","obj":"T19813"},{"id":"R15811","pred":"themeOf","subj":"T19815","obj":"T19811"},{"id":"R15812","pred":"themeOf","subj":"T19816","obj":"T19817"},{"id":"R15813","pred":"themeOf","subj":"T19817","obj":"T19815"}],"attributes":[{"id":"M403","pred":"Negation","subj":"T19813","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"A similar mechanism of gene regulation could apply to the NF-κB-dependent genes analysed in this study, where Tat could activate the gene expression by removing IκB-α and promoting the p65 loading (Figure 7)."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T21126","span":{"begin":110,"end":113},"obj":"P04605"},{"id":"T21127","span":{"begin":110,"end":113},"obj":"P04608"},{"id":"T21128","span":{"begin":110,"end":113},"obj":"P04610"},{"id":"T21129","span":{"begin":110,"end":113},"obj":"Q8UMQ1"},{"id":"T21130","span":{"begin":185,"end":188},"obj":"P21579"},{"id":"T21131","span":{"begin":185,"end":188},"obj":"Q04206"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"A similar mechanism of gene regulation could apply to the NF-κB-dependent genes analysed in this study, where Tat could activate the gene expression by removing IκB-α and promoting the p65 loading (Figure 7)."}