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PMC:3333881 / 41628-41809 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22187158-17942396-77584466 125-127 17942396 denotes 50
22187158-21664225-77584467 128-130 21664225 denotes 51

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20257 0-11 RB denotes Differently
T20258 11-12 -COMMA- denotes ,
T20259 13-16 DT denotes the
T20260 17-20 NN denotes Tat
T20261 21-34 JJ denotes arginine-rich
T20262 35-43 NN denotes sequence
T20263 44-45 -LRB- denotes (
T20264 45-63 NN denotes R49,52,53,55,56,57
T20265 63-64 -RRB- denotes )
T20266 65-68 VB denotes was
T20267 69-77 VB denotes required
T20268 78-81 IN denotes for
T20269 82-85 DT denotes the
T20270 86-93 NN denotes binding
T20271 94-96 TO denotes to
T20272 97-100 DT denotes the
T20273 101-106 JJ denotes sixth
T20274 107-114 NN denotes ankyrin
T20275 115-117 IN denotes of
T20276 118-123 NN denotes IκB-α
T20277 124-125 -LRB- denotes (
T20278 125-130 CD denotes 50,51
T20279 130-131 -RRB- denotes )
T20280 131-132 -COMMA- denotes ,
T20281 133-136 CC denotes and
T20282 137-140 IN denotes for
T20283 141-150 VB denotes releasing
T20284 151-154 NN denotes p65
T20285 155-159 IN denotes from
T20286 160-163 DT denotes the
T20287 164-169 JJ denotes IκB-α
T20288 170-180 NN denotes inhibition
R16211 T20262 T20259 arg1Of sequence,the
R16212 T20262 T20260 arg1Of sequence,Tat
R16213 T20262 T20261 arg1Of sequence,arginine-rich
R16214 T20262 T20263 arg1Of sequence,(
R16215 T20262 T20266 arg1Of sequence,was
R16216 T20262 T20267 arg2Of sequence,required
R16217 T20264 T20263 arg2Of "R49,52,53,55,56,57",(
R16218 T20265 T20263 arg3Of ),(
R16219 T20267 T20257 arg1Of required,Differently
R16220 T20267 T20258 arg1Of required,","
R16221 T20267 T20266 arg2Of required,was
R16222 T20267 T20268 arg1Of required,for
R16223 T20270 T20268 arg2Of binding,for
R16224 T20270 T20269 arg1Of binding,the
R16225 T20270 T20271 arg1Of binding,to
R16226 T20270 T20282 arg1Of binding,for
R16227 T20271 T20281 arg1Of to,and
R16228 T20274 T20271 arg2Of ankyrin,to
R16229 T20274 T20272 arg1Of ankyrin,the
R16230 T20274 T20273 arg1Of ankyrin,sixth
R16231 T20274 T20275 arg1Of ankyrin,of
R16232 T20276 T20275 arg2Of IκB-α,of
R16233 T20276 T20277 arg1Of IκB-α,(
R16234 T20278 T20277 arg2Of "50,51",(
R16235 T20279 T20277 arg3Of ),(
R16236 T20281 T20280 arg1Of and,","
R16237 T20282 T20281 arg2Of for,and
R16238 T20283 T20282 arg2Of releasing,for
R16239 T20283 T20285 arg1Of releasing,from
R16240 T20284 T20283 arg2Of p65,releasing
R16241 T20288 T20285 arg2Of inhibition,from
R16242 T20288 T20286 arg1Of inhibition,the
R16243 T20288 T20287 arg1Of inhibition,IκB-α

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21601 0-11 RB denotes Differently
T21602 11-12 , denotes ,
T21603 13-16 DT denotes the
T21604 17-20 NNP denotes Tat
T21605 21-34 JJ denotes arginine-rich
T21606 35-43 NN denotes sequence
T21607 44-45 -LRB- denotes (
T21608 45-48 CD denotes R49
T21609 48-63 CD denotes ,52,53,55,56,57
T21610 63-64 -RRB- denotes )
T21611 65-68 VBD denotes was
T21612 69-77 VBN denotes required
T21613 78-81 IN denotes for
T21614 82-85 DT denotes the
T21615 86-93 JJ denotes binding
T21616 94-96 TO denotes to
T21617 97-100 DT denotes the
T21618 101-106 JJ denotes sixth
T21619 107-114 NN denotes ankyrin
T21620 115-117 IN denotes of
T21621 118-123 NNP denotes IκB-α
T21622 124-125 -LRB- denotes (
T21623 125-130 CD denotes 50,51
T21624 130-131 -RRB- denotes )
T21625 131-132 , denotes ,
T21626 133-136 CC denotes and
T21627 137-140 IN denotes for
T21628 141-150 VBG denotes releasing
T21629 151-154 NNS denotes p65
T21630 155-159 IN denotes from
T21631 160-163 DT denotes the
T21632 164-169 JJ denotes IκB-α
T21633 170-180 NN denotes inhibition
T21634 180-181 . denotes .
R17292 T21601 T21612 advmod Differently,required
R17293 T21602 T21612 punct ",",required
R17294 T21603 T21606 det the,sequence
R17295 T21604 T21606 nmod Tat,sequence
R17296 T21605 T21606 amod arginine-rich,sequence
R17297 T21606 T21612 nsubjpass sequence,required
R17298 T21607 T21606 punct (,sequence
R17299 T21608 T21609 nummod R49,",52,53,55,56,57"
R17300 T21609 T21606 appos ",52,53,55,56,57",sequence
R17301 T21610 T21606 punct ),sequence
R17302 T21611 T21612 auxpass was,required
R17303 T21612 T21612 ROOT required,required
R17304 T21613 T21612 prep for,required
R17305 T21614 T21615 det the,binding
R17306 T21615 T21616 nsubj binding,to
R17307 T21616 T21612 prep to,required
R17308 T21617 T21619 det the,ankyrin
R17309 T21618 T21619 amod sixth,ankyrin
R17310 T21619 T21616 pobj ankyrin,to
R17311 T21620 T21619 prep of,ankyrin
R17312 T21621 T21620 pobj IκB-α,of
R17313 T21622 T21621 punct (,IκB-α
R17314 T21623 T21621 parataxis "50,51",IκB-α
R17315 T21624 T21621 punct ),IκB-α
R17316 T21625 T21612 punct ",",required
R17317 T21626 T21612 cc and,required
R17318 T21627 T21612 conj for,required
R17319 T21628 T21627 pcomp releasing,for
R17320 T21629 T21628 dobj p65,releasing
R17321 T21630 T21628 prep from,releasing
R17322 T21631 T21633 det the,inhibition
R17323 T21632 T21633 amod IκB-α,inhibition
R17324 T21633 T21630 pobj inhibition,from
R17325 T21634 T21612 punct .,required

GO-MF

Id Subject Object Predicate Lexical cue
T22372 86-93 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T19891 0-181 Sentence denotes Differently, the Tat arginine-rich sequence (R49,52,53,55,56,57) was required for the binding to the sixth ankyrin of IκB-α (50,51), and for releasing p65 from the IκB-α inhibition.
T245 0-181 Sentence denotes Differently, the Tat arginine-rich sequence (R49,52,53,55,56,57) was required for the binding to the sixth ankyrin of IκB-α (50,51), and for releasing p65 from the IκB-α inhibition.

events-check-again

Id Subject Object Predicate Lexical cue
T23454 17-20 Protein denotes Tat
T23455 21-43 Entity denotes arginine-rich sequence
T23456 69-77 Positive_regulation denotes required
T23457 69-77 Positive_regulation denotes required
T23458 86-93 Binding denotes binding
T23459 101-114 Entity denotes sixth ankyrin
T23460 118-123 Protein denotes IκB-α
T23461 141-150 Negative_regulation denotes releasing
T23462 151-154 Protein denotes p65
T23463 164-169 Protein denotes IκB-α
T23464 170-180 Negative_regulation denotes inhibition
R18762 T23454 T23458 themeOf Tat,binding
R18763 T23454 T23461 causeOf Tat,releasing
R18764 T23455 T23456 causeOf arginine-rich sequence,required
R18765 T23455 T23454 partOf arginine-rich sequence,Tat
R18766 T23455 T23457 causeOf arginine-rich sequence,required
R18768 T23458 T23456 themeOf binding,required
R18770 T23459 T23458 themeOf sixth ankyrin,binding
R18771 T23459 T23460 partOf sixth ankyrin,IκB-α
R18772 T23461 T23457 themeOf releasing,required
R18773 T23462 T23464 themeOf p65,inhibition
R18775 T23464 T23461 themeOf inhibition,releasing

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T23700 17-20 Protein denotes Tat
T23701 107-114 Protein denotes ankyrin
T23702 118-123 Protein denotes IκB-α
T23703 164-169 Protein denotes IκB-α
T23704 86-93 Binding denotes binding
T23705 86-93 Binding denotes binding
T23706 86-93 Binding denotes binding
T23707 170-180 Negative_regulation denotes inhibition
T23708 69-77 Positive_regulation denotes required
T23709 69-77 Positive_regulation denotes required
T23710 69-77 Positive_regulation denotes required
R18976 T23701 T23704 themeOf ankyrin,binding
R18977 T23701 T23706 themeOf ankyrin,binding
R18978 T23702 T23705 themeOf IκB-α,binding
R18979 T23702 T23706 themeOf IκB-α,binding
R18981 T23703 T23707 themeOf IκB-α,inhibition
R18982 T23704 T23708 themeOf binding,required
R18983 T23705 T23709 themeOf binding,required
R18985 T23706 T23710 themeOf binding,required

test2

Id Subject Object Predicate Lexical cue Negation
T19526 17-20 Protein denotes Tat
T19527 21-43 Entity denotes arginine-rich sequence true
T19528 69-77 Positive_regulation denotes required
T19529 86-93 Binding denotes binding
T19530 101-114 Entity denotes sixth ankyrin
T19531 118-123 Protein denotes IκB-α
T19532 141-150 Negative_regulation denotes releasing
T19533 151-154 Protein denotes p65
T19534 164-169 Protein denotes IκB-α
T19535 170-180 Negative_regulation denotes inhibition
R15596 T19526 T19532 causeOf Tat,releasing
R15597 T19526 T19529 themeOf Tat,binding
R15598 T19527 T19532 causeOf arginine-rich sequence,releasing
R15599 T19527 T19528 causeOf arginine-rich sequence,required
R15600 T19527 T19526 partOf arginine-rich sequence,Tat
R15601 T19529 T19528 themeOf binding,required
R15602 T19529 T19532 causeOf binding,releasing
R15603 T19530 T19531 partOf sixth ankyrin,IκB-α
R15604 T19530 T19529 themeOf sixth ankyrin,binding
R15605 T19533 T19535 themeOf p65,inhibition
R15606 T19534 T19535 themeOf IκB-α,inhibition
R15607 T19535 T19532 themeOf inhibition,releasing

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T19728 17-20 Protein denotes Tat
T19729 21-43 Entity denotes arginine-rich sequence
T19730 69-77 Positive_regulation denotes required
T19731 69-77 Positive_regulation denotes required
T19732 86-93 Binding denotes binding
T19733 101-114 Entity denotes sixth ankyrin
T19734 118-123 Protein denotes IκB-α
T19735 141-150 Negative_regulation denotes releasing
T19736 151-154 Protein denotes p65
T19737 164-169 Protein denotes IκB-α
T19738 170-180 Negative_regulation denotes inhibition
R15742 T19728 T19732 themeOf Tat,binding
R15743 T19728 T19735 causeOf Tat,releasing
R15744 T19729 T19730 causeOf arginine-rich sequence,required
R15745 T19729 T19728 partOf arginine-rich sequence,Tat
R15746 T19729 T19731 causeOf arginine-rich sequence,required
R15747 T19732 T19730 themeOf binding,required
R15748 T19733 T19732 themeOf sixth ankyrin,binding
R15749 T19733 T19734 partOf sixth ankyrin,IκB-α
R15750 T19735 T19731 themeOf releasing,required
R15751 T19736 T19738 themeOf p65,inhibition
R15752 T19738 T19735 themeOf inhibition,releasing

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T21049 17-20 Q8UMQ1 denotes Tat
T21050 17-20 P04608 denotes Tat
T21051 17-20 P04610 denotes Tat
T21052 17-20 P04605 denotes Tat
T21053 151-154 P21579 denotes p65
T21054 151-154 Q04206 denotes p65