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PMC:3333881 / 3564-4239 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22187158-11160730-77584413 99-101 11160730 denotes 28
22187158-18806803-77584414 102-104 18806803 denotes 29
22187158-11959143-77584415 338-340 11959143 denotes 30
22187158-19287489-77584416 360-362 19287489 denotes 31
22187158-2478293-77584417 662-664 2478293 denotes 32

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1830 1-9 NN denotes mangabey
T1831 9-10 -COMMA- denotes ,
T1832 11-15 VB denotes lack
T1833 16-24 JJ denotes aberrant
T1834 25-31 JJ denotes immune
T1835 32-42 NN denotes activation
T1836 43-46 CC denotes and
T1837 47-49 VB denotes do
T1838 50-53 RB denotes not
T1839 54-61 VB denotes develop
T1840 62-66 NN denotes AIDS
T1841 67-74 IN denotes despite
T1842 75-79 JJ denotes high
T1843 80-85 NN denotes virus
T1844 86-97 NN denotes replication
T1845 98-99 -LRB- denotes (
T1846 99-104 CD denotes 28,29
T1847 104-105 -RRB- denotes )
T1848 107-111 RB denotes Thus
T1849 111-112 -COMMA- denotes ,
T1850 113-126 VB denotes understanding
T1851 127-130 DT denotes the
T1852 131-141 NN denotes mechanisms
T1853 142-144 IN denotes of
T1854 145-150 NN denotes NF-κB
T1855 151-163 NN denotes deregulation
T1856 164-166 IN denotes by
T1857 167-172 NN denotes HIV-1
T1858 173-176 MD denotes may
T1859 177-184 VB denotes provide
T1860 185-192 JJ denotes further
T1861 193-201 NN denotes insights
T1862 202-206 IN denotes into
T1863 207-211 NN denotes AIDS
T1864 212-224 NN denotes pathogenesis
T1865 226-228 IN denotes In
T1866 229-234 NN denotes HIV-1
T1867 235-240 NN denotes entry
T1868 240-241 -COMMA- denotes ,
T1869 242-245 DT denotes the
T1870 246-253 NN denotes binding
T1871 254-256 IN denotes of
T1872 257-260 DT denotes the
T1873 261-266 NN denotes gp120
T1874 267-272 JJ denotes viral
T1875 273-281 NN denotes envelope
T1876 282-284 TO denotes to
T1877 285-288 NN denotes CD4
T1878 289-296 VB denotes induces
T1879 297-300 DT denotes the
T1880 301-306 NN denotes NF-κB
T1881 307-315 NN denotes activity
T1882 316-318 IN denotes by
T1883 319-329 NN denotes activation
T1884 330-332 IN denotes of
T1885 333-336 NN denotes IKK
T1886 337-338 -LRB- denotes (
T1887 338-340 CD denotes 30
T1888 340-341 -RRB- denotes )
T1889 342-345 CC denotes and
T1890 346-356 NN denotes procaspase
T1891 357-358 CD denotes 8
T1892 359-360 -LRB- denotes (
T1893 360-362 CD denotes 31
T1894 362-363 -RRB- denotes )
T1895 365-374 VB denotes Following
T1896 375-380 JJ denotes viral
T1897 381-392 NN denotes integration
T1898 392-393 -COMMA- denotes ,
T1899 394-397 DT denotes the
T1900 398-403 JJ denotes early
T1901 404-411 VB denotes encoded
T1902 412-417 NN denotes HIV-1
T1903 418-421 NN denotes Tat
T1904 422-429 NN denotes protein
T1905 430-439 VB denotes interacts
T1906 440-444 IN denotes with
T1907 445-448 DT denotes the
T1908 449-454 NN denotes HIV-1
T1909 455-458 NN denotes RNA
T1910 459-462 CC denotes and
T1911 463-467 NN denotes host
T1912 468-472 NN denotes cell
T1913 473-480 NN denotes factors
T1914 481-483 TO denotes to
T1915 484-491 VB denotes sustain
T1916 492-495 DT denotes the
T1917 496-501 JJ denotes viral
T1918 502-513 NN denotes replication
T1919 515-518 NN denotes Tat
T1920 519-524 VB denotes binds
T1921 525-527 TO denotes to
T1922 528-531 NN denotes RNA
T1923 532-541 JJ denotes stem-loop
T1924 542-552 NN denotes structures
T1925 553-562 VB denotes generated
T1926 563-565 IN denotes by
T1927 566-569 DT denotes the
T1928 570-572 NN denotes 5′
T1929 573-576 NN denotes end
T1930 577-579 IN denotes of
T1931 580-586 NN denotes target
T1932 587-598 NN denotes transcripts
T1933 598-599 -COMMA- denotes ,
T1934 600-609 VB denotes including
T1935 610-613 DT denotes the
T1936 614-619 NN denotes HIV-1
T1937 620-646 JJ denotes transactivation-responsive
T1938 647-654 NN denotes element
T1939 655-656 -LRB- denotes (
T1940 656-659 NN denotes TAR
T1941 659-660 -RRB- denotes )
T1942 661-662 -LRB- denotes (
T1943 662-664 CD denotes 32
T1944 664-665 -RRB- denotes )
T1945 665-666 -COMMA- denotes ,
T1946 667-672 NN denotes tumor
R1653 T1832 T1836 arg1Of lack,and
R1654 T1835 T1832 arg2Of activation,lack
R1655 T1835 T1833 arg1Of activation,aberrant
R1656 T1835 T1834 arg1Of activation,immune
R1659 T1836 T1831 arg1Of and,","
R1660 T1839 T1836 arg2Of develop,and
R1661 T1839 T1837 arg2Of develop,do
R1662 T1839 T1838 arg1Of develop,not
R1663 T1839 T1841 arg1Of develop,despite
R1664 T1840 T1839 arg2Of AIDS,develop
R1665 T1844 T1841 arg2Of replication,despite
R1666 T1844 T1842 arg1Of replication,high
R1667 T1844 T1843 arg1Of replication,virus
R1668 T1844 T1845 arg1Of replication,(
R1669 T1846 T1845 arg2Of "28,29",(
R1670 T1847 T1845 arg3Of ),(
R1671 T1850 T1858 arg1Of understanding,may
R1672 T1850 T1859 arg1Of understanding,provide
R1673 T1852 T1850 arg2Of mechanisms,understanding
R1674 T1852 T1851 arg1Of mechanisms,the
R1675 T1852 T1853 arg1Of mechanisms,of
R1676 T1852 T1856 arg1Of mechanisms,by
R1677 T1855 T1853 arg2Of deregulation,of
R1678 T1855 T1854 arg1Of deregulation,NF-κB
R1679 T1857 T1856 arg2Of HIV-1,by
R1680 T1859 T1848 arg1Of provide,Thus
R1681 T1859 T1849 arg1Of provide,","
R1682 T1859 T1858 arg2Of provide,may
R1683 T1859 T1862 arg1Of provide,into
R1684 T1861 T1859 arg2Of insights,provide
R1685 T1861 T1860 arg1Of insights,further
R1686 T1864 T1862 arg2Of pathogenesis,into
R1687 T1864 T1863 arg1Of pathogenesis,AIDS
R1688 T1867 T1865 arg2Of entry,In
R1689 T1867 T1866 arg1Of entry,HIV-1
R1690 T1870 T1869 arg1Of binding,the
R1691 T1870 T1871 arg1Of binding,of
R1692 T1870 T1876 arg1Of binding,to
R1693 T1870 T1878 arg1Of binding,induces
R1694 T1875 T1871 arg2Of envelope,of
R1695 T1875 T1872 arg1Of envelope,the
R1696 T1875 T1873 arg1Of envelope,gp120
R1697 T1875 T1874 arg1Of envelope,viral
R1698 T1877 T1876 arg2Of CD4,to
R1699 T1878 T1865 arg1Of induces,In
R1700 T1878 T1868 arg1Of induces,","
R1701 T1878 T1882 arg1Of induces,by
R1702 T1881 T1878 arg2Of activity,induces
R1703 T1881 T1879 arg1Of activity,the
R1704 T1881 T1880 arg1Of activity,NF-κB
R1705 T1883 T1884 arg1Of activation,of
R1706 T1883 T1889 arg1Of activation,and
R1707 T1885 T1884 arg2Of IKK,of
R1708 T1885 T1886 arg1Of IKK,(
R1709 T1887 T1886 arg2Of 30,(
R1710 T1888 T1886 arg3Of ),(
R1711 T1889 T1882 arg2Of and,by
R1712 T1890 T1889 arg2Of procaspase,and
R1713 T1890 T1891 arg1Of procaspase,8
R1714 T1890 T1892 arg1Of procaspase,(
R1715 T1893 T1892 arg2Of 31,(
R1716 T1894 T1892 arg3Of ),(
R1717 T1897 T1895 arg2Of integration,Following
R1718 T1897 T1896 arg1Of integration,viral
R1719 T1904 T1899 arg1Of protein,the
R1720 T1904 T1900 arg1Of protein,early
R1721 T1904 T1901 arg2Of protein,encoded
R1722 T1904 T1902 arg1Of protein,HIV-1
R1723 T1904 T1903 arg1Of protein,Tat
R1724 T1904 T1905 arg1Of protein,interacts
R1725 T1904 T1915 arg1Of protein,sustain
R1726 T1905 T1895 arg1Of interacts,Following
R1727 T1905 T1898 arg1Of interacts,","
R1728 T1905 T1906 arg1Of interacts,with
R1729 T1909 T1908 arg1Of RNA,HIV-1
R1730 T1909 T1910 arg1Of RNA,and
R1731 T1910 T1906 arg2Of and,with
R1732 T1910 T1907 arg1Of and,the
R1733 T1913 T1910 arg2Of factors,and
R1734 T1913 T1911 arg1Of factors,host
R1735 T1913 T1912 arg1Of factors,cell
R1736 T1915 T1905 arg2Of sustain,interacts
R1737 T1915 T1914 arg1Of sustain,to
R1738 T1918 T1915 arg2Of replication,sustain
R1739 T1918 T1916 arg1Of replication,the
R1740 T1918 T1917 arg1Of replication,viral
R1741 T1919 T1920 arg1Of Tat,binds
R1742 T1920 T1921 arg1Of binds,to
R1744 T1924 T1922 arg1Of structures,RNA
R1745 T1924 T1923 arg1Of structures,stem-loop
R1746 T1924 T1925 arg2Of structures,generated
R1747 T1924 T1933 arg1Of structures,","
R1748 T1924 T1934 arg1Of structures,including
R1749 T1924 T1945 arg1Of structures,","
R1750 T1925 T1926 arg1Of generated,by
R1751 T1929 T1926 arg2Of end,by
R1755 T1929 T1927 arg1Of end,the
R1758 T1929 T1928 arg1Of end,5′
R1761 T1929 T1930 arg1Of end,of
R1762 T1932 T1930 arg2Of transcripts,of
R1766 T1932 T1931 arg1Of transcripts,target
R1769 T1938 T1934 arg2Of element,including
R1779 T1938 T1935 arg1Of element,the
R1780 T1938 T1936 arg1Of element,HIV-1
R1781 T1938 T1937 arg1Of element,transactivation-responsive
R1786 T1938 T1939 arg1Of element,(
R1788 T1938 T1942 arg1Of element,(
R1791 T1940 T1939 arg2Of TAR,(
R1797 T1941 T1939 arg3Of ),(
R1804 T1943 T1942 arg2Of 32,(
R1810 T1944 T1942 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2722 1-9 NN denotes mangabey
T2723 9-10 , denotes ,
T2724 11-15 VBP denotes lack
T2725 16-24 JJ denotes aberrant
T2726 25-31 JJ denotes immune
T2727 32-42 NN denotes activation
T2728 43-46 CC denotes and
T2729 47-49 VB denotes do
T2730 50-53 RB denotes not
T2731 54-61 VB denotes develop
T2732 62-66 NNP denotes AIDS
T2733 67-74 IN denotes despite
T2734 75-79 JJ denotes high
T2735 80-85 NN denotes virus
T2736 86-97 NN denotes replication
T2737 98-99 -LRB- denotes (
T2738 99-104 CD denotes 28,29
T2739 104-105 -RRB- denotes )
T2740 105-106 . denotes .
T2741 107-111 RB denotes Thus
T2742 111-112 , denotes ,
T2743 113-126 VBG denotes understanding
T2744 127-130 DT denotes the
T2745 131-141 NNS denotes mechanisms
T2746 142-144 IN denotes of
T2747 145-150 JJ denotes NF-κB
T2748 151-163 NN denotes deregulation
T2749 164-166 IN denotes by
T2750 167-172 NNP denotes HIV-1
T2751 173-176 MD denotes may
T2752 177-184 VB denotes provide
T2753 185-192 JJ denotes further
T2754 193-201 NNS denotes insights
T2755 202-206 IN denotes into
T2756 207-211 NNP denotes AIDS
T2757 212-224 NN denotes pathogenesis
T2758 224-225 . denotes .
T2759 226-228 IN denotes In
T2760 229-234 JJ denotes HIV-1
T2761 235-240 NN denotes entry
T2762 240-241 , denotes ,
T2763 242-245 DT denotes the
T2764 246-253 JJ denotes binding
T2765 254-256 IN denotes of
T2766 257-260 DT denotes the
T2767 261-266 NNS denotes gp120
T2768 267-272 JJ denotes viral
T2769 273-281 NN denotes envelope
T2770 282-284 TO denotes to
T2771 285-288 CD denotes CD4
T2772 289-296 VBZ denotes induces
T2773 297-300 DT denotes the
T2774 301-306 JJ denotes NF-κB
T2775 307-315 NN denotes activity
T2776 316-318 IN denotes by
T2777 319-329 NN denotes activation
T2778 330-332 IN denotes of
T2779 333-336 NNP denotes IKK
T2780 337-338 -LRB- denotes (
T2781 338-340 CD denotes 30
T2782 340-341 -RRB- denotes )
T2783 342-345 CC denotes and
T2784 346-356 NN denotes procaspase
T2785 357-358 CD denotes 8
T2786 359-360 -LRB- denotes (
T2787 360-362 CD denotes 31
T2788 362-363 -RRB- denotes )
T2789 363-364 . denotes .
T2790 365-374 VBG denotes Following
T2791 375-380 JJ denotes viral
T2792 381-392 NN denotes integration
T2793 392-393 , denotes ,
T2794 394-397 DT denotes the
T2795 398-403 JJ denotes early
T2796 404-411 JJ denotes encoded
T2797 412-417 NNP denotes HIV-1
T2798 418-421 NNP denotes Tat
T2799 422-429 NN denotes protein
T2800 430-439 NNS denotes interacts
T2801 440-444 IN denotes with
T2802 445-448 DT denotes the
T2803 449-454 NNP denotes HIV-1
T2804 455-458 NNP denotes RNA
T2805 459-462 CC denotes and
T2806 463-467 NN denotes host
T2807 468-472 NN denotes cell
T2808 473-480 NNS denotes factors
T2809 481-483 TO denotes to
T2810 484-491 VB denotes sustain
T2811 492-495 DT denotes the
T2812 496-501 JJ denotes viral
T2813 502-513 NN denotes replication
T2814 513-514 . denotes .
T2815 515-518 NNP denotes Tat
T2816 519-524 VBZ denotes binds
T2817 525-527 TO denotes to
T2818 528-531 NNP denotes RNA
T2819 532-541 JJ denotes stem-loop
T2820 542-552 NNS denotes structures
T2821 553-562 VBN denotes generated
T2822 563-565 IN denotes by
T2823 566-569 DT denotes the
T2824 570-571 CD denotes 5
T2825 571-572 NN denotes ′
T2826 573-576 NN denotes end
T2827 577-579 IN denotes of
T2828 580-586 NN denotes target
T2829 587-598 NNS denotes transcripts
T2830 598-599 , denotes ,
T2831 600-609 VBG denotes including
T2832 610-613 DT denotes the
T2833 614-619 NNP denotes HIV-1
T2834 620-646 JJ denotes transactivation-responsive
T2835 647-654 NN denotes element
T2836 655-656 -LRB- denotes (
T2837 656-659 NNP denotes TAR
T2838 659-660 -RRB- denotes )
T2839 661-662 -LRB- denotes (
T2840 662-664 CD denotes 32
T2841 664-665 -RRB- denotes )
T2842 665-666 , denotes ,
T2843 667-672 NN denotes tumor
R2440 T2765 T2764 prep of,binding
R2444 T2766 T2769 det the,envelope
R2448 T2767 T2769 nmod gp120,envelope
R2453 T2768 T2769 amod viral,envelope
R2458 T2769 T2765 pobj envelope,of
R2463 T2770 T2772 advmod to,induces
R2467 T2771 T2772 nsubj CD4,induces
R2468 T2725 T2727 amod aberrant,activation
R2469 T2726 T2727 amod immune,activation
R2470 T2727 T2724 dobj activation,lack
R2471 T2728 T2724 cc and,lack
R2472 T2772 T2772 ROOT induces,induces
R2473 T2773 T2775 det the,activity
R2475 T2774 T2775 amod NF-κB,activity
R2479 T2775 T2772 dobj activity,induces
R2483 T2776 T2775 prep by,activity
R2486 T2777 T2776 pobj activation,by
R2489 T2778 T2777 prep of,activation
R2490 T2779 T2778 pobj IKK,of
R2492 T2741 T2752 advmod Thus,provide
R2493 T2780 T2779 punct (,IKK
R2494 T2742 T2752 punct ",",provide
R2495 T2743 T2752 csubj understanding,provide
R2496 T2781 T2779 appos 30,IKK
R2497 T2744 T2745 det the,mechanisms
R2498 T2745 T2743 dobj mechanisms,understanding
R2499 T2746 T2745 prep of,mechanisms
R2500 T2782 T2779 punct ),IKK
R2501 T2747 T2748 amod NF-κB,deregulation
R2502 T2748 T2746 pobj deregulation,of
R2503 T2749 T2745 prep by,mechanisms
R2504 T2750 T2749 pobj HIV-1,by
R2505 T2751 T2752 aux may,provide
R2506 T2752 T2752 ROOT provide,provide
R2507 T2783 T2777 cc and,activation
R2508 T2753 T2754 amod further,insights
R2509 T2754 T2752 dobj insights,provide
R2510 T2755 T2752 prep into,provide
R2511 T2784 T2777 conj procaspase,activation
R2512 T2756 T2757 compound AIDS,pathogenesis
R2513 T2757 T2755 pobj pathogenesis,into
R2514 T2758 T2752 punct .,provide
R2515 T2785 T2784 nummod 8,procaspase
R2516 T2759 T2772 prep In,induces
R2517 T2760 T2761 compound HIV-1,entry
R2518 T2761 T2759 pobj entry,In
R2519 T2762 T2772 punct ",",induces
R2520 T2786 T2787 punct (,31
R2521 T2763 T2764 det the,binding
R2522 T2764 T2772 nsubj binding,induces
R2523 T2787 T2784 npadvmod 31,procaspase
R2524 T2788 T2772 punct ),induces
R2525 T2789 T2772 punct .,induces
R2526 T2790 T2800 prep Following,interacts
R2527 T2830 T2829 punct ",",transcripts
R2528 T2831 T2829 prep including,transcripts
R2529 T2791 T2792 amod viral,integration
R2530 T2832 T2835 det the,element
R2531 T2833 T2835 nmod HIV-1,element
R2532 T2792 T2790 pobj integration,Following
R2533 T2834 T2835 amod transactivation-responsive,element
R2534 T2835 T2831 pobj element,including
R2535 T2836 T2835 punct (,element
R2536 T2837 T2835 appos TAR,element
R2537 T2793 T2800 punct ",",interacts
R2538 T2838 T2835 punct ),element
R2539 T2839 T2835 punct (,element
R2540 T2794 T2799 det the,protein
R2541 T2840 T2835 appos 32,element
R2542 T2841 T2835 punct ),element
R2543 T2842 T2835 punct ",",element
R2544 T2795 T2799 amod early,protein
R2547 T2796 T2799 amod encoded,protein
R2551 T2797 T2798 compound HIV-1,Tat
R2557 T2798 T2799 compound Tat,protein
R2560 T2799 T2800 nsubj protein,interacts
R2564 T2800 T2800 ROOT interacts,interacts
R2568 T2801 T2800 prep with,interacts
R2570 T2802 T2804 det the,RNA
R2571 T2803 T2804 compound HIV-1,RNA
R2573 T2804 T2801 pobj RNA,with
R2577 T2805 T2804 cc and,RNA
R2581 T2806 T2807 compound host,cell
R2585 T2807 T2808 compound cell,factors
R2589 T2808 T2804 conj factors,RNA
R2594 T2809 T2810 aux to,sustain
R2598 T2810 T2800 xcomp sustain,interacts
R2604 T2811 T2813 det the,replication
R2605 T2812 T2813 amod viral,replication
R2609 T2813 T2810 dobj replication,sustain
R2613 T2814 T2800 punct .,interacts
R2616 T2815 T2816 nsubj Tat,binds
R2619 T2816 T2816 ROOT binds,binds
R2621 T2817 T2816 prep to,binds
R2625 T2818 T2817 pobj RNA,to
R2629 T2819 T2820 amod stem-loop,structures
R2633 T2820 T2818 dobj structures,RNA
R2637 T2821 T2820 acl generated,structures
R2641 T2822 T2821 agent by,generated
R2646 T2823 T2826 det the,end
R2651 T2824 T2825 nummod 5,′
R2658 T2825 T2826 compound ′,end
R2662 T2826 T2822 pobj end,by
R2666 T2827 T2826 prep of,end
R2671 T2828 T2829 compound target,transcripts
R2675 T2829 T2827 pobj transcripts,of
R2474 T2729 T2731 aux do,develop
R2476 T2730 T2731 neg not,develop
R2477 T2731 T2724 conj develop,lack
R2478 T2732 T2731 dobj AIDS,develop
R2480 T2733 T2731 prep despite,develop
R2481 T2734 T2736 amod high,replication
R2482 T2735 T2736 compound virus,replication
R2484 T2736 T2733 pobj replication,despite
R2485 T2737 T2736 punct (,replication
R2487 T2738 T2736 appos "28,29",replication
R2488 T2739 T2736 punct ),replication

GO-BP

Id Subject Object Predicate Lexical cue
T3174 301-329 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activity by activation
T3177 333-336 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK
T3190 212-224 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T3191 496-513 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T3192 496-513 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T3193 620-635 http://purl.obolibrary.org/obo/GO_2000144 denotes transactivation

GO-MF

Id Subject Object Predicate Lexical cue
T3231 246-253 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T3236 333-336 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK

GO-CC

Id Subject Object Predicate Lexical cue
T3213 468-472 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T3218 463-467 http://purl.obolibrary.org/obo/GO_0018995 denotes host
T3219 267-281 http://purl.obolibrary.org/obo/GO_0019031 denotes viral envelope
T3220 273-281 http://purl.obolibrary.org/obo/GO_0009274 denotes envelope
T3221 463-472 http://purl.obolibrary.org/obo/GO_0043657 denotes host cell

sentences

Id Subject Object Predicate Lexical cue
T1442 107-225 Sentence denotes Thus, understanding the mechanisms of NF-κB deregulation by HIV-1 may provide further insights into AIDS pathogenesis.
T1443 226-364 Sentence denotes In HIV-1 entry, the binding of the gp120 viral envelope to CD4 induces the NF-κB activity by activation of IKK (30) and procaspase 8 (31).
T1444 365-514 Sentence denotes Following viral integration, the early encoded HIV-1 Tat protein interacts with the HIV-1 RNA and host cell factors to sustain the viral replication.
T24 107-225 Sentence denotes Thus, understanding the mechanisms of NF-κB deregulation by HIV-1 may provide further insights into AIDS pathogenesis.
T25 226-364 Sentence denotes In HIV-1 entry, the binding of the gp120 viral envelope to CD4 induces the NF-κB activity by activation of IKK (30) and procaspase 8 (31).
T26 365-514 Sentence denotes Following viral integration, the early encoded HIV-1 Tat protein interacts with the HIV-1 RNA and host cell factors to sustain the viral replication.

events-check-again

Id Subject Object Predicate Lexical cue
T4119 246-253 Binding denotes binding
T4120 261-266 Protein denotes gp120
T4121 285-288 Protein denotes CD4
T4122 289-296 Positive_regulation denotes induces
T4123 319-329 Positive_regulation denotes activation
T4124 346-358 Protein denotes procaspase 8
T4125 418-421 Protein denotes Tat
T4126 430-439 Binding denotes interacts
T4127 515-518 Protein denotes Tat
T4128 519-524 Binding denotes binds
R3990 T4127 T4128 themeOf Tat,binds
R3970 T4119 T4122 causeOf binding,induces
R3973 T4120 T4119 themeOf gp120,binding
R3974 T4121 T4119 themeOf CD4,binding
R3975 T4123 T4122 themeOf activation,induces
R3979 T4124 T4123 themeOf procaspase 8,activation
R3987 T4125 T4126 themeOf Tat,interacts

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4267 145-150 Protein denotes NF-κB
T4268 261-281 Protein denotes gp120 viral envelope
T4269 285-288 Protein denotes CD4
T4270 301-306 Protein denotes NF-κB
T4271 246-253 Binding denotes binding
T4272 289-296 Positive_regulation denotes induces
T4273 398-429 Protein denotes early encoded HIV-1 Tat protein
T4274 430-439 Binding denotes interacts
T4275 515-518 Protein denotes Tat
T4280 519-524 Binding denotes binds
T4281 519-524 Binding denotes binds
T4282 519-524 Binding denotes binds
T4283 519-524 Binding denotes binds
T4284 519-524 Binding denotes binds
T4285 519-524 Binding denotes binds
T4286 519-524 Binding denotes binds
R3860 T4268 T4271 themeOf gp120 viral envelope,binding
R3861 T4269 T4271 themeOf CD4,binding
R3863 T4270 T4272 themeOf NF-κB,induces
R3865 T4271 T4272 causeOf binding,induces
R3866 T4273 T4274 themeOf early encoded HIV-1 Tat protein,interacts
R3867 T4275 T4280 themeOf Tat,binds
R3868 T4275 T4281 themeOf Tat,binds
R3869 T4275 T4282 themeOf Tat,binds
R3870 T4275 T4283 themeOf Tat,binds
R3871 T4275 T4284 themeOf Tat,binds
R3872 T4275 T4285 themeOf Tat,binds
R3873 T4275 T4286 themeOf Tat,binds

test2

Id Subject Object Predicate Lexical cue
T1187 261-266 Protein denotes gp120
T1188 285-288 Protein denotes CD4
T1189 319-329 Positive_regulation denotes activation
T1190 346-358 Protein denotes procaspase 8
T1191 418-421 Protein denotes Tat
T1192 430-439 Binding denotes interacts
T1193 515-518 Protein denotes Tat
T1194 519-524 Binding denotes binds
R1017 T1190 T1189 themeOf procaspase 8,activation
R1018 T1191 T1192 themeOf Tat,interacts
R1019 T1193 T1194 themeOf Tat,binds

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1364 246-253 Binding denotes binding
T1365 261-266 Protein denotes gp120
T1366 285-288 Protein denotes CD4
T1367 289-296 Positive_regulation denotes induces
T1368 319-329 Positive_regulation denotes activation
T1369 346-358 Protein denotes procaspase 8
T1370 418-421 Protein denotes Tat
T1371 430-439 Binding denotes interacts
T1372 515-518 Protein denotes Tat
T1373 519-524 Binding denotes binds
R1225 T1364 T1367 causeOf binding,induces
R1226 T1365 T1364 themeOf gp120,binding
R1227 T1366 T1364 themeOf CD4,binding
R1228 T1368 T1367 themeOf activation,induces
R1229 T1369 T1368 themeOf procaspase 8,activation
R1230 T1370 T1371 themeOf Tat,interacts
R1231 T1372 T1373 themeOf Tat,binds

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2274 285-288 P01730 denotes CD4
T2275 418-421 P04610 denotes Tat
T2276 418-421 P04608 denotes Tat
T2277 418-421 P04605 denotes Tat
T2278 418-421 Q8UMQ1 denotes Tat
T2279 515-518 P04608 denotes Tat
T2280 515-518 P04610 denotes Tat
T2281 515-518 P04605 denotes Tat
T2282 515-518 Q8UMQ1 denotes Tat