> top > docs > PMC:3333881 > spans > 33670-33917 > annotations

PMC:3333881 / 33670-33917 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15565 0-2 TO denotes To
T15566 3-11 VB denotes validate
T15567 12-15 DT denotes the
T15568 16-25 VB denotes predicted
T15569 26-31 NN denotes NF-κB
T15570 32-39 NN denotes binding
T15571 40-45 NN denotes sites
T15572 46-48 IN denotes of
T15573 49-52 DT denotes the
T15574 53-59 NN denotes MIP-1α
T15575 60-68 NN denotes promoter
T15576 68-69 -COMMA- denotes ,
T15577 70-72 PRP denotes we
T15578 73-83 VB denotes stimulated
T15579 84-88 NN denotes HeLa
T15580 89-94 NN denotes cells
T15581 95-99 IN denotes with
T15582 100-105 NN denotes TNF-α
T15583 105-106 -COMMA- denotes ,
T15584 107-108 DT denotes a
T15585 109-119 JJ denotes well-known
T15586 120-125 NN denotes NF-κB
T15587 126-133 NN denotes inducer
T15588 133-134 -COMMA- denotes ,
T15589 135-138 CC denotes and
T15590 139-147 VB denotes measured
T15591 148-151 DT denotes the
T15592 152-162 NN denotes expression
T15593 163-169 NN denotes levels
T15594 170-172 IN denotes of
T15595 173-179 NN denotes MIP-1α
T15596 180-182 IN denotes by
T15597 183-192 JJ denotes real-time
T15598 193-196 NN denotes PCR
T15599 196-197 -COMMA- denotes ,
T15600 198-201 CC denotes and
T15601 202-205 DT denotes the
T15602 206-209 NN denotes p65
T15603 210-219 NN denotes occupancy
T15604 220-222 IN denotes of
T15605 223-226 DT denotes the
T15606 227-232 NN denotes NF-κB
T15607 233-238 NN denotes sites
T15608 239-241 IN denotes by
T15609 242-246 NN denotes ChIP
R12520 T15566 T15565 arg1Of validate,To
R12521 T15571 T15566 arg2Of sites,validate
R12522 T15571 T15567 arg1Of sites,the
R12523 T15571 T15568 arg2Of sites,predicted
R12524 T15571 T15569 arg1Of sites,NF-κB
R12525 T15571 T15570 arg1Of sites,binding
R12526 T15571 T15572 arg1Of sites,of
R12527 T15575 T15572 arg2Of promoter,of
R12528 T15575 T15573 arg1Of promoter,the
R12529 T15575 T15574 arg1Of promoter,MIP-1α
R12530 T15577 T15566 arg1Of we,validate
R12531 T15577 T15578 arg1Of we,stimulated
R12532 T15577 T15590 arg1Of we,measured
R12533 T15578 T15581 arg1Of stimulated,with
R12534 T15578 T15589 arg1Of stimulated,and
R12535 T15580 T15578 arg2Of cells,stimulated
R12536 T15580 T15579 arg1Of cells,HeLa
R12537 T15582 T15581 arg2Of TNF-α,with
R12538 T15582 T15583 arg1Of TNF-α,","
R12539 T15587 T15583 arg2Of inducer,","
R12540 T15587 T15584 arg1Of inducer,a
R12541 T15587 T15585 arg1Of inducer,well-known
R12542 T15587 T15586 arg1Of inducer,NF-κB
R12543 T15589 T15565 modOf and,To
R12544 T15589 T15576 arg1Of and,","
R12545 T15589 T15588 arg1Of and,","
R12546 T15590 T15589 arg2Of measured,and
R12547 T15593 T15591 arg1Of levels,the
R12548 T15593 T15592 arg1Of levels,expression
R12549 T15593 T15594 arg1Of levels,of
R12550 T15593 T15600 arg1Of levels,and
R12551 T15595 T15594 arg2Of MIP-1α,of
R12552 T15595 T15596 arg1Of MIP-1α,by
R12553 T15598 T15596 arg2Of PCR,by
R12554 T15598 T15597 arg1Of PCR,real-time
R12555 T15600 T15590 arg2Of and,measured
R12556 T15600 T15599 arg1Of and,","
R12557 T15603 T15600 arg2Of occupancy,and
R12558 T15603 T15601 arg1Of occupancy,the
R12559 T15603 T15602 arg1Of occupancy,p65
R12560 T15603 T15604 arg1Of occupancy,of
R12561 T15603 T15608 arg1Of occupancy,by
R12562 T15607 T15604 arg2Of sites,of
R12563 T15607 T15605 arg1Of sites,the
R12564 T15607 T15606 arg1Of sites,NF-κB
R12565 T15609 T15608 arg2Of ChIP,by

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16349 0-2 TO denotes To
T16350 3-11 VB denotes validate
T16351 12-15 DT denotes the
T16352 16-25 VBN denotes predicted
T16353 26-31 NN denotes NF-κB
T16354 32-39 JJ denotes binding
T16355 40-45 NNS denotes sites
T16356 46-48 IN denotes of
T16357 49-52 DT denotes the
T16358 53-59 JJ denotes MIP-1α
T16359 60-68 NN denotes promoter
T16360 68-69 , denotes ,
T16361 70-72 PRP denotes we
T16362 73-83 VBD denotes stimulated
T16363 84-88 NNP denotes HeLa
T16364 89-94 NNS denotes cells
T16365 95-99 IN denotes with
T16366 100-105 NNP denotes TNF-α
T16367 105-106 , denotes ,
T16368 107-108 DT denotes a
T16369 109-119 JJ denotes well-known
T16370 120-125 NN denotes NF-κB
T16371 126-133 NN denotes inducer
T16372 133-134 , denotes ,
T16373 135-138 CC denotes and
T16374 139-147 VBD denotes measured
T16375 148-151 DT denotes the
T16376 152-162 NN denotes expression
T16377 163-169 NNS denotes levels
T16378 170-172 IN denotes of
T16379 173-179 NN denotes MIP-1α
T16380 180-182 IN denotes by
T16381 183-192 JJ denotes real-time
T16382 193-196 NNP denotes PCR
T16383 196-197 , denotes ,
T16384 198-201 CC denotes and
T16385 202-205 DT denotes the
T16386 206-209 NNS denotes p65
T16387 210-219 NN denotes occupancy
T16388 220-222 IN denotes of
T16389 223-226 DT denotes the
T16390 227-232 NNP denotes NF-κB
T16391 233-238 NNS denotes sites
T16392 239-241 IN denotes by
T16393 242-246 NNP denotes ChIP
T16394 246-247 . denotes .
R13139 T16349 T16350 aux To,validate
R13140 T16350 T16362 advcl validate,stimulated
R13141 T16351 T16355 det the,sites
R13142 T16352 T16355 amod predicted,sites
R13143 T16353 T16355 amod NF-κB,sites
R13144 T16354 T16355 amod binding,sites
R13145 T16355 T16350 dobj sites,validate
R13146 T16356 T16355 prep of,sites
R13147 T16357 T16359 det the,promoter
R13148 T16358 T16359 amod MIP-1α,promoter
R13149 T16359 T16356 pobj promoter,of
R13150 T16360 T16362 punct ",",stimulated
R13151 T16361 T16362 nsubj we,stimulated
R13152 T16362 T16362 ROOT stimulated,stimulated
R13153 T16363 T16364 compound HeLa,cells
R13154 T16364 T16362 dobj cells,stimulated
R13155 T16365 T16362 prep with,stimulated
R13156 T16366 T16365 pobj TNF-α,with
R13157 T16367 T16366 punct ",",TNF-α
R13158 T16368 T16371 det a,inducer
R13159 T16369 T16371 amod well-known,inducer
R13160 T16370 T16371 compound NF-κB,inducer
R13161 T16371 T16366 appos inducer,TNF-α
R13162 T16372 T16362 punct ",",stimulated
R13163 T16373 T16362 cc and,stimulated
R13164 T16374 T16362 conj measured,stimulated
R13165 T16375 T16377 det the,levels
R13166 T16376 T16377 compound expression,levels
R13167 T16377 T16374 dobj levels,measured
R13168 T16378 T16377 prep of,levels
R13169 T16379 T16378 pobj MIP-1α,of
R13170 T16380 T16374 prep by,measured
R13171 T16381 T16382 amod real-time,PCR
R13172 T16382 T16380 pobj PCR,by
R13173 T16383 T16374 punct ",",measured
R13174 T16384 T16374 cc and,measured
R13175 T16385 T16387 det the,occupancy
R13176 T16386 T16387 amod p65,occupancy
R13177 T16387 T16374 conj occupancy,measured
R13178 T16388 T16387 prep of,occupancy
R13179 T16389 T16391 det the,sites
R13180 T16390 T16391 compound NF-κB,sites
R13181 T16391 T16388 pobj sites,of
R13182 T16392 T16387 prep by,occupancy
R13183 T16393 T16392 pobj ChIP,by
R13184 T16394 T16362 punct .,stimulated

GO-MF

Id Subject Object Predicate Lexical cue
T16621 26-39 http://purl.obolibrary.org/obo/GO_0051059 denotes NF-κB binding
T16622 32-39 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T16628 89-94 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T15230 0-247 Sentence denotes To validate the predicted NF-κB binding sites of the MIP-1α promoter, we stimulated HeLa cells with TNF-α, a well-known NF-κB inducer, and measured the expression levels of MIP-1α by real-time PCR, and the p65 occupancy of the NF-κB sites by ChIP.
T202 0-247 Sentence denotes To validate the predicted NF-κB binding sites of the MIP-1α promoter, we stimulated HeLa cells with TNF-α, a well-known NF-κB inducer, and measured the expression levels of MIP-1α by real-time PCR, and the p65 occupancy of the NF-κB sites by ChIP.

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T17329 53-59 Protein denotes MIP-1α
T17330 100-105 Protein denotes TNF-α
T17331 152-162 Gene_expression denotes expression true
T17332 173-179 Protein denotes MIP-1α
T17333 206-209 Protein denotes p65
T17334 210-219 Binding denotes occupancy true
T17335 227-238 Entity denotes NF-κB sites
R13938 T17332 T17331 themeOf MIP-1α,expression
R13939 T17333 T17334 themeOf p65,occupancy
R13940 T17335 T17334 themeOf NF-κB sites,occupancy
R13941 T17335 T17332 partOf NF-κB sites,MIP-1α

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T17475 26-31 Protein denotes NF-κB
T17476 53-68 Protein denotes MIP-1α promoter
T17477 100-105 Protein denotes TNF-α
T17478 120-125 Protein denotes NF-κB
T17479 173-179 Protein denotes MIP-1α
T17480 206-209 Protein denotes p65
T17481 227-238 Protein denotes NF-κB sites
T17482 126-133 Positive_regulation denotes inducer
T17483 152-162 Gene_expression denotes expression
T17484 210-219 Positive_regulation denotes occupancy
T17485 210-219 Positive_regulation denotes occupancy
R14045 T17478 T17482 themeOf NF-κB,inducer
R14046 T17479 T17483 themeOf MIP-1α,expression
R14047 T17480 T17484 themeOf p65,occupancy
R14048 T17481 T17485 themeOf NF-κB sites,occupancy

test2

Id Subject Object Predicate Lexical cue Negation
T15011 53-59 Protein denotes MIP-1α
T15012 100-105 Protein denotes TNF-α
T15013 152-162 Gene_expression denotes expression
T15014 173-179 Protein denotes MIP-1α true
T15015 206-209 Protein denotes p65 true
T15016 210-219 Binding denotes occupancy true
T15017 227-238 Entity denotes NF-κB sites
R12024 T15014 T15013 themeOf MIP-1α,expression
R12025 T15015 T15016 themeOf p65,occupancy
R12026 T15017 T15015 partOf NF-κB sites,p65
R12027 T15017 T15014 partOf NF-κB sites,MIP-1α
R12028 T15017 T15013 themeOf NF-κB sites,expression
R12029 T15017 T15016 themeOf NF-κB sites,occupancy

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T15146 53-59 Protein denotes MIP-1α
T15147 100-105 Protein denotes TNF-α
T15148 152-162 Gene_expression denotes expression true
T15149 173-179 Protein denotes MIP-1α
T15150 206-209 Protein denotes p65
T15151 210-219 Binding denotes occupancy true
T15152 227-238 Entity denotes NF-κB sites
R12121 T15149 T15148 themeOf MIP-1α,expression
R12122 T15150 T15151 themeOf p65,occupancy
R12123 T15152 T15151 themeOf NF-κB sites,occupancy
R12124 T15152 T15149 partOf NF-κB sites,MIP-1α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15915 53-59 P10147 denotes MIP-1α
T15916 100-103 P01375 denotes TNF
T15917 100-105 P01375 denotes TNF-α
T15918 173-179 P10147 denotes MIP-1α
T15919 206-209 Q04206 denotes p65
T15920 206-209 P21579 denotes p65