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PMC:3333881 / 3096-3363 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22187158-7853483-77584410 263-265 7853483 denotes 25
22187158-11160127-77584410 263-265 11160127 denotes 25
22187158-8764027-77584410 263-265 8764027 denotes 25

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1758 0-10 JJ denotes Persistent
T1759 11-21 NN denotes activation
T1760 22-24 IN denotes of
T1761 25-30 NN denotes NF-κB
T1762 31-37 VB denotes occurs
T1763 38-40 IN denotes in
T1764 41-46 JJ denotes human
T1765 47-63 NN denotes immunodeficiency
T1766 64-71 NN denotes virus-1
T1767 72-73 -LRB- denotes (
T1768 73-78 NN denotes HIV-1
T1769 78-79 -RRB- denotes )
T1770 79-88 JJ denotes -infected
T1771 89-98 NN denotes monocytes
T1772 98-99 -COMMA- denotes ,
T1773 100-111 NN denotes macrophages
T1774 112-115 CC denotes and
T1775 116-125 NN denotes microglia
T1776 125-126 -COMMA- denotes ,
T1777 127-130 CC denotes and
T1778 131-139 VB denotes enhances
T1779 140-143 DT denotes the
T1780 144-154 NN denotes expression
T1781 155-157 IN denotes of
T1782 158-174 JJ denotes NF-κB-responsive
T1783 175-180 NN denotes genes
T1784 180-181 -COMMA- denotes ,
T1785 182-191 VB denotes including
T1786 192-208 JJ denotes pro-inflammatory
T1787 209-218 NN denotes cytokines
T1788 218-219 -COMMA- denotes ,
T1789 220-224 NN denotes cell
T1790 225-233 NN denotes adhesion
T1791 234-243 NN denotes molecules
T1792 244-247 CC denotes and
T1793 248-258 NN denotes chemokines
T1794 259-260 -LRB- denotes (
T1795 260-265 CD denotes 23–25
T1796 265-266 -RRB- denotes )
R1581 T1759 T1758 arg1Of activation,Persistent
R1582 T1759 T1760 arg1Of activation,of
R1583 T1759 T1762 arg1Of activation,occurs
R1584 T1759 T1778 arg1Of activation,enhances
R1585 T1761 T1760 arg2Of NF-κB,of
R1586 T1762 T1763 arg1Of occurs,in
R1587 T1762 T1777 arg1Of occurs,and
R1588 T1766 T1764 arg1Of virus-1,human
R1589 T1766 T1765 arg1Of virus-1,immunodeficiency
R1590 T1766 T1767 arg1Of virus-1,(
R1591 T1768 T1767 arg2Of HIV-1,(
R1592 T1769 T1767 arg3Of ),(
R1593 T1771 T1772 arg1Of monocytes,","
R1594 T1772 T1774 arg1Of ",",and
R1595 T1773 T1772 arg2Of macrophages,","
R1596 T1774 T1763 arg2Of and,in
R1597 T1774 T1766 arg1Of and,virus-1
R1598 T1774 T1770 arg1Of and,-infected
R1599 T1775 T1774 arg2Of microglia,and
R1600 T1777 T1776 arg1Of and,","
R1601 T1778 T1777 arg2Of enhances,and
R1602 T1780 T1778 arg2Of expression,enhances
R1603 T1780 T1779 arg1Of expression,the
R1604 T1780 T1781 arg1Of expression,of
R1605 T1783 T1781 arg2Of genes,of
R1606 T1783 T1782 arg1Of genes,NF-κB-responsive
R1607 T1783 T1784 arg1Of genes,","
R1608 T1783 T1785 arg1Of genes,including
R1609 T1787 T1786 arg1Of cytokines,pro-inflammatory
R1610 T1787 T1788 arg1Of cytokines,","
R1611 T1788 T1792 arg1Of ",",and
R1612 T1791 T1788 arg2Of molecules,","
R1613 T1791 T1789 arg1Of molecules,cell
R1614 T1791 T1790 arg1Of molecules,adhesion
R1615 T1792 T1785 arg2Of and,including
R1616 T1793 T1792 arg2Of chemokines,and
R1617 T1793 T1794 arg1Of chemokines,(
R1618 T1795 T1794 arg2Of 23–25,(
R1619 T1796 T1794 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2646 0-10 JJ denotes Persistent
T2647 11-21 NN denotes activation
T2648 22-24 IN denotes of
T2649 25-30 JJ denotes NF-κB
T2650 31-37 VBZ denotes occurs
T2651 38-40 IN denotes in
T2652 41-46 JJ denotes human
T2653 47-63 NN denotes immunodeficiency
T2654 64-71 JJ denotes virus-1
T2655 72-73 -LRB- denotes (
T2656 73-78 NNP denotes HIV-1
T2657 78-79 -RRB- denotes )
T2658 79-80 : denotes -
T2659 80-88 VBN denotes infected
T2660 89-98 NNS denotes monocytes
T2661 98-99 , denotes ,
T2662 100-111 NNS denotes macrophages
T2663 112-115 CC denotes and
T2664 116-125 NNS denotes microglia
T2665 125-126 , denotes ,
T2666 127-130 CC denotes and
T2667 131-139 VBZ denotes enhances
T2668 140-143 DT denotes the
T2669 144-154 NN denotes expression
T2670 155-157 IN denotes of
T2671 158-174 JJ denotes NF-κB-responsive
T2672 175-180 NNS denotes genes
T2673 180-181 , denotes ,
T2674 182-191 VBG denotes including
T2675 192-208 JJ denotes pro-inflammatory
T2676 209-218 NNS denotes cytokines
T2677 218-219 , denotes ,
T2678 220-224 NN denotes cell
T2679 225-233 NN denotes adhesion
T2680 234-243 NNS denotes molecules
T2681 244-247 CC denotes and
T2682 248-258 NNS denotes chemokines
T2683 259-260 -LRB- denotes (
T2684 260-262 CD denotes 23
T2685 263-265 CD denotes 25
T2686 265-266 -RRB- denotes )
T2687 266-267 . denotes .
R2360 T2646 T2647 amod Persistent,activation
R2361 T2647 T2650 nsubj activation,occurs
R2363 T2648 T2647 prep of,activation
R2364 T2649 T2648 pobj NF-κB,of
R2366 T2650 T2650 ROOT occurs,occurs
R2368 T2651 T2650 prep in,occurs
R2369 T2652 T2653 amod human,immunodeficiency
R2370 T2653 T2651 pobj immunodeficiency,in
R2372 T2654 T2656 amod virus-1,HIV-1
R2373 T2655 T2656 punct (,HIV-1
R2374 T2656 T2650 npadvmod HIV-1,occurs
R2376 T2657 T2656 punct ),HIV-1
R2377 T2658 T2659 punct -,infected
R2378 T2659 T2660 amod infected,monocytes
R2380 T2660 T2650 conj monocytes,occurs
R2381 T2661 T2660 punct ",",monocytes
R2382 T2662 T2660 conj macrophages,monocytes
R2384 T2663 T2662 cc and,macrophages
R2385 T2664 T2662 conj microglia,macrophages
R2386 T2665 T2650 punct ",",occurs
R2388 T2666 T2650 cc and,occurs
R2389 T2667 T2650 conj enhances,occurs
R2393 T2668 T2669 det the,expression
R2395 T2669 T2667 dobj expression,enhances
R2396 T2670 T2669 prep of,expression
R2397 T2671 T2672 amod NF-κB-responsive,genes
R2399 T2672 T2670 pobj genes,of
R2400 T2673 T2672 punct ",",genes
R2401 T2674 T2672 prep including,genes
R2402 T2675 T2676 amod pro-inflammatory,cytokines
R2403 T2676 T2674 pobj cytokines,including
R2404 T2677 T2676 punct ",",cytokines
R2406 T2678 T2679 compound cell,adhesion
R2407 T2679 T2680 compound adhesion,molecules
R2408 T2680 T2676 conj molecules,cytokines
R2409 T2681 T2680 cc and,molecules
R2411 T2682 T2680 conj chemokines,molecules
R2412 T2683 T2682 punct (,chemokines
R2414 T2684 T2685 nummod 23,25
R2415 T2685 T2682 appos 25,chemokines
R2416 T2686 T2682 punct ),chemokines
R2418 T2687 T2650 punct .,occurs

GO-BP

Id Subject Object Predicate Lexical cue
T3173 11-30 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB
T3188 220-233 http://purl.obolibrary.org/obo/GO_0007155 denotes cell adhesion
T3189 220-243 http://purl.obolibrary.org/obo/GO_0060352 denotes cell adhesion molecules

GO-CC

Id Subject Object Predicate Lexical cue
T3212 220-224 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T1439 0-267 Sentence denotes Persistent activation of NF-κB occurs in human immunodeficiency virus-1 (HIV-1)-infected monocytes, macrophages and microglia, and enhances the expression of NF-κB-responsive genes, including pro-inflammatory cytokines, cell adhesion molecules and chemokines (23–25).
T21 0-267 Sentence denotes Persistent activation of NF-κB occurs in human immunodeficiency virus-1 (HIV-1)-infected monocytes, macrophages and microglia, and enhances the expression of NF-κB-responsive genes, including pro-inflammatory cytokines, cell adhesion molecules and chemokines (23–25).

ICD10

Id Subject Object Predicate Lexical cue
T3222 47-63 http://purl.bioontology.org/ontology/ICD10/D84.9 denotes immunodeficiency

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4262 25-30 Protein denotes NF-κB
T4263 158-163 Protein denotes NF-κB
T4264 11-21 Positive_regulation denotes activation
T4265 144-154 Gene_expression denotes expression
T4266 131-139 Positive_regulation denotes enhances
R3854 T4262 T4264 themeOf NF-κB,activation
R3855 T4263 T4265 themeOf NF-κB,expression
R3856 T4264 T4266 causeOf activation,enhances
R3858 T4265 T4266 themeOf expression,enhances