PMC:3333881 / 29093-29328 JSONTXT

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    pmc-enju-pas

    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    bionlp-st-ge-2016-spacy-parsed

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    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T14264","span":{"begin":154,"end":169},"obj":"http://purl.obolibrary.org/obo/GO_2000144"}],"text":"To identify the p65 domain required for binding to Tat, HeLa cells were transfected with FLAG-Tat together with HA-p65 mutants, which were deleted of the transactivation domain [p65ΔC (1–318)], or the RHD [p65ΔN (122–551)] (Figure 4C)."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T14268","span":{"begin":40,"end":47},"obj":"http://purl.obolibrary.org/obo/GO_0005488"}],"text":"To identify the p65 domain required for binding to Tat, HeLa cells were transfected with FLAG-Tat together with HA-p65 mutants, which were deleted of the transactivation domain [p65ΔC (1–318)], or the RHD [p65ΔN (122–551)] (Figure 4C)."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T14279","span":{"begin":61,"end":66},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"To identify the p65 domain required for binding to Tat, HeLa cells were transfected with FLAG-Tat together with HA-p65 mutants, which were deleted of the transactivation domain [p65ΔC (1–318)], or the RHD [p65ΔN (122–551)] (Figure 4C)."}

    sentences

    {"project":"sentences","denotations":[{"id":"T13330","span":{"begin":0,"end":235},"obj":"Sentence"},{"id":"T177","span":{"begin":0,"end":235},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"To identify the p65 domain required for binding to Tat, HeLa cells were transfected with FLAG-Tat together with HA-p65 mutants, which were deleted of the transactivation domain [p65ΔC (1–318)], or the RHD [p65ΔN (122–551)] (Figure 4C)."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T14714","span":{"begin":16,"end":19},"obj":"Protein"},{"id":"T14715","span":{"begin":20,"end":26},"obj":"Entity"},{"id":"T14716","span":{"begin":27,"end":35},"obj":"Positive_regulation"},{"id":"T14717","span":{"begin":40,"end":47},"obj":"Binding"},{"id":"T14718","span":{"begin":51,"end":54},"obj":"Protein"},{"id":"T14719","span":{"begin":89,"end":97},"obj":"Protein"},{"id":"T14720","span":{"begin":112,"end":118},"obj":"Protein"},{"id":"T14721","span":{"begin":139,"end":146},"obj":"Negative_regulation"},{"id":"T14722","span":{"begin":139,"end":146},"obj":"Negative_regulation"},{"id":"T14723","span":{"begin":154,"end":176},"obj":"Entity"},{"id":"T14724","span":{"begin":178,"end":191},"obj":"Protein"},{"id":"T14725","span":{"begin":201,"end":204},"obj":"Entity"},{"id":"T14726","span":{"begin":206,"end":221},"obj":"Protein"}],"relations":[{"id":"R11813","pred":"themeOf","subj":"T14714","obj":"T14717"},{"id":"R11814","pred":"causeOf","subj":"T14715","obj":"T14716"},{"id":"R11815","pred":"partOf","subj":"T14715","obj":"T14714"},{"id":"R11816","pred":"themeOf","subj":"T14717","obj":"T14716"},{"id":"R11817","pred":"themeOf","subj":"T14718","obj":"T14717"},{"id":"R11818","pred":"themeOf","subj":"T14723","obj":"T14722"},{"id":"R11819","pred":"partOf","subj":"T14723","obj":"T14714"},{"id":"R11820","pred":"themeOf","subj":"T14725","obj":"T14721"},{"id":"R11821","pred":"partOf","subj":"T14725","obj":"T14714"}],"attributes":[{"id":"M213","pred":"Speculation","subj":"T14716","obj":"true"}],"text":"To identify the p65 domain required for binding to Tat, HeLa cells were transfected with FLAG-Tat together with HA-p65 mutants, which were deleted of the transactivation domain [p65ΔC (1–318)], or the RHD [p65ΔN (122–551)] (Figure 4C)."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T14797","span":{"begin":16,"end":26},"obj":"Protein"},{"id":"T14798","span":{"begin":51,"end":54},"obj":"Protein"},{"id":"T14799","span":{"begin":112,"end":126},"obj":"Protein"},{"id":"T14800","span":{"begin":40,"end":47},"obj":"Binding"},{"id":"T14801","span":{"begin":27,"end":35},"obj":"Positive_regulation"}],"relations":[{"id":"R11868","pred":"themeOf","subj":"T14797","obj":"T14800"},{"id":"R11869","pred":"themeOf","subj":"T14798","obj":"T14800"},{"id":"R11870","pred":"themeOf","subj":"T14800","obj":"T14801"}],"text":"To identify the p65 domain required for binding to Tat, HeLa cells were transfected with FLAG-Tat together with HA-p65 mutants, which were deleted of the transactivation domain [p65ΔC (1–318)], or the RHD [p65ΔN (122–551)] (Figure 4C)."}

    test2

    {"project":"test2","denotations":[{"id":"T13198","span":{"begin":16,"end":19},"obj":"Protein"},{"id":"T13199","span":{"begin":20,"end":26},"obj":"Entity"},{"id":"T13200","span":{"begin":27,"end":35},"obj":"Positive_regulation"},{"id":"T13201","span":{"begin":40,"end":47},"obj":"Binding"},{"id":"T13202","span":{"begin":51,"end":54},"obj":"Protein"},{"id":"T13203","span":{"begin":72,"end":83},"obj":"Gene_expression"},{"id":"T13204","span":{"begin":89,"end":97},"obj":"Protein"},{"id":"T13205","span":{"begin":112,"end":118},"obj":"Protein"},{"id":"T13206","span":{"begin":139,"end":146},"obj":"Negative_regulation"},{"id":"T13207","span":{"begin":154,"end":176},"obj":"Entity"},{"id":"T13208","span":{"begin":178,"end":193},"obj":"Protein"},{"id":"T13209","span":{"begin":201,"end":204},"obj":"Entity"},{"id":"T13210","span":{"begin":206,"end":222},"obj":"Protein"}],"relations":[{"id":"R10681","pred":"themeOf","subj":"T13198","obj":"T13201"},{"id":"R10682","pred":"themeOf","subj":"T13198","obj":"T13203"},{"id":"R10683","pred":"partOf","subj":"T13199","obj":"T13198"},{"id":"R10684","pred":"causeOf","subj":"T13199","obj":"T13200"},{"id":"R10685","pred":"themeOf","subj":"T13201","obj":"T13200"},{"id":"R10686","pred":"themeOf","subj":"T13202","obj":"T13203"},{"id":"R10687","pred":"themeOf","subj":"T13202","obj":"T13201"},{"id":"R10688","pred":"causeOf","subj":"T13204","obj":"T13203"},{"id":"R10689","pred":"themeOf","subj":"T13207","obj":"T13206"},{"id":"R10690","pred":"partOf","subj":"T13207","obj":"T13198"},{"id":"R10691","pred":"partOf","subj":"T13209","obj":"T13198"},{"id":"R10692","pred":"themeOf","subj":"T13209","obj":"T13206"}],"text":"To identify the p65 domain required for binding to Tat, HeLa cells were transfected with FLAG-Tat together with HA-p65 mutants, which were deleted of the transactivation domain [p65ΔC (1–318)], or the RHD [p65ΔN (122–551)] (Figure 4C)."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T13283","span":{"begin":89,"end":97},"obj":"Protein"},{"id":"T13284","span":{"begin":112,"end":118},"obj":"Protein"},{"id":"T13285","span":{"begin":139,"end":146},"obj":"Negative_regulation"},{"id":"T13286","span":{"begin":139,"end":146},"obj":"Negative_regulation"},{"id":"T13287","span":{"begin":154,"end":176},"obj":"Entity"},{"id":"T13288","span":{"begin":178,"end":191},"obj":"Protein"},{"id":"T13289","span":{"begin":201,"end":204},"obj":"Entity"},{"id":"T13290","span":{"begin":206,"end":221},"obj":"Protein"},{"id":"T13278","span":{"begin":16,"end":19},"obj":"Protein"},{"id":"T13279","span":{"begin":20,"end":26},"obj":"Entity"},{"id":"T13280","span":{"begin":27,"end":35},"obj":"Positive_regulation"},{"id":"T13281","span":{"begin":40,"end":47},"obj":"Binding"},{"id":"T13282","span":{"begin":51,"end":54},"obj":"Protein"}],"relations":[{"id":"R10732","pred":"themeOf","subj":"T13278","obj":"T13281"},{"id":"R10733","pred":"causeOf","subj":"T13279","obj":"T13280"},{"id":"R10734","pred":"partOf","subj":"T13279","obj":"T13278"},{"id":"R10735","pred":"themeOf","subj":"T13281","obj":"T13280"},{"id":"R10736","pred":"themeOf","subj":"T13282","obj":"T13281"},{"id":"R10737","pred":"themeOf","subj":"T13287","obj":"T13286"},{"id":"R10738","pred":"partOf","subj":"T13287","obj":"T13278"},{"id":"R10739","pred":"themeOf","subj":"T13289","obj":"T13285"},{"id":"R10740","pred":"partOf","subj":"T13289","obj":"T13278"}],"attributes":[{"id":"M176","pred":"Speculation","subj":"T13280","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"To identify the p65 domain required for binding to Tat, HeLa cells were transfected with FLAG-Tat together with HA-p65 mutants, which were deleted of the transactivation domain [p65ΔC (1–318)], or the RHD [p65ΔN (122–551)] (Figure 4C)."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T13797","span":{"begin":16,"end":19},"obj":"P21579"},{"id":"T13798","span":{"begin":16,"end":19},"obj":"Q04206"},{"id":"T13799","span":{"begin":51,"end":54},"obj":"Q8UMQ1"},{"id":"T13800","span":{"begin":51,"end":54},"obj":"P04610"},{"id":"T13801","span":{"begin":51,"end":54},"obj":"P04608"},{"id":"T13802","span":{"begin":51,"end":54},"obj":"P04605"},{"id":"T13803","span":{"begin":94,"end":97},"obj":"P04608"},{"id":"T13804","span":{"begin":94,"end":97},"obj":"P04605"},{"id":"T13805","span":{"begin":94,"end":97},"obj":"P04610"},{"id":"T13806","span":{"begin":94,"end":97},"obj":"Q8UMQ1"},{"id":"T13807","span":{"begin":115,"end":118},"obj":"Q04206"},{"id":"T13808","span":{"begin":115,"end":118},"obj":"P21579"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"To identify the p65 domain required for binding to Tat, HeLa cells were transfected with FLAG-Tat together with HA-p65 mutants, which were deleted of the transactivation domain [p65ΔC (1–318)], or the RHD [p65ΔN (122–551)] (Figure 4C)."}