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PMC:3333881 / 25706-25852 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11833 0-3 DT denotes The
T11834 4-7 NN denotes p65
T11835 8-11 NN denotes DNA
T11836 12-19 NN denotes binding
T11837 20-28 NN denotes activity
T11838 29-32 VB denotes was
T11839 33-42 VB denotes inhibited
T11840 43-45 IN denotes by
T11841 46-51 NN denotes IκB-α
T11842 52-55 CC denotes and
T11843 56-64 VB denotes restored
T11844 65-67 IN denotes in
T11845 68-69 DT denotes a
T11846 70-84 JJ denotes dose-dependent
T11847 85-91 NN denotes manner
T11848 92-94 IN denotes by
T11849 95-104 JJ denotes wild-type
T11850 105-108 NN denotes Tat
T11851 108-109 -COMMA- denotes ,
T11852 110-113 CC denotes and
T11853 114-117 RB denotes not
T11854 118-120 IN denotes by
T11855 121-124 NN denotes Tat
T11856 125-126 NN denotes R
T11857 126-127 -LRB- denotes (
T11858 127-132 CD denotes 49–57
T11859 132-133 -RRB- denotes )
T11860 134-135 -LRB- denotes (
T11861 135-141 NN denotes Figure
T11862 142-144 NN denotes 3D
T11863 144-145 -RRB- denotes )
R9679 T11837 T11833 arg1Of activity,The
R9680 T11837 T11834 arg1Of activity,p65
R9681 T11837 T11835 arg1Of activity,DNA
R9682 T11837 T11836 arg1Of activity,binding
R9683 T11837 T11838 arg1Of activity,was
R9684 T11837 T11839 arg2Of activity,inhibited
R9685 T11837 T11843 arg2Of activity,restored
R9686 T11839 T11842 arg1Of inhibited,and
R9687 T11841 T11839 arg1Of IκB-α,inhibited
R9688 T11841 T11840 arg2Of IκB-α,by
R9689 T11842 T11838 arg2Of and,was
R9690 T11843 T11842 arg2Of restored,and
R9691 T11843 T11844 arg1Of restored,in
R9692 T11843 T11848 arg1Of restored,by
R9693 T11843 T11854 arg1Of restored,by
R9694 T11847 T11844 arg2Of manner,in
R9695 T11847 T11845 arg1Of manner,a
R9696 T11847 T11846 arg1Of manner,dose-dependent
R9697 T11848 T11852 arg1Of by,and
R9698 T11850 T11848 arg2Of Tat,by
R9699 T11850 T11849 arg1Of Tat,wild-type
R9700 T11852 T11851 arg1Of and,","
R9701 T11854 T11852 arg2Of by,and
R9702 T11854 T11853 arg1Of by,not
R9703 T11856 T11854 arg2Of R,by
R9704 T11856 T11855 arg1Of R,Tat
R9705 T11856 T11857 arg1Of R,(
R9706 T11856 T11860 arg1Of R,(
R9707 T11858 T11857 arg2Of 49–57,(
R9708 T11859 T11857 arg3Of ),(
R9709 T11862 T11860 arg2Of 3D,(
R9710 T11862 T11861 arg1Of 3D,Figure
R9711 T11863 T11860 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12308 0-3 DT denotes The
T12309 4-7 CD denotes p65
T12310 8-11 NNP denotes DNA
T12311 12-19 JJ denotes binding
T12312 20-28 NN denotes activity
T12313 29-32 VBD denotes was
T12314 33-42 VBN denotes inhibited
T12315 43-45 IN denotes by
T12316 46-51 NNP denotes IκB-α
T12317 52-55 CC denotes and
T12318 56-64 VBN denotes restored
T12319 65-67 IN denotes in
T12320 68-69 DT denotes a
T12321 70-84 JJ denotes dose-dependent
T12322 85-91 NN denotes manner
T12323 92-94 IN denotes by
T12324 95-104 JJ denotes wild-type
T12325 105-108 NNP denotes Tat
T12326 108-109 , denotes ,
T12327 110-113 CC denotes and
T12328 114-117 RB denotes not
T12329 118-120 IN denotes by
T12330 121-124 NNP denotes Tat
T12331 125-126 NNP denotes R
T12332 126-127 -LRB- denotes (
T12333 127-129 CD denotes 49
T12334 130-132 CD denotes 57
T12335 132-133 -RRB- denotes )
T12336 134-135 -LRB- denotes (
T12337 135-141 NNP denotes Figure
T12338 142-144 NNP denotes 3D
T12339 144-145 -RRB- denotes )
T12340 145-146 . denotes .
R10048 T12308 T12312 det The,activity
R10049 T12309 T12310 nummod p65,DNA
R10050 T12310 T12312 nmod DNA,activity
R10051 T12311 T12312 amod binding,activity
R10052 T12312 T12314 nsubjpass activity,inhibited
R10053 T12313 T12314 auxpass was,inhibited
R10054 T12314 T12314 ROOT inhibited,inhibited
R10055 T12315 T12314 agent by,inhibited
R10056 T12316 T12315 pobj IκB-α,by
R10057 T12317 T12314 cc and,inhibited
R10058 T12318 T12314 conj restored,inhibited
R10059 T12319 T12318 prep in,restored
R10060 T12320 T12322 det a,manner
R10061 T12321 T12322 amod dose-dependent,manner
R10062 T12322 T12319 pobj manner,in
R10063 T12323 T12318 agent by,restored
R10064 T12324 T12325 amod wild-type,Tat
R10065 T12325 T12323 pobj Tat,by
R10066 T12326 T12318 punct ",",restored
R10067 T12327 T12314 cc and,inhibited
R10068 T12328 T12329 neg not,by
R10069 T12329 T12314 conj by,inhibited
R10070 T12330 T12331 compound Tat,R
R10071 T12331 T12329 pobj R,by
R10072 T12332 T12331 punct (,R
R10073 T12333 T12331 appos 49,R
R10074 T12334 T12331 appos 57,R
R10075 T12335 T12331 punct ),R
R10076 T12336 T12338 punct (,3D
R10077 T12337 T12338 compound Figure,3D
R10078 T12338 T12331 appos 3D,R
R10079 T12339 T12329 punct ),by
R10080 T12340 T12314 punct .,inhibited

GO-MF

Id Subject Object Predicate Lexical cue
T12473 12-19 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T12477 8-19 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding

sentences

Id Subject Object Predicate Lexical cue
T11610 0-146 Sentence denotes The p65 DNA binding activity was inhibited by IκB-α and restored in a dose-dependent manner by wild-type Tat, and not by Tat R(49–57) (Figure 3D).
T161 0-146 Sentence denotes The p65 DNA binding activity was inhibited by IκB-α and restored in a dose-dependent manner by wild-type Tat, and not by Tat R(49–57) (Figure 3D).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T12961 4-7 Protein denotes p65
T12962 12-19 Binding denotes binding
T12963 33-42 Negative_regulation denotes inhibited
T12964 46-51 Protein denotes IκB-α
T12965 56-64 Negative_regulation denotes restored true
T12966 56-64 Negative_regulation denotes restored true
T12967 105-108 Protein denotes Tat
T12968 121-133 Protein denotes Tat R(49–57)
R10526 T12961 T12962 themeOf p65,binding
R10527 T12962 T12963 themeOf binding,inhibited
R10528 T12963 T12966 themeOf inhibited,restored
R10529 T12963 T12965 themeOf inhibited,restored
R10530 T12964 T12963 causeOf IκB-α,inhibited
R10531 T12967 T12966 causeOf Tat,restored
R10532 T12968 T12965 causeOf Tat R(49–57),restored

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T13043 4-11 Protein denotes p65 DNA
T13044 46-51 Protein denotes IκB-α
T13045 121-126 Protein denotes Tat R
T13046 12-19 Binding denotes binding
T13047 33-42 Negative_regulation denotes inhibited
T13048 56-64 Positive_regulation denotes restored
T13049 56-64 Positive_regulation denotes restored
R10578 T13043 T13046 themeOf p65 DNA,binding
R10579 T13043 T13048 themeOf p65 DNA,restored
R10580 T13044 T13047 causeOf IκB-α,inhibited
R10581 T13045 T13048 causeOf Tat R,restored
R10582 T13045 T13049 causeOf Tat R,restored
R10583 T13046 T13047 themeOf binding,inhibited
R10584 T13046 T13049 themeOf binding,restored

test2

Id Subject Object Predicate Lexical cue
T11467 4-7 Protein denotes p65
T11468 12-19 Binding denotes binding
T11469 33-42 Negative_regulation denotes inhibited
T11470 46-51 Protein denotes IκB-α
T11471 75-84 Regulation denotes dependent
T11472 105-108 Protein denotes Tat
T11473 121-133 Protein denotes Tat R(49–57)
R9358 T11467 T11468 themeOf p65,binding
R9359 T11468 T11469 themeOf binding,inhibited
R9360 T11470 T11469 causeOf IκB-α,inhibited
R9361 T11472 T11469 causeOf Tat,inhibited
R9362 T11473 T11469 causeOf Tat R(49–57),inhibited

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T11563 4-7 Protein denotes p65
T11564 12-19 Binding denotes binding
T11565 33-42 Negative_regulation denotes inhibited
T11566 46-51 Protein denotes IκB-α
T11567 56-64 Negative_regulation denotes restored true
T11568 56-64 Negative_regulation denotes restored true
T11569 105-108 Protein denotes Tat
T11570 121-133 Protein denotes Tat R(49–57)
R9431 T11563 T11564 themeOf p65,binding
R9432 T11564 T11565 themeOf binding,inhibited
R9433 T11565 T11568 themeOf inhibited,restored
R9434 T11565 T11567 themeOf inhibited,restored
R9435 T11566 T11565 causeOf IκB-α,inhibited
R9436 T11569 T11568 causeOf Tat,restored
R9437 T11570 T11567 causeOf Tat R(49–57),restored

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12033 4-7 P21579 denotes p65
T12034 4-7 Q04206 denotes p65
T12035 105-108 P04608 denotes Tat
T12036 105-108 Q8UMQ1 denotes Tat
T12037 105-108 P04610 denotes Tat
T12038 105-108 P04605 denotes Tat
T12039 121-124 P04608 denotes Tat
T12040 121-124 Q8UMQ1 denotes Tat
T12041 121-124 P04610 denotes Tat
T12042 121-124 P04605 denotes Tat