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PMC:3333881 / 11431-11681 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7018 0-5 JJ denotes Total
T7019 6-9 NN denotes RNA
T7020 10-13 VB denotes was
T7021 14-23 VB denotes extracted
T7022 24-28 IN denotes from
T7023 29-34 NN denotes cells
T7024 35-37 IN denotes by
T7025 38-43 VB denotes using
T7026 44-47 DT denotes the
T7027 48-54 NN denotes TRIzol
T7028 55-62 NN denotes reagent
T7029 63-64 -LRB- denotes (
T7030 64-74 NN denotes Invitrogen
T7031 74-75 -RRB- denotes )
T7032 75-76 -COLON- denotes ;
T7033 77-80 NN denotes RNA
T7034 81-89 NN denotes aliquots
T7035 90-91 -LRB- denotes (
T7036 91-97 NN denotes 200 ng
T7037 97-98 -RRB- denotes )
T7038 99-103 VB denotes were
T7039 104-111 JJ denotes reverse
T7040 112-123 VB denotes transcribed
T7041 124-129 VB denotes using
T7042 130-136 NNP denotes Random
T7043 137-144 NNP denotes Examers
T7044 145-146 -LRB- denotes (
T7045 146-151 NNP denotes Roche
T7046 151-152 -RRB- denotes )
T7047 153-156 CC denotes and
T7048 157-168 NN denotes Superscript
T7049 169-172 CD denotes III
T7050 173-180 JJ denotes Reverse
T7051 181-194 NN denotes Transcriptase
T7052 195-196 -LRB- denotes (
T7053 196-206 NN denotes Invitrogen
T7054 206-207 -RRB- denotes )
T7055 207-208 -COMMA- denotes ,
T7056 209-218 VB denotes according
T7057 219-221 TO denotes to
T7058 222-225 DT denotes the
T7059 226-238 NN denotes manufacturer
T7060 238-240 POS denotes 's
T7061 241-249 NN denotes protocol
R5900 T7019 T7018 arg1Of RNA,Total
R5901 T7019 T7020 arg1Of RNA,was
R5902 T7019 T7021 arg2Of RNA,extracted
R5903 T7019 T7025 arg1Of RNA,using
R5904 T7021 T7020 arg2Of extracted,was
R5905 T7021 T7022 arg1Of extracted,from
R5906 T7021 T7024 arg1Of extracted,by
R5907 T7021 T7032 arg1Of extracted,;
R5908 T7023 T7022 arg2Of cells,from
R5909 T7025 T7024 arg2Of using,by
R5910 T7028 T7025 arg2Of reagent,using
R5911 T7028 T7026 arg1Of reagent,the
R5912 T7028 T7027 arg1Of reagent,TRIzol
R5913 T7028 T7029 arg1Of reagent,(
R5914 T7030 T7029 arg2Of Invitrogen,(
R5915 T7031 T7029 arg3Of ),(
R5916 T7034 T7033 arg1Of aliquots,RNA
R5917 T7034 T7035 arg1Of aliquots,(
R5918 T7034 T7038 arg1Of aliquots,were
R5919 T7036 T7035 arg2Of 200 ng,(
R5920 T7037 T7035 arg3Of ),(
R5921 T7038 T7032 arg2Of were,;
R5922 T7038 T7055 arg1Of were,","
R5923 T7038 T7056 arg1Of were,according
R5924 T7043 T7039 arg1Of Examers,reverse
R5925 T7043 T7040 arg2Of Examers,transcribed
R5926 T7043 T7041 arg1Of Examers,using
R5927 T7043 T7042 arg1Of Examers,Random
R5928 T7043 T7044 arg1Of Examers,(
R5929 T7043 T7047 arg1Of Examers,and
R5930 T7045 T7044 arg2Of Roche,(
R5931 T7046 T7044 arg3Of ),(
R5932 T7047 T7038 arg2Of and,were
R5933 T7051 T7047 arg2Of Transcriptase,and
R5934 T7051 T7048 arg1Of Transcriptase,Superscript
R5935 T7051 T7049 arg1Of Transcriptase,III
R5936 T7051 T7050 arg1Of Transcriptase,Reverse
R5937 T7051 T7052 arg1Of Transcriptase,(
R5938 T7053 T7052 arg2Of Invitrogen,(
R5939 T7054 T7052 arg3Of ),(
R5940 T7057 T7056 arg2Of to,according
R5941 T7059 T7058 arg1Of manufacturer,the
R5942 T7059 T7060 arg2Of manufacturer,'s
R5943 T7061 T7057 arg2Of protocol,to
R5944 T7061 T7060 arg1Of protocol,'s

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7203 0-5 NNP denotes Total
T7204 6-9 NNP denotes RNA
T7205 10-13 VBD denotes was
T7206 14-23 VBN denotes extracted
T7207 24-28 IN denotes from
T7208 29-34 NNS denotes cells
T7209 35-37 IN denotes by
T7210 38-43 VBG denotes using
T7211 44-47 DT denotes the
T7212 48-54 NNP denotes TRIzol
T7213 55-62 NN denotes reagent
T7214 63-64 -LRB- denotes (
T7215 64-74 NNP denotes Invitrogen
T7216 74-75 -RRB- denotes )
T7217 75-76 : denotes ;
T7218 77-80 NNP denotes RNA
T7219 81-89 NNS denotes aliquots
T7220 90-91 -LRB- denotes (
T7221 91-94 CD denotes 200
T7222 95-97 NN denotes ng
T7223 97-98 -RRB- denotes )
T7224 99-103 VBD denotes were
T7225 104-111 RB denotes reverse
T7226 112-123 VBN denotes transcribed
T7227 124-129 VBG denotes using
T7228 130-136 NNP denotes Random
T7229 137-144 NNP denotes Examers
T7230 145-146 -LRB- denotes (
T7231 146-151 NNP denotes Roche
T7232 151-152 -RRB- denotes )
T7233 153-156 CC denotes and
T7234 157-168 NNP denotes Superscript
T7235 169-172 NNP denotes III
T7236 173-180 VB denotes Reverse
T7237 181-194 NNP denotes Transcriptase
T7238 195-196 -LRB- denotes (
T7239 196-206 NNP denotes Invitrogen
T7240 206-207 -RRB- denotes )
T7241 207-208 , denotes ,
T7242 209-218 VBG denotes according
T7243 219-221 TO denotes to
T7244 222-225 DT denotes the
T7245 226-238 NN denotes manufacturer
T7246 238-240 POS denotes 's
T7247 241-249 NN denotes protocol
T7248 249-250 . denotes .
R6073 T7203 T7204 compound Total,RNA
R6074 T7204 T7206 nsubjpass RNA,extracted
R6075 T7205 T7206 auxpass was,extracted
R6076 T7206 T7226 ccomp extracted,transcribed
R6077 T7207 T7206 prep from,extracted
R6078 T7208 T7207 pobj cells,from
R6079 T7209 T7206 prep by,extracted
R6080 T7210 T7209 pcomp using,by
R6081 T7211 T7213 det the,reagent
R6082 T7212 T7213 compound TRIzol,reagent
R6083 T7213 T7210 dobj reagent,using
R6084 T7214 T7213 punct (,reagent
R6085 T7215 T7213 appos Invitrogen,reagent
R6086 T7216 T7213 punct ),reagent
R6087 T7217 T7226 punct ;,transcribed
R6088 T7218 T7219 compound RNA,aliquots
R6089 T7219 T7226 nsubjpass aliquots,transcribed
R6090 T7220 T7219 punct (,aliquots
R6091 T7221 T7222 nummod 200,ng
R6092 T7222 T7219 appos ng,aliquots
R6093 T7223 T7219 punct ),aliquots
R6094 T7224 T7226 auxpass were,transcribed
R6095 T7225 T7226 advmod reverse,transcribed
R6096 T7226 T7226 ROOT transcribed,transcribed
R6097 T7227 T7226 advcl using,transcribed
R6098 T7228 T7229 compound Random,Examers
R6099 T7229 T7227 dobj Examers,using
R6100 T7230 T7229 punct (,Examers
R6101 T7231 T7229 appos Roche,Examers
R6102 T7232 T7229 punct ),Examers
R6103 T7233 T7229 cc and,Examers
R6104 T7234 T7235 compound Superscript,III
R6105 T7235 T7229 conj III,Examers
R6106 T7236 T7227 xcomp Reverse,using
R6107 T7237 T7236 npadvmod Transcriptase,Reverse
R6108 T7238 T7237 punct (,Transcriptase
R6109 T7239 T7237 appos Invitrogen,Transcriptase
R6110 T7240 T7237 punct ),Transcriptase
R6111 T7241 T7236 punct ",",Reverse
R6112 T7242 T7226 prep according,transcribed
R6113 T7243 T7242 prep to,according
R6114 T7244 T7245 det the,manufacturer
R6115 T7245 T7247 poss manufacturer,protocol
R6116 T7246 T7245 case 's,manufacturer
R6117 T7247 T7243 pobj protocol,to
R6118 T7248 T7226 punct .,transcribed

GO-BP

Id Subject Object Predicate Lexical cue
T7397 181-194 http://purl.obolibrary.org/obo/GO_0003899 denotes Transcriptase
T7398 181-194 http://purl.obolibrary.org/obo/GO_0003968 denotes Transcriptase
T7399 181-194 http://purl.obolibrary.org/obo/GO_0034062 denotes Transcriptase

GO-MF

Id Subject Object Predicate Lexical cue
T7403 181-194 http://purl.obolibrary.org/obo/GO_0003899 denotes Transcriptase
T7404 181-194 http://purl.obolibrary.org/obo/GO_0003968 denotes Transcriptase
T7405 181-194 http://purl.obolibrary.org/obo/GO_0034062 denotes Transcriptase

GO-CC

Id Subject Object Predicate Lexical cue
T7406 29-34 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7010 0-250 Sentence denotes Total RNA was extracted from cells by using the TRIzol reagent (Invitrogen); RNA aliquots (200 ng) were reverse transcribed using Random Examers (Roche) and Superscript III Reverse Transcriptase (Invitrogen), according to the manufacturer's protocol.
T76 0-250 Sentence denotes Total RNA was extracted from cells by using the TRIzol reagent (Invitrogen); RNA aliquots (200 ng) were reverse transcribed using Random Examers (Roche) and Superscript III Reverse Transcriptase (Invitrogen), according to the manufacturer's protocol.

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T7472 157-194 Protein denotes Superscript III Reverse Transcriptase