PMC:3320587 / 820-1046 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/3320587","sourcedb":"PMC","sourceid":"3320587","source_url":"http://www.ncbi.nlm.nih.gov/pmc/3320587","text":"g site in the viral promoter of R5-tropic HIV-1 subtype B and subtype C molecular clones is required for efficent induction of HIV-1 replication by MTb. Furthermore, silencing by RNAi of key components of the TLR pathway in hu","tracks":[{"project":"pmc-enju-pas","denotations":[{"id":"T336","span":{"begin":221,"end":223},"obj":"IN"},{"id":"T335","span":{"begin":213,"end":220},"obj":"NN"},{"id":"T334","span":{"begin":209,"end":212},"obj":"NN"},{"id":"T333","span":{"begin":205,"end":208},"obj":"DT"},{"id":"T332","span":{"begin":202,"end":204},"obj":"IN"},{"id":"T331","span":{"begin":191,"end":201},"obj":"NN"},{"id":"T330","span":{"begin":187,"end":190},"obj":"JJ"},{"id":"T329","span":{"begin":184,"end":186},"obj":"IN"},{"id":"T328","span":{"begin":179,"end":183},"obj":"NN"},{"id":"T327","span":{"begin":176,"end":178},"obj":"IN"},{"id":"T326","span":{"begin":166,"end":175},"obj":"NN"},{"id":"T325","span":{"begin":164,"end":165},"obj":"-COMMA-"},{"id":"T324","span":{"begin":153,"end":164},"obj":"RB"},{"id":"T323","span":{"begin":148,"end":151},"obj":"NN"},{"id":"T322","span":{"begin":145,"end":147},"obj":"IN"},{"id":"T321","span":{"begin":133,"end":144},"obj":"NN"},{"id":"T320","span":{"begin":127,"end":132},"obj":"NN"},{"id":"T319","span":{"begin":124,"end":126},"obj":"IN"},{"id":"T318","span":{"begin":114,"end":123},"obj":"NN"},{"id":"T317","span":{"begin":105,"end":113},"obj":"JJ"},{"id":"T316","span":{"begin":101,"end":104},"obj":"IN"},{"id":"T315","span":{"begin":92,"end":100},"obj":"VB"},{"id":"T314","span":{"begin":89,"end":91},"obj":"VB"},{"id":"T313","span":{"begin":82,"end":88},"obj":"NN"},{"id":"T312","span":{"begin":72,"end":81},"obj":"JJ"},{"id":"T311","span":{"begin":70,"end":71},"obj":"NN"},{"id":"T310","span":{"begin":62,"end":69},"obj":"NN"},{"id":"T309","span":{"begin":58,"end":61},"obj":"CC"},{"id":"T308","span":{"begin":56,"end":57},"obj":"NN"},{"id":"T307","span":{"begin":48,"end":55},"obj":"NN"},{"id":"T306","span":{"begin":42,"end":47},"obj":"NN"},{"id":"T305","span":{"begin":32,"end":41},"obj":"JJ"},{"id":"T304","span":{"begin":29,"end":31},"obj":"IN"},{"id":"T303","span":{"begin":20,"end":28},"obj":"NN"},{"id":"T302","span":{"begin":14,"end":19},"obj":"JJ"},{"id":"T301","span":{"begin":10,"end":13},"obj":"DT"},{"id":"T300","span":{"begin":7,"end":9},"obj":"IN"},{"id":"T299","span":{"begin":2,"end":6},"obj":"NN"}],"relations":[{"id":"R128","pred":"arg1Of","subj":"T299","obj":"T300"},{"id":"R129","pred":"arg1Of","subj":"T299","obj":"T314"},{"id":"R130","pred":"arg2Of","subj":"T299","obj":"T315"},{"id":"R131","pred":"arg2Of","subj":"T303","obj":"T300"},{"id":"R132","pred":"arg1Of","subj":"T303","obj":"T301"},{"id":"R133","pred":"arg1Of","subj":"T303","obj":"T302"},{"id":"R134","pred":"arg1Of","subj":"T303","obj":"T304"},{"id":"R135","pred":"arg1Of","subj":"T308","obj":"T309"},{"id":"R136","pred":"arg2Of","subj":"T310","obj":"T309"},{"id":"R137","pred":"arg2Of","subj":"T313","obj":"T304"},{"id":"R138","pred":"arg1Of","subj":"T313","obj":"T305"},{"id":"R139","pred":"arg1Of","subj":"T313","obj":"T306"},{"id":"R140","pred":"arg1Of","subj":"T313","obj":"T307"},{"id":"R141","pred":"arg1Of","subj":"T313","obj":"T308"},{"id":"R142","pred":"arg1Of","subj":"T313","obj":"T310"},{"id":"R143","pred":"arg1Of","subj":"T313","obj":"T311"},{"id":"R144","pred":"arg1Of","subj":"T313","obj":"T312"},{"id":"R146","pred":"arg2Of","subj":"T315","obj":"T314"},{"id":"R147","pred":"arg1Of","subj":"T315","obj":"T316"},{"id":"R148","pred":"arg2Of","subj":"T318","obj":"T316"},{"id":"R149","pred":"arg1Of","subj":"T318","obj":"T317"},{"id":"R150","pred":"arg1Of","subj":"T318","obj":"T319"},{"id":"R151","pred":"arg1Of","subj":"T318","obj":"T322"},{"id":"R152","pred":"arg2Of","subj":"T321","obj":"T319"},{"id":"R153","pred":"arg1Of","subj":"T321","obj":"T320"},{"id":"R154","pred":"arg2Of","subj":"T323","obj":"T322"},{"id":"R155","pred":"arg1Of","subj":"T326","obj":"T327"},{"id":"R156","pred":"arg1Of","subj":"T326","obj":"T329"},{"id":"R158","pred":"arg2Of","subj":"T328","obj":"T327"},{"id":"R159","pred":"arg2Of","subj":"T331","obj":"T329"},{"id":"R160","pred":"arg1Of","subj":"T331","obj":"T330"},{"id":"R161","pred":"arg1Of","subj":"T331","obj":"T332"},{"id":"R162","pred":"arg2Of","subj":"T335","obj":"T332"},{"id":"R163","pred":"arg1Of","subj":"T335","obj":"T333"},{"id":"R164","pred":"arg1Of","subj":"T335","obj":"T334"},{"id":"R165","pred":"arg1Of","subj":"T335","obj":"T336"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"attributes":[{"subj":"T336","pred":"source","obj":"pmc-enju-pas"},{"subj":"T335","pred":"source","obj":"pmc-enju-pas"},{"subj":"T334","pred":"source","obj":"pmc-enju-pas"},{"subj":"T333","pred":"source","obj":"pmc-enju-pas"},{"subj":"T332","pred":"source","obj":"pmc-enju-pas"},{"subj":"T331","pred":"source","obj":"pmc-enju-pas"},{"subj":"T330","pred":"source","obj":"pmc-enju-pas"},{"subj":"T329","pred":"source","obj":"pmc-enju-pas"},{"subj":"T328","pred":"source","obj":"pmc-enju-pas"},{"subj":"T327","pred":"source","obj":"pmc-enju-pas"},{"subj":"T326","pred":"source","obj":"pmc-enju-pas"},{"subj":"T325","pred":"source","obj":"pmc-enju-pas"},{"subj":"T324","pred":"source","obj":"pmc-enju-pas"},{"subj":"T323","pred":"source","obj":"pmc-enju-pas"},{"subj":"T322","pred":"source","obj":"pmc-enju-pas"},{"subj":"T321","pred":"source","obj":"pmc-enju-pas"},{"subj":"T320","pred":"source","obj":"pmc-enju-pas"},{"subj":"T319","pred":"source","obj":"pmc-enju-pas"},{"subj":"T318","pred":"source","obj":"pmc-enju-pas"},{"subj":"T317","pred":"source","obj":"pmc-enju-pas"},{"subj":"T316","pred":"source","obj":"pmc-enju-pas"},{"subj":"T315","pred":"source","obj":"pmc-enju-pas"},{"subj":"T314","pred":"source","obj":"pmc-enju-pas"},{"subj":"T313","pred":"source","obj":"pmc-enju-pas"},{"subj":"T312","pred":"source","obj":"pmc-enju-pas"},{"subj":"T311","pred":"source","obj":"pmc-enju-pas"},{"subj":"T310","pred":"source","obj":"pmc-enju-pas"},{"subj":"T309","pred":"source","obj":"pmc-enju-pas"},{"subj":"T308","pred":"source","obj":"pmc-enju-pas"},{"subj":"T307","pred":"source","obj":"pmc-enju-pas"},{"subj":"T306","pred":"source","obj":"pmc-enju-pas"},{"subj":"T305","pred":"source","obj":"pmc-enju-pas"},{"subj":"T304","pred":"source","obj":"pmc-enju-pas"},{"subj":"T303","pred":"source","obj":"pmc-enju-pas"},{"subj":"T302","pred":"source","obj":"pmc-enju-pas"},{"subj":"T301","pred":"source","obj":"pmc-enju-pas"},{"subj":"T300","pred":"source","obj":"pmc-enju-pas"},{"subj":"T299","pred":"source","obj":"pmc-enju-pas"}]},{"project":"GO-BP","denotations":[{"id":"T105","span":{"begin":179,"end":183},"obj":"http://purl.obolibrary.org/obo/GO_0016246"}],"attributes":[{"subj":"T105","pred":"source","obj":"GO-BP"}]},{"project":"BioNLP16_DUT","denotations":[{"id":"T771","span":{"begin":166,"end":175},"obj":"Negative_regulation"}],"attributes":[{"subj":"T771","pred":"source","obj":"BioNLP16_DUT"}]},{"project":"BioNLP16_Messiy","denotations":[{"id":"T456","span":{"begin":92,"end":100},"obj":"Positive_regulation"},{"id":"T457","span":{"begin":114,"end":123},"obj":"Positive_regulation"}],"relations":[{"id":"R519","pred":"themeOf","subj":"T457","obj":"T456"}],"attributes":[{"subj":"T456","pred":"source","obj":"BioNLP16_Messiy"},{"subj":"T457","pred":"source","obj":"BioNLP16_Messiy"}]},{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T782","span":{"begin":10,"end":55},"obj":"Entity"},{"id":"T787","span":{"begin":145,"end":151},"obj":"Protein"}],"attributes":[{"subj":"T782","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T787","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"}]},{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T647","span":{"begin":56,"end":57},"obj":"NNP"},{"id":"T646","span":{"begin":48,"end":55},"obj":"NN"},{"id":"T645","span":{"begin":42,"end":47},"obj":"NN"},{"id":"T644","span":{"begin":32,"end":41},"obj":"JJ"},{"id":"T643","span":{"begin":29,"end":31},"obj":"IN"},{"id":"T642","span":{"begin":20,"end":28},"obj":"NN"},{"id":"T641","span":{"begin":14,"end":19},"obj":"JJ"},{"id":"T640","span":{"begin":10,"end":13},"obj":"DT"},{"id":"T639","span":{"begin":7,"end":9},"obj":"IN"},{"id":"T638","span":{"begin":2,"end":6},"obj":"NN"},{"id":"T648","span":{"begin":58,"end":61},"obj":"CC"},{"id":"T649","span":{"begin":62,"end":69},"obj":"JJ"},{"id":"T650","span":{"begin":70,"end":71},"obj":"NNP"},{"id":"T651","span":{"begin":72,"end":81},"obj":"JJ"},{"id":"T652","span":{"begin":82,"end":88},"obj":"NNS"},{"id":"T653","span":{"begin":89,"end":91},"obj":"VBZ"},{"id":"T654","span":{"begin":92,"end":100},"obj":"VBN"},{"id":"T655","span":{"begin":101,"end":104},"obj":"IN"},{"id":"T656","span":{"begin":105,"end":113},"obj":"JJ"},{"id":"T657","span":{"begin":114,"end":123},"obj":"NN"},{"id":"T658","span":{"begin":124,"end":126},"obj":"IN"},{"id":"T659","span":{"begin":127,"end":132},"obj":"JJ"},{"id":"T660","span":{"begin":133,"end":144},"obj":"NN"},{"id":"T661","span":{"begin":145,"end":147},"obj":"IN"},{"id":"T662","span":{"begin":148,"end":151},"obj":"NNP"},{"id":"T663","span":{"begin":151,"end":152},"obj":"."},{"id":"T664","span":{"begin":153,"end":164},"obj":"RB"},{"id":"T665","span":{"begin":164,"end":165},"obj":","},{"id":"T666","span":{"begin":166,"end":175},"obj":"VBG"},{"id":"T667","span":{"begin":176,"end":178},"obj":"IN"},{"id":"T668","span":{"begin":179,"end":183},"obj":"NNS"},{"id":"T669","span":{"begin":184,"end":186},"obj":"IN"},{"id":"T670","span":{"begin":187,"end":190},"obj":"JJ"},{"id":"T671","span":{"begin":191,"end":201},"obj":"NNS"},{"id":"T672","span":{"begin":202,"end":204},"obj":"IN"},{"id":"T673","span":{"begin":205,"end":208},"obj":"DT"},{"id":"T674","span":{"begin":209,"end":212},"obj":"NNP"},{"id":"T675","span":{"begin":213,"end":220},"obj":"NN"},{"id":"T676","span":{"begin":221,"end":223},"obj":"IN"}],"relations":[{"id":"R372","pred":"nsubjpass","subj":"T638","obj":"T654"},{"id":"R373","pred":"prep","subj":"T639","obj":"T638"},{"id":"R374","pred":"det","subj":"T640","obj":"T642"},{"id":"R375","pred":"amod","subj":"T641","obj":"T642"},{"id":"R376","pred":"pobj","subj":"T642","obj":"T639"},{"id":"R377","pred":"prep","subj":"T643","obj":"T642"},{"id":"R378","pred":"nmod","subj":"T644","obj":"T647"},{"id":"R379","pred":"nmod","subj":"T645","obj":"T647"},{"id":"R380","pred":"compound","subj":"T646","obj":"T647"},{"id":"R381","pred":"nmod","subj":"T647","obj":"T652"},{"id":"R546","pred":"cc","subj":"T648","obj":"T647"},{"id":"R547","pred":"amod","subj":"T649","obj":"T652"},{"id":"R548","pred":"nmod","subj":"T650","obj":"T652"},{"id":"R549","pred":"amod","subj":"T651","obj":"T652"},{"id":"R550","pred":"pobj","subj":"T652","obj":"T643"},{"id":"R551","pred":"auxpass","subj":"T653","obj":"T654"},{"id":"R553","pred":"prep","subj":"T655","obj":"T654"},{"id":"R554","pred":"amod","subj":"T656","obj":"T657"},{"id":"R555","pred":"pobj","subj":"T657","obj":"T655"},{"id":"R556","pred":"prep","subj":"T658","obj":"T657"},{"id":"R557","pred":"compound","subj":"T659","obj":"T660"},{"id":"R558","pred":"pobj","subj":"T660","obj":"T658"},{"id":"R559","pred":"prep","subj":"T661","obj":"T657"},{"id":"R560","pred":"pobj","subj":"T662","obj":"T661"},{"id":"R565","pred":"prep","subj":"T667","obj":"T666"},{"id":"R566","pred":"pobj","subj":"T668","obj":"T667"},{"id":"R567","pred":"prep","subj":"T669","obj":"T668"},{"id":"R568","pred":"amod","subj":"T670","obj":"T671"},{"id":"R569","pred":"pobj","subj":"T671","obj":"T669"},{"id":"R570","pred":"prep","subj":"T672","obj":"T671"},{"id":"R571","pred":"det","subj":"T673","obj":"T675"},{"id":"R572","pred":"compound","subj":"T674","obj":"T675"},{"id":"R573","pred":"pobj","subj":"T675","obj":"T672"},{"id":"R574","pred":"prep","subj":"T676","obj":"T675"}],"attributes":[{"subj":"T647","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T646","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T645","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T644","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T643","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T642","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T641","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T640","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T639","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T638","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T648","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T649","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T650","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T651","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T652","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T653","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T654","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T655","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T656","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T657","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T658","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T659","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T660","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T661","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T662","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T663","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T664","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T665","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T666","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T667","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T668","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T669","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T670","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T671","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T672","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T673","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T674","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T675","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T676","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"}]},{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T143","span":{"begin":166,"end":175},"obj":"Negative_regulation"},{"id":"T142","span":{"begin":166,"end":175},"obj":"Negative_regulation"},{"id":"T141","span":{"begin":166,"end":175},"obj":"Negative_regulation"},{"id":"T136","span":{"begin":209,"end":212},"obj":"Protein"}],"attributes":[{"subj":"T143","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T142","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T141","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T136","pred":"source","obj":"bionlp-st-ge-2016-test-tees"}]},{"project":"testone","denotations":[{"id":"T25","span":{"begin":166,"end":175},"obj":"Negative_regulation"}],"attributes":[{"subj":"T25","pred":"source","obj":"testone"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"pmc-enju-pas","color":"#ec93dc","default":true},{"id":"GO-BP","color":"#93ece1"},{"id":"BioNLP16_DUT","color":"#ecc793"},{"id":"BioNLP16_Messiy","color":"#ad93ec"},{"id":"bionlp-st-ge-2016-test-ihmc","color":"#93ec93"},{"id":"bionlp-st-ge-2016-spacy-parsed","color":"#ec93ac"},{"id":"bionlp-st-ge-2016-test-tees","color":"#93c6ec"},{"id":"testone","color":"#e0ec93"}]}]}}