PMC:3320587 / 2648-3164
Annnotations
2_test
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pmc-enju-pas
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with human immunodeficiency virus type 1 (HIV-1) [1], [2]. Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]). Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6]. Activa"}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T979","span":{"begin":405,"end":408},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":" with human immunodeficiency virus type 1 (HIV-1) [1], [2]. Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]). Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6]. Activa"}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T1772","span":{"begin":405,"end":408},"obj":"http://www.uniprot.org/uniprot/P01730"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":" with human immunodeficiency virus type 1 (HIV-1) [1], [2]. Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]). Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6]. Activa"}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T1012","span":{"begin":364,"end":392},"obj":"http://purl.obolibrary.org/obo/GO_1904515"},{"id":"T1011","span":{"begin":330,"end":346},"obj":"http://purl.obolibrary.org/obo/GO_0075136"},{"id":"T1007","span":{"begin":202,"end":215},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T1006","span":{"begin":373,"end":392},"obj":"http://purl.obolibrary.org/obo/GO_0007165"},{"id":"T1005","span":{"begin":162,"end":180},"obj":"http://purl.obolibrary.org/obo/GO_0007165"},{"id":"T1003","span":{"begin":162,"end":171},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T1002","span":{"begin":364,"end":392},"obj":"http://purl.obolibrary.org/obo/GO_1903572"},{"id":"T1001","span":{"begin":152,"end":180},"obj":"http://purl.obolibrary.org/obo/GO_1903572"},{"id":"T1000","span":{"begin":364,"end":401},"obj":"http://purl.obolibrary.org/obo/GO_1902533"},{"id":"T999","span":{"begin":152,"end":180},"obj":"http://purl.obolibrary.org/obo/GO_1902533"},{"id":"T1016","span":{"begin":364,"end":401},"obj":"http://purl.obolibrary.org/obo/GO_0038007"},{"id":"T1015","span":{"begin":364,"end":392},"obj":"http://purl.obolibrary.org/obo/GO_1902849"},{"id":"T1014","span":{"begin":364,"end":392},"obj":"http://purl.obolibrary.org/obo/GO_0009967"},{"id":"T1013","span":{"begin":364,"end":392},"obj":"http://purl.obolibrary.org/obo/GO_1904263"},{"id":"T1021","span":{"begin":380,"end":392},"obj":"http://purl.obolibrary.org/obo/GO_0009293"},{"id":"T1020","span":{"begin":373,"end":401},"obj":"http://purl.obolibrary.org/obo/GO_0035556"},{"id":"T1019","span":{"begin":373,"end":401},"obj":"http://purl.obolibrary.org/obo/GO_0036499"},{"id":"T1018","span":{"begin":373,"end":401},"obj":"http://purl.obolibrary.org/obo/GO_0036500"},{"id":"T1017","span":{"begin":373,"end":401},"obj":"http://purl.obolibrary.org/obo/GO_0036498"}],"text":" with human immunodeficiency virus type 1 (HIV-1) [1], [2]. Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]). Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6]. Activa"}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T1049","span":{"begin":431,"end":436},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1048","span":{"begin":411,"end":416},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1047","span":{"begin":330,"end":334},"obj":"http://purl.obolibrary.org/obo/GO_0018995"}],"text":" with human immunodeficiency virus type 1 (HIV-1) [1], [2]. Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]). Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6]. Activa"}
sentences
{"project":"sentences","denotations":[{"id":"T927","span":{"begin":257,"end":509},"obj":"Sentence"},{"id":"T926","span":{"begin":60,"end":256},"obj":"Sentence"},{"id":"T18","span":{"begin":60,"end":256},"obj":"Sentence"},{"id":"T19","span":{"begin":257,"end":509},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":" with human immunodeficiency virus type 1 (HIV-1) [1], [2]. Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]). Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6]. Activa"}
ICD10
{"project":"ICD10","denotations":[{"id":"T1037","span":{"begin":12,"end":28},"obj":"http://purl.bioontology.org/ontology/ICD10/D84.9"}],"text":" with human immunodeficiency virus type 1 (HIV-1) [1], [2]. Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]). Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6]. Activa"}
simple1
{"project":"simple1","denotations":[{"id":"T1073","span":{"begin":405,"end":408},"obj":"Protein"}],"text":" with human immunodeficiency virus type 1 (HIV-1) [1], [2]. Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]). Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6]. Activa"}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T2667","span":{"begin":405,"end":408},"obj":"Protein"}],"text":" with human immunodeficiency virus type 1 (HIV-1) [1], [2]. Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]). Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6]. Activa"}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T1846","span":{"begin":405,"end":408},"obj":"Protein"}],"text":" with human immunodeficiency virus type 1 (HIV-1) [1], [2]. Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]). Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6]. Activa"}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T1795","span":{"begin":405,"end":408},"obj":"Protein"}],"text":" with human immunodeficiency virus type 1 (HIV-1) [1], [2]. Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]). Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6]. Activa"}
bionlp-st-ge-2016-test-ihmc
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bionlp-st-ge-2016-spacy-parsed
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bionlp-st-ge-2016-test-tees
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testone
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test3
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