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PMC:3312845 / 4319-4620 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22240205-19567702-63147404 29-31 19567702 denotes 14
22240205-15962509-63147405 32-34 15962509 denotes 15
22240205-3960307-63147406 54-56 3960307 denotes 16

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1692 56-57 -RRB- denotes ]
T1691 54-56 CD denotes 16
T1690 53-54 -LRB- denotes [
T1689 45-52 NNP denotes Sztriha
T1688 43-44 -COMMA- denotes ,
T1687 37-43 RB denotes Indeed
T1686 34-35 -RRB- denotes ]
T1685 29-34 CD denotes 14,15
T1684 28-29 -LRB- denotes [
T1683 15-27 NN denotes excitability
T1682 11-14 CC denotes and
T1681 1-10 NN denotes viability
T1728 296-297 NN denotes T
T1727 292-295 CC denotes and
T1726 280-291 NN denotes macrophages
T1725 270-279 VB denotes activated
T1724 267-269 IN denotes by
T1723 260-266 RB denotes mainly
T1722 251-259 VB denotes produced
T1721 248-250 VB denotes is
T1720 243-247 WDT denotes that
T1719 235-242 NN denotes protein
T1718 231-234 NN denotes kDa
T1717 228-230 CD denotes 17
T1716 226-227 DT denotes a
T1715 223-225 VB denotes is
T1714 221-222 -RRB- denotes )
T1713 216-221 NN denotes TNF-α
T1712 215-216 -LRB- denotes (
T1711 206-214 NN denotes factor-α
T1710 197-205 NN denotes necrosis
T1709 191-196 NN denotes tumor
T1708 189-190 -COMMA- denotes ,
T1707 180-189 NN denotes cytokines
T1706 174-179 IN denotes Among
T1705 165-172 NN denotes seizure
T1704 152-164 JJ denotes acid-induced
T1703 145-151 JJ denotes kainic
T1702 135-144 VB denotes following
T1701 126-134 NN denotes thalamus
T1700 123-125 IN denotes in
T1699 117-122 NN denotes edema
T1698 107-116 JJ denotes vasogenic
T1697 99-106 VB denotes reduces
T1696 86-98 NN denotes pretreatment
T1695 72-85 NN denotes dexamethasone
T1694 67-71 IN denotes that
T1693 58-66 VB denotes reported
R1117 T1681 T1682 arg1Of viability,and
R1119 T1683 T1682 arg2Of excitability,and
R1120 T1683 T1684 arg1Of excitability,[
R1121 T1685 T1684 arg2Of "14,15",[
R1122 T1686 T1684 arg3Of ],[
R1123 T1689 T1690 arg1Of Sztriha,[
R1124 T1689 T1693 arg1Of Sztriha,reported
R1125 T1691 T1690 arg2Of 16,[
R1126 T1692 T1690 arg3Of ],[
R1127 T1693 T1687 arg1Of reported,Indeed
R1128 T1693 T1688 arg1Of reported,","
R1129 T1696 T1695 arg1Of pretreatment,dexamethasone
R1130 T1696 T1697 arg1Of pretreatment,reduces
R1131 T1697 T1693 arg2Of reduces,reported
R1132 T1697 T1694 arg1Of reduces,that
R1133 T1699 T1697 arg2Of edema,reduces
R1134 T1699 T1698 arg1Of edema,vasogenic
R1135 T1699 T1700 arg1Of edema,in
R1136 T1701 T1700 arg2Of thalamus,in
R1137 T1701 T1702 arg1Of thalamus,following
R1138 T1705 T1702 arg2Of seizure,following
R1139 T1705 T1703 arg1Of seizure,kainic
R1140 T1705 T1704 arg1Of seizure,acid-induced
R1141 T1707 T1706 arg2Of cytokines,Among
R1142 T1711 T1709 arg1Of factor-α,tumor
R1143 T1711 T1710 arg1Of factor-α,necrosis
R1144 T1711 T1712 arg1Of factor-α,(
R1145 T1711 T1715 arg1Of factor-α,is
R1146 T1713 T1712 arg2Of TNF-α,(
R1147 T1714 T1712 arg3Of ),(
R1148 T1715 T1706 arg1Of is,Among
R1149 T1715 T1708 arg1Of is,","
R1150 T1719 T1715 arg2Of protein,is
R1151 T1719 T1716 arg1Of protein,a
R1152 T1719 T1717 arg1Of protein,17
R1153 T1719 T1718 arg1Of protein,kDa
R1154 T1719 T1720 arg1Of protein,that
R1155 T1719 T1721 arg1Of protein,is
R1156 T1719 T1722 arg2Of protein,produced
R1157 T1722 T1721 arg2Of produced,is
R1158 T1722 T1723 arg1Of produced,mainly
R1160 T1726 T1725 arg2Of macrophages,activated
R1161 T1726 T1727 arg1Of macrophages,and
R1162 T1727 T1722 arg1Of and,produced
R1163 T1727 T1724 arg2Of and,by

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1197 216-221 Protein denotes TNF-α
T1196 191-214 Protein denotes tumor necrosis factor-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1948 216-219 http://www.uniprot.org/uniprot/P01375 denotes TNF
T1942 213-219 http://www.uniprot.org/uniprot/P01375 denotes α (TNF

GO-BP

Id Subject Object Predicate Lexical cue
T1231 270-291 http://purl.obolibrary.org/obo/GO_0042116 denotes activated macrophages
T1230 197-205 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T1229 197-205 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T1228 197-205 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T1222 197-205 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis

sentences

Id Subject Object Predicate Lexical cue
T1158 37-173 Sentence denotes Indeed, Sztriha [16] reported that dexamethasone pretreatment reduces vasogenic edema in thalamus following kainic acid-induced seizure.
T37 37-173 Sentence denotes Indeed, Sztriha [16] reported that dexamethasone pretreatment reduces vasogenic edema in thalamus following kainic acid-induced seizure.

simple1

Id Subject Object Predicate Lexical cue
T1251 216-221 Protein denotes TNF-α
T1250 191-214 Protein denotes tumor necrosis factor-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2852 251-259 Gene_expression denotes produced
T2831 191-214 Protein denotes tumor necrosis factor-α
T2832 216-221 Protein denotes TNF-α
R2140 T2831 T2852 themeOf tumor necrosis factor-α,produced
R2141 T2832 T2852 themeOf TNF-α,produced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2684 251-259 Gene_expression denotes produced
T2664 216-221 Protein denotes TNF-α
T2663 191-214 Protein denotes tumor necrosis factor-α
R2025 T2663 T2684 themeOf tumor necrosis factor-α,produced

DLUT931

Id Subject Object Predicate Lexical cue
T2715 251-259 Gene_expression denotes produced
T2695 216-221 Protein denotes TNF-α
T2694 191-214 Protein denotes tumor necrosis factor-α
R2059 T2694 T2715 themeOf tumor necrosis factor-α,produced
R2060 T2695 T2715 themeOf TNF-α,produced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2917 191-222 Protein denotes tumor necrosis factor-α (TNF-α)
T2902 145-164 Entity denotes kainic acid-induced
T2900 216-221 Protein denotes TNF-α
T2882 72-85 Entity denotes dexamethasone
T2880 180-189 Protein denotes cytokines
T2870 270-291 Entity denotes activated macrophages

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2441 296-297 NNP denotes T
T2440 292-295 CC denotes and
T2439 280-291 NNS denotes macrophages
T2438 270-279 VBN denotes activated
T2437 267-269 IN denotes by
T2436 260-266 RB denotes mainly
T2435 251-259 VBN denotes produced
T2434 248-250 VBZ denotes is
T2433 243-247 WDT denotes that
T2432 235-242 NN denotes protein
T2431 231-234 NN denotes kDa
T2430 228-230 CD denotes 17
T2429 226-227 DT denotes a
T2428 223-225 VBZ denotes is
T2427 221-222 -RRB- denotes )
T2426 216-221 NNP denotes TNF-α
T2425 215-216 -LRB- denotes (
T2424 206-214 NN denotes factor-α
T2423 197-205 NN denotes necrosis
T2422 191-196 NN denotes tumor
T2421 189-190 , denotes ,
T2420 180-189 NNS denotes cytokines
T2419 174-179 IN denotes Among
T2418 172-173 . denotes .
T2417 165-172 NN denotes seizure
T2416 152-164 JJ denotes acid-induced
T2415 145-151 JJ denotes kainic
T2414 135-144 VBG denotes following
T2413 126-134 NN denotes thalamus
T2412 123-125 IN denotes in
T2411 117-122 NN denotes edema
T2410 107-116 JJ denotes vasogenic
T2409 99-106 VBZ denotes reduces
T2408 86-98 NN denotes pretreatment
T2407 72-85 NN denotes dexamethasone
T2406 67-71 IN denotes that
T2405 58-66 VBD denotes reported
T2404 56-57 NNP denotes ]
T2403 54-56 CD denotes 16
T2402 53-54 NNP denotes [
T2401 45-52 NNP denotes Sztriha
T2400 43-44 , denotes ,
T2399 37-43 RB denotes Indeed
T2398 35-36 . denotes .
T2397 34-35 NNP denotes ]
T2396 29-34 CD denotes 14,15
T2395 28-29 NNP denotes [
T2394 15-27 NN denotes excitability
T2393 11-14 CC denotes and
T2392 1-10 NN denotes viability
R1777 T2393 T2392 cc and,viability
R1779 T2394 T2392 conj excitability,viability
R1780 T2395 T2397 compound [,]
R1782 T2396 T2397 compound "14,15",]
R1786 T2399 T2405 advmod Indeed,reported
R1787 T2400 T2405 punct ",",reported
R1788 T2401 T2402 compound Sztriha,[
R1790 T2402 T2405 nsubj [,reported
R1791 T2403 T2404 nummod 16,]
R1792 T2404 T2402 appos ],[
R1797 T2405 T2405 ROOT reported,reported
R1798 T2406 T2409 mark that,reduces
R1800 T2407 T2408 compound dexamethasone,pretreatment
R1801 T2408 T2409 nsubj pretreatment,reduces
R1803 T2409 T2405 ccomp reduces,reported
R1804 T2410 T2411 amod vasogenic,edema
R1806 T2411 T2409 dobj edema,reduces
R1807 T2412 T2411 prep in,edema
R1808 T2413 T2412 pobj thalamus,in
R1810 T2414 T2411 prep following,edema
R1811 T2415 T2417 amod kainic,seizure
R1812 T2416 T2417 amod acid-induced,seizure
R1814 T2417 T2414 pobj seizure,following
R1815 T2418 T2405 punct .,reported
R1816 T2419 T2428 prep Among,is
R1818 T2420 T2419 pobj cytokines,Among
R1819 T2421 T2420 punct ",",cytokines
R1820 T2422 T2423 compound tumor,necrosis
R1821 T2423 T2424 compound necrosis,factor-α
R1822 T2424 T2420 conj factor-α,cytokines
R1823 T2425 T2426 punct (,TNF-α
R1824 T2426 T2424 appos TNF-α,factor-α
R1826 T2427 T2424 punct ),factor-α
R1827 T2428 T2428 ROOT is,is
R1828 T2429 T2432 det a,protein
R1830 T2430 T2432 nummod 17,protein
R1831 T2431 T2432 compound kDa,protein
R1832 T2432 T2428 nsubj protein,is
R1834 T2433 T2435 nsubjpass that,produced
R1835 T2434 T2435 auxpass is,produced
R1836 T2435 T2432 relcl produced,protein
R1838 T2436 T2435 advmod mainly,produced
R1839 T2437 T2435 agent by,produced
R1841 T2438 T2439 amod activated,macrophages
R1842 T2439 T2437 pobj macrophages,by
R1843 T2440 T2439 cc and,macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2729 251-259 Gene_expression denotes produced
T2728 251-259 Gene_expression denotes produced
T2727 216-221 Protein denotes TNF-α
T2726 191-214 Protein denotes tumor necrosis factor-α
R2093 T2726 T2728 themeOf tumor necrosis factor-α,produced
R2094 T2727 T2729 themeOf TNF-α,produced

testone

Id Subject Object Predicate Lexical cue
T1053 251-259 Gene_expression denotes produced
T1029 216-221 Protein denotes TNF-α
T1028 191-214 Protein denotes tumor necrosis factor-α
R660 T1028 T1053 themeOf tumor necrosis factor-α,produced
R661 T1029 T1028 equivalentTo TNF-α,tumor necrosis factor-α

test3

Id Subject Object Predicate Lexical cue
T1088 251-259 Gene_expression denotes produced
T1087 216-221 Protein denotes TNF-α
T1086 191-214 Protein denotes tumor necrosis factor-α
T1064 216-221 Protein denotes TNF-α
T1063 191-214 Protein denotes tumor necrosis factor-α
R677 T1086 T1088 themeOf tumor necrosis factor-α,produced
R678 T1087 T1086 equivalentTo TNF-α,tumor necrosis factor-α