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PMC:3312845 / 32104-32233 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12533 118-128 NN denotes disruption
T12532 114-117 NN denotes BBB
T12531 99-113 JJ denotes TNF-α-mediated
T12530 96-98 IN denotes in
T12529 87-95 VB denotes involved
T12528 84-86 VB denotes be
T12527 80-83 MD denotes may
T12526 64-79 NN denotes phosphorylation
T12525 53-63 NN denotes p65-Ser311
T12524 49-52 CC denotes and
T12523 38-48 NN denotes p65-Ser276
T12522 29-37 VB denotes enhanced
T12521 24-28 IN denotes that
T12520 17-23 JJ denotes likely
T12519 14-16 VB denotes is
T12518 11-13 PRP denotes it
T12517 9-10 -COMMA- denotes ,
T12516 0-9 RB denotes Therefore
R9767 T12518 T12519 arg1Of it,is
R9768 T12518 T12520 arg1Of it,likely
R9769 T12519 T12516 arg1Of is,Therefore
R9770 T12519 T12517 arg1Of is,","
R9771 T12520 T12519 arg2Of likely,is
R9772 T12523 T12522 arg2Of p65-Ser276,enhanced
R9773 T12523 T12524 arg1Of p65-Ser276,and
R9774 T12524 T12527 arg1Of and,may
R9775 T12524 T12528 arg1Of and,be
R9776 T12524 T12529 arg2Of and,involved
R9777 T12526 T12524 arg2Of phosphorylation,and
R9778 T12526 T12525 arg1Of phosphorylation,p65-Ser311
R9779 T12529 T12520 arg2Of involved,likely
R9780 T12529 T12521 arg1Of involved,that
R9781 T12529 T12527 arg2Of involved,may
R9782 T12529 T12528 arg2Of involved,be
R9783 T12529 T12530 arg1Of involved,in
R9784 T12533 T12530 arg2Of disruption,in
R9785 T12533 T12531 arg1Of disruption,TNF-α-mediated
R9786 T12533 T12532 arg1Of disruption,BBB

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11691 99-102 Protein denotes TNF
T11690 53-56 Protein denotes p65
T11689 38-41 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12878 53-56 http://www.uniprot.org/uniprot/P21579 denotes p65
T12877 38-41 http://www.uniprot.org/uniprot/P21579 denotes p65
T12859 53-56 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12858 38-41 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12842 99-104 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T12830 99-102 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-BP

Id Subject Object Predicate Lexical cue
T11724 64-79 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T11649 0-129 Sentence denotes Therefore, it is likely that enhanced p65-Ser276 and p65-Ser311 phosphorylation may be involved in TNF-α-mediated BBB disruption.
T234 0-129 Sentence denotes Therefore, it is likely that enhanced p65-Ser276 and p65-Ser311 phosphorylation may be involved in TNF-α-mediated BBB disruption.

simple1

Id Subject Object Predicate Lexical cue
T11944 99-102 Protein denotes TNF
T11943 53-56 Protein denotes p65
T11942 38-41 Protein denotes p65

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14249 103-113 Positive_regulation denotes α-mediated
T14248 64-79 Phosphorylation denotes phosphorylation
T14247 29-37 Positive_regulation denotes enhanced
T14213 99-102 Protein denotes TNF
T14212 53-56 Protein denotes p65
T14211 38-41 Protein denotes p65
R11169 T14211 T14248 themeOf p65,phosphorylation
R11170 T14211 T14247 themeOf p65,enhanced
R11171 T14212 T14248 themeOf p65,phosphorylation
R11172 T14213 T14249 themeOf TNF,α-mediated
R11193 T14248 T14247 themeOf phosphorylation,enhanced
R11194 T14248 T14247 themeOf phosphorylation,enhanced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13816 99-102 Protein denotes TNF
T13815 53-56 Protein denotes p65
T13814 38-41 Protein denotes p65
T13849 103-113 Positive_regulation denotes α-mediated
T13848 64-79 Phosphorylation denotes phosphorylation
T13847 29-37 Positive_regulation denotes enhanced
R10990 T13814 T13848 themeOf p65,phosphorylation
R10992 T13814 T13847 themeOf p65,enhanced
R10994 T13815 T13848 themeOf p65,phosphorylation
R10998 T13816 T13849 themeOf TNF,α-mediated
R11038 T13848 T13847 themeOf phosphorylation,enhanced
R11042 T13848 T13847 themeOf phosphorylation,enhanced

DLUT931

Id Subject Object Predicate Lexical cue
T13926 29-37 Positive_regulation denotes enhanced
T13925 87-95 Positive_regulation denotes involved
T13924 64-79 Phosphorylation denotes phosphorylation
T13891 99-102 Protein denotes TNF
T13890 53-56 Protein denotes p65
T13889 38-41 Protein denotes p65
R11008 T13889 T13924 themeOf p65,phosphorylation
R11009 T13890 T13924 themeOf p65,phosphorylation
R11033 T13924 T13925 themeOf phosphorylation,involved
R11034 T13924 T13926 themeOf phosphorylation,enhanced
R11035 T13924 T13925 themeOf phosphorylation,involved
R11036 T13924 T13926 themeOf phosphorylation,enhanced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14296 99-104 Protein denotes TNF-α
T14413 53-79 Phosphorylation denotes p65-Ser311 phosphorylation
T14399 29-48 Positive_regulation denotes enhanced p65-Ser276
T14380 53-63 Protein denotes p65-Ser311
T14369 53-63 Entity denotes p65-Ser311
T14360 29-48 Protein denotes enhanced p65-Ser276
T14340 29-48 Entity denotes enhanced p65-Ser276
R11200 T14380 T14413 themeOf p65-Ser311,p65-Ser311 phosphorylation
R11214 T14360 T14399 themeOf enhanced p65-Ser276,enhanced p65-Ser276
R11216 T14369 T14380 partOf p65-Ser311,p65-Ser311
R11217 T14369 T14413 siteOf p65-Ser311,p65-Ser311 phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13485 128-129 . denotes .
T13484 118-128 NN denotes disruption
T13483 114-117 NNP denotes BBB
T13482 99-113 JJ denotes TNF-α-mediated
T13481 96-98 IN denotes in
T13480 87-95 VBN denotes involved
T13479 84-86 VB denotes be
T13478 80-83 MD denotes may
T13477 64-79 NN denotes phosphorylation
T13476 53-63 NN denotes p65-Ser311
T13475 49-52 CC denotes and
T13474 38-48 NN denotes p65-Ser276
T13473 29-37 JJ denotes enhanced
T13472 24-28 IN denotes that
T13471 17-23 JJ denotes likely
T13470 14-16 VBZ denotes is
T13469 11-13 PRP denotes it
T13468 9-10 , denotes ,
T13467 0-9 RB denotes Therefore
R10654 T13467 T13470 advmod Therefore,is
R10655 T13468 T13470 punct ",",is
R10656 T13469 T13470 nsubj it,is
R10657 T13470 T13470 ROOT is,is
R10658 T13471 T13470 acomp likely,is
R10659 T13472 T13480 mark that,involved
R10660 T13473 T13474 amod enhanced,p65-Ser276
R10661 T13474 T13480 nsubjpass p65-Ser276,involved
R10662 T13475 T13474 cc and,p65-Ser276
R10663 T13476 T13477 compound p65-Ser311,phosphorylation
R10664 T13477 T13474 conj phosphorylation,p65-Ser276
R10665 T13478 T13480 aux may,involved
R10666 T13479 T13480 auxpass be,involved
R10667 T13480 T13470 ccomp involved,is
R10668 T13481 T13480 prep in,involved
R10669 T13482 T13483 compound TNF-α-mediated,BBB
R10670 T13483 T13484 compound BBB,disruption
R10671 T13484 T13481 pobj disruption,in
R10672 T13485 T13470 punct .,is

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14001 29-37 Positive_regulation denotes enhanced
T14000 29-37 Positive_regulation denotes enhanced
T13999 29-37 Positive_regulation denotes enhanced
T13998 29-37 Positive_regulation denotes enhanced
T13997 64-79 Phosphorylation denotes phosphorylation
T13996 64-79 Phosphorylation denotes phosphorylation
T13995 64-79 Phosphorylation denotes phosphorylation
T13994 64-79 Phosphorylation denotes phosphorylation
T13993 99-104 Protein denotes TNF-α
T13992 57-63 Protein denotes Ser311
T13991 53-56 Protein denotes p65
T13990 42-48 Protein denotes Ser276
T13989 38-41 Protein denotes p65
R11075 T13989 T13994 themeOf p65,phosphorylation
R11077 T13990 T13995 themeOf Ser276,phosphorylation
R11079 T13991 T13996 themeOf p65,phosphorylation
R11085 T13992 T13997 themeOf Ser311,phosphorylation
R11087 T13994 T13998 themeOf phosphorylation,enhanced
R11089 T13995 T13999 themeOf phosphorylation,enhanced
R11090 T13996 T14000 themeOf phosphorylation,enhanced
R11094 T13997 T14001 themeOf phosphorylation,enhanced

testone

Id Subject Object Predicate Lexical cue
T11400 99-102 Protein denotes TNF
T11399 53-56 Protein denotes p65
T11398 38-41 Protein denotes p65
T11454 118-128 Negative_regulation denotes disruption
T11453 105-113 Positive_regulation denotes mediated
T11452 87-95 Regulation denotes involved
T11451 64-79 Phosphorylation denotes phosphorylation
T11450 57-63 Entity denotes Ser311
T11449 42-48 Entity denotes Ser276
T11448 29-37 Positive_regulation denotes enhanced
R9048 T11398 T11451 themeOf p65,phosphorylation
R9049 T11399 T11451 themeOf p65,phosphorylation
R9076 T11449 T11398 partOf Ser276,p65
R9077 T11449 T11451 themeOf Ser276,phosphorylation
R9078 T11450 T11399 partOf Ser311,p65
R9079 T11450 T11398 partOf Ser311,p65
R9080 T11450 T11451 themeOf Ser311,phosphorylation
R9081 T11451 T11448 themeOf phosphorylation,enhanced
R9082 T11454 T11453 themeOf disruption,mediated

test3

Id Subject Object Predicate Lexical cue
T11576 118-128 Negative_regulation denotes disruption
T11575 105-113 Positive_regulation denotes mediated
T11574 99-102 Protein denotes TNF
T11573 87-95 Regulation denotes involved
T11572 64-79 Phosphorylation denotes phosphorylation
T11571 57-63 Entity denotes Ser311
T11570 53-56 Protein denotes p65
T11569 42-48 Entity denotes Ser276
T11568 38-41 Protein denotes p65
T11567 29-37 Positive_regulation denotes enhanced
T11498 99-102 Protein denotes TNF
T11497 53-56 Protein denotes p65
T11496 38-41 Protein denotes p65
R9119 T11568 T11572 themeOf p65,phosphorylation
R9120 T11569 T11572 themeOf Ser276,phosphorylation
R9121 T11569 T11568 partOf Ser276,p65
R9122 T11570 T11572 themeOf p65,phosphorylation
R9123 T11571 T11572 themeOf Ser311,phosphorylation
R9124 T11572 T11567 themeOf phosphorylation,enhanced
R9125 T11572 T11573 causeOf phosphorylation,involved
R9126 T11576 T11575 themeOf disruption,mediated