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PMC:3312845 / 1013-1210 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T377 183-189 NN denotes SMI-71
T376 180-182 IN denotes by
T375 168-179 VB denotes accompanied
T374 162-167 NN denotes cells
T373 150-161 JJ denotes endothelial
T372 147-149 IN denotes in
T371 137-146 VB denotes increased
T370 133-136 VB denotes was
T369 117-132 NN denotes phosphorylation
T368 106-116 NN denotes p65-Thr435
T367 101-105 RB denotes only
T366 99-100 -COMMA- denotes ,
T365 91-99 NN denotes addition
T364 88-90 IN denotes In
T363 76-86 NN denotes astrocytes
T362 73-75 IN denotes as
T361 68-72 RB denotes well
T360 65-67 RB denotes as
T359 59-64 NN denotes cells
T358 47-58 JJ denotes endothelial
T357 44-46 IN denotes in
T356 35-43 VB denotes detected
T355 31-34 VB denotes was
T354 20-30 NN denotes expression
T353 11-19 NN denotes receptor
T352 7-10 NN denotes p75
T351 3-6 NN denotes TNF
T350 1-2 -COMMA- denotes ,
R179 T354 T351 arg1Of expression,TNF
R180 T354 T352 arg1Of expression,p75
R181 T354 T353 arg1Of expression,receptor
R182 T354 T355 arg1Of expression,was
R183 T354 T356 arg2Of expression,detected
R185 T356 T350 arg1Of detected,","
R186 T356 T355 arg2Of detected,was
R187 T356 T357 arg1Of detected,in
R188 T359 T358 arg1Of cells,endothelial
R189 T359 T362 arg1Of cells,as
R190 T362 T357 arg2Of as,in
R191 T362 T360 arg1Of as,as
R192 T362 T361 arg1Of as,well
R193 T363 T362 arg2Of astrocytes,as
R194 T365 T364 arg2Of addition,In
R195 T369 T367 arg1Of phosphorylation,only
R196 T369 T368 arg1Of phosphorylation,p65-Thr435
R197 T369 T370 arg1Of phosphorylation,was
R198 T369 T371 arg2Of phosphorylation,increased
R199 T371 T364 arg1Of increased,In
R200 T371 T366 arg1Of increased,","
R201 T371 T370 arg2Of increased,was
R202 T371 T372 arg1Of increased,in
R203 T374 T372 arg2Of cells,in
R204 T374 T373 arg1Of cells,endothelial
R205 T374 T375 arg2Of cells,accompanied

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T152 3-19 Protein denotes TNF p75 receptor
T153 106-109 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T459 106-109 http://www.uniprot.org/uniprot/Q04206 denotes p65
T463 106-109 http://www.uniprot.org/uniprot/P21579 denotes p65
T470 3-6 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-BP

Id Subject Object Predicate Lexical cue
T170 117-132 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T181 59-64 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T182 162-167 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

simple1

Id Subject Object Predicate Lexical cue
T193 106-109 Protein denotes p65
T192 3-19 Protein denotes TNF p75 receptor

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T916 3-19 Protein denotes TNF p75 receptor
T917 106-109 Protein denotes p65
T926 20-30 Gene_expression denotes expression
T927 137-146 Positive_regulation denotes increased
T928 117-132 Phosphorylation denotes phosphorylation
R647 T916 T926 themeOf TNF p75 receptor,expression
R648 T917 T928 themeOf p65,phosphorylation
R651 T928 T927 themeOf phosphorylation,increased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T768 20-30 Gene_expression denotes expression
T758 106-109 Protein denotes p65
T757 3-19 Protein denotes TNF p75 receptor
T770 137-146 Positive_regulation denotes increased
T769 117-132 Phosphorylation denotes phosphorylation
R556 T757 T768 themeOf TNF p75 receptor,expression
R557 T758 T769 themeOf p65,phosphorylation
R564 T769 T770 themeOf phosphorylation,increased

DLUT931

Id Subject Object Predicate Lexical cue
T799 3-19 Protein denotes TNF p75 receptor
T800 106-109 Protein denotes p65
T811 20-30 Gene_expression denotes expression
T812 117-132 Phosphorylation denotes phosphorylation
T813 137-146 Positive_regulation denotes increased
R625 T799 T811 themeOf TNF p75 receptor,expression
R626 T800 T812 themeOf p65,phosphorylation
R634 T812 T813 themeOf phosphorylation,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T986 101-146 Positive_regulation denotes only p65-Thr435 phosphorylation was increased
T985 101-132 Phosphorylation denotes only p65-Thr435 phosphorylation
T983 3-30 Gene_expression denotes TNF p75 receptor expression
T978 47-86 Entity denotes endothelial cells as well as astrocytes
T964 3-19 Protein denotes TNF p75 receptor
T939 106-116 Entity denotes p65-Thr435
T943 106-116 Protein denotes p65-Thr435
T951 76-86 Entity denotes astrocytes
R600 T964 T983 themeOf TNF p75 receptor,TNF p75 receptor expression
R605 T985 T986 themeOf only p65-Thr435 phosphorylation,only p65-Thr435 phosphorylation was increased
R656 T939 T943 partOf p65-Thr435,p65-Thr435
R657 T939 T985 siteOf p65-Thr435,only p65-Thr435 phosphorylation
R658 T943 T985 themeOf p65-Thr435,only p65-Thr435 phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T664 183-189 NNP denotes SMI-71
T663 180-182 IN denotes by
T662 168-179 VBN denotes accompanied
T661 162-167 NNS denotes cells
T660 150-161 JJ denotes endothelial
T659 147-149 IN denotes in
T658 137-146 VBN denotes increased
T657 133-136 VBD denotes was
T656 117-132 NN denotes phosphorylation
T655 106-116 JJ denotes p65-Thr435
T654 101-105 RB denotes only
T653 99-100 , denotes ,
T652 91-99 NN denotes addition
T651 88-90 IN denotes In
T650 86-87 . denotes .
T649 76-86 NNS denotes astrocytes
T648 73-75 IN denotes as
T647 68-72 RB denotes well
T646 65-67 RB denotes as
T645 59-64 NNS denotes cells
T644 47-58 JJ denotes endothelial
T643 44-46 IN denotes in
T642 35-43 VBN denotes detected
T641 31-34 VBD denotes was
T640 20-30 NN denotes expression
T639 11-19 NN denotes receptor
T638 7-10 NN denotes p75
T637 3-6 NNP denotes TNF
T636 1-2 , denotes ,
R453 T647 T648 advmod well,as
R454 T648 T645 cc as,cells
R455 T649 T645 conj astrocytes,cells
R456 T650 T642 punct .,detected
R457 T651 T658 prep In,increased
R458 T652 T651 pobj addition,In
R459 T653 T658 punct ",",increased
R442 T636 T642 punct ",",detected
R443 T637 T640 compound TNF,expression
R444 T638 T640 compound p75,expression
R445 T639 T640 compound receptor,expression
R446 T640 T642 nsubjpass expression,detected
R447 T641 T642 auxpass was,detected
R448 T642 T642 ROOT detected,detected
R449 T643 T642 prep in,detected
R450 T644 T645 amod endothelial,cells
R451 T645 T643 pobj cells,in
R452 T646 T648 advmod as,as
R460 T654 T656 advmod only,phosphorylation
R461 T655 T656 amod p65-Thr435,phosphorylation
R462 T656 T658 nsubjpass phosphorylation,increased
R463 T657 T658 auxpass was,increased
R464 T658 T658 ROOT increased,increased
R465 T659 T658 prep in,increased
R466 T660 T661 amod endothelial,cells
R467 T661 T659 pobj cells,in
R468 T662 T661 acl accompanied,cells
R469 T663 T662 agent by,accompanied

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T859 137-146 Positive_regulation denotes increased
T858 137-146 Positive_regulation denotes increased
T857 117-132 Phosphorylation denotes phosphorylation
T856 117-132 Phosphorylation denotes phosphorylation
T855 110-116 Protein denotes Thr435
T854 106-109 Protein denotes p65
T853 20-30 Gene_expression denotes expression
T852 3-19 Protein denotes TNF p75 receptor
R568 T852 T853 themeOf TNF p75 receptor,expression
R569 T854 T856 themeOf p65,phosphorylation
R570 T855 T857 themeOf Thr435,phosphorylation
R571 T856 T858 themeOf phosphorylation,increased
R572 T857 T859 themeOf phosphorylation,increased

testone

Id Subject Object Predicate Lexical cue
T24 3-19 Protein denotes TNF p75 receptor
T25 106-109 Protein denotes p65
T40 20-30 Gene_expression denotes expression
T41 117-132 Phosphorylation denotes phosphorylation
T42 137-146 Positive_regulation denotes increased
R4 T24 T40 themeOf TNF p75 receptor,expression
R5 T25 T41 themeOf p65,phosphorylation
R12 T41 T42 themeOf phosphorylation,increased

test3

Id Subject Object Predicate Lexical cue
T80 137-146 Positive_regulation denotes increased
T79 117-132 Phosphorylation denotes phosphorylation
T78 106-109 Protein denotes p65
T77 20-30 Gene_expression denotes expression
T76 3-19 Protein denotes TNF p75 receptor
T56 3-19 Protein denotes TNF p75 receptor
T57 106-109 Protein denotes p65
R22 T76 T77 themeOf TNF p75 receptor,expression
R23 T78 T79 themeOf p65,phosphorylation
R24 T79 T80 themeOf phosphorylation,increased