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PMC:3291650 / 5581-7119 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T899 1481-1486 Protein denotes RBCK1
T898 1465-1471 Protein denotes TRIM21
T897 1454-1458 Protein denotes RAUL
T896 1412-1416 Protein denotes IRF7
T895 1403-1407 Protein denotes IRF3
T894 1271-1282 Protein_catabolism denotes degradation
T893 1241-1246 Protein denotes TRAF3
T892 1232-1236 Protein denotes MAVS
T891 1201-1208 Protein denotes TRIAD3A
T890 1187-1191 Protein denotes AIP4
T889 1021-1024 Protein denotes RLR
T888 1012-1020 Regulation denotes regulate
T887 949-953 Protein denotes CYLD
T886 938-942 Protein denotes DUBA
T885 859-864 Protein denotes RIG-I
T884 843-853 Positive_regulation denotes activation
T883 838-842 Protein denotes IRF3
T882 796-801 Protein denotes TRAF3
T881 775-780 Protein denotes TRAF6
T880 699-704 Protein denotes RIG-I
T879 644-650 Protein denotes Riplet
T878 628-634 Protein denotes TRIM25
T877 541-546 Protein denotes RIG-I
T876 430-434 Protein denotes MAVS
T875 363-394 Entity denotes C-terminal transmembrane domain
T874 291-303 Localization denotes translocates
T873 247-253 Protein denotes Cardif
T872 241-245 Protein denotes VISA
T871 234-239 Protein denotes IPS-1
T870 216-220 Protein denotes MAVS
T869 178-187 Binding denotes associate
T868 172-177 Protein denotes RIG-I
T867 143-150 Binding denotes binding
T866 0-5 Protein denotes RIG-I
T833 1481-1486 Protein denotes RBCK1
T832 1465-1471 Protein denotes TRIM21
T831 1454-1458 Protein denotes RAUL
T830 1412-1416 Protein denotes IRF7
T829 1403-1407 Protein denotes IRF3
T828 1241-1246 Protein denotes TRAF3
T827 1232-1236 Protein denotes MAVS
T826 1201-1208 Protein denotes TRIAD3A
T811 241-245 Protein denotes VISA
T810 234-239 Protein denotes IPS-1
T809 216-220 Protein denotes MAVS
T808 172-177 Protein denotes RIG-I
T807 0-5 Protein denotes RIG-I
T825 1187-1191 Protein denotes AIP4
T824 1021-1024 Protein denotes RLR
T823 949-953 Protein denotes CYLD
T822 938-942 Protein denotes DUBA
T821 859-864 Protein denotes RIG-I
T820 838-842 Protein denotes IRF3
T819 796-801 Protein denotes TRAF3
T818 775-780 Protein denotes TRAF6
T817 699-704 Protein denotes RIG-I
T816 644-650 Protein denotes Riplet
T815 628-634 Protein denotes TRIM25
T814 541-546 Protein denotes RIG-I
T813 430-434 Protein denotes MAVS
T812 247-253 Protein denotes Cardif
R534 T868 T869 themeOf RIG-I,associate
R535 T870 T874 themeOf MAVS,translocates
R536 T871 T874 themeOf IPS-1,translocates
R537 T872 T874 themeOf VISA,translocates
R538 T873 T874 themeOf Cardif,translocates
R539 T875 T870 partOf C-terminal transmembrane domain,MAVS
R540 T875 T867 themeOf C-terminal transmembrane domain,binding
R541 T875 T874 themeOf C-terminal transmembrane domain,translocates
R542 T875 T868 partOf C-terminal transmembrane domain,RIG-I
R543 T875 T871 partOf C-terminal transmembrane domain,IPS-1
R544 T875 T873 partOf C-terminal transmembrane domain,Cardif
R545 T881 T884 themeOf TRAF6,activation
R546 T882 T884 themeOf TRAF3,activation
R547 T883 T884 themeOf IRF3,activation
R548 T885 T884 causeOf RIG-I,activation

2_test

Id Subject Object Predicate Lexical cue
22396652-16153868-98461820 396-398 16153868 denotes 17
22396652-16127453-98461821 401-403 16127453 denotes 20
22396652-17392790-98461822 636-638 17392790 denotes 22
22396652-19484123-98461823 652-654 19484123 denotes 23
22396652-21147464-98461824 658-660 21147464 denotes 24
22396652-16306936-98461825 782-784 16306936 denotes 25
22396652-16306937-98461826 788-790 16306937 denotes 26
22396652-19479062-98461827 803-805 19479062 denotes 27
22396652-17991829-98461828 944-946 17991829 denotes 28
22396652-18467330-98461829 955-957 18467330 denotes 29
22396652-18636086-98461830 961-963 18636086 denotes 30
22396652-19996094-98461831 978-980 19996094 denotes 31
22396652-19881509-98461832 1193-1195 19881509 denotes 32
22396652-19893624-98461833 1210-1212 19893624 denotes 33
22396652-21167755-98461834 1460-1462 21167755 denotes 34
22396652-19635865-98461835 1473-1475 19635865 denotes 35
22396652-18711448-98461836 1488-1490 18711448 denotes 36

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1999 961-963 CD denotes 30
T2094 1525-1537 NN denotes transduction
T2093 1518-1524 NN denotes signal
T2092 1508-1517 JJ denotes antiviral
T2091 1500-1507 VB denotes dampens
T2090 1492-1499 RB denotes further
T2089 1490-1491 -RRB- denotes ]
T2088 1488-1490 CD denotes 36
T2087 1487-1488 -LRB- denotes [
T2086 1481-1486 NN denotes RBCK1
T2085 1477-1480 CC denotes and
T2084 1475-1476 -RRB- denotes ]
T2083 1473-1475 CD denotes 35
T2082 1472-1473 -LRB- denotes [
T2081 1465-1471 NN denotes TRIM21
T2080 1463-1464 -COMMA- denotes ,
T2079 1462-1463 -RRB- denotes ]
T2078 1460-1462 CD denotes 34
T2077 1459-1460 -LRB- denotes [
T2076 1454-1458 NN denotes RAUL
T2075 1451-1453 IN denotes as
T2074 1446-1450 JJ denotes such
T2073 1442-1445 NN denotes E3s
T2072 1439-1441 IN denotes by
T2071 1431-1438 NN denotes factors
T2070 1417-1430 NN denotes transcription
T2069 1412-1416 NN denotes IRF7
T2068 1408-1411 CC denotes and
T2067 1403-1407 NN denotes IRF3
T2066 1399-1402 DT denotes the
T2065 1396-1398 TO denotes to
T2064 1389-1395 NN denotes chains
T2063 1375-1388 NN denotes polyubiquitin
T2062 1362-1374 JJ denotes K48-specific
T2061 1359-1361 IN denotes of
T2060 1348-1358 NN denotes attachment
T2059 1344-1347 DT denotes the
T2058 1342-1343 -COMMA- denotes ,
T2057 1330-1342 RB denotes Additionally
T2056 1319-1328 NN denotes signaling
T2055 1308-1318 JJ denotes downstream
T2054 1300-1307 JJ denotes further
T2053 1289-1299 VB denotes inhibiting
T2052 1284-1288 RB denotes thus
T2051 1282-1283 -COMMA- denotes ,
T2050 1271-1282 NN denotes degradation
T2049 1262-1270 VB denotes mediated
T2048 1251-1261 NN denotes proteasome
T2047 1247-1250 IN denotes for
T2046 1241-1246 NN denotes TRAF3
T2045 1237-1240 CC denotes and
T2044 1232-1236 NN denotes MAVS
T2043 1219-1231 RB denotes respectively
T2042 1214-1218 NN denotes mark
T2041 1212-1213 -RRB- denotes ]
T2040 1210-1212 CD denotes 33
T2039 1209-1210 -LRB- denotes [
T2038 1201-1208 NN denotes TRIAD3A
T2037 1197-1200 CC denotes and
T2036 1195-1196 -RRB- denotes ]
T2035 1193-1195 CD denotes 32
T2034 1192-1193 -LRB- denotes [
T2033 1187-1191 NN denotes AIP4
T2032 1184-1186 IN denotes as
T2031 1179-1183 JJ denotes such
T2030 1177-1178 -COMMA- denotes ,
T2029 1170-1177 NN denotes ligases
T2028 1160-1169 NN denotes ubiquitin
T2027 1147-1159 JJ denotes K48-specific
T2026 1139-1146 JJ denotes various
T2025 1137-1138 -COMMA- denotes ,
T2024 1126-1137 RB denotes Furthermore
T2023 1115-1124 NN denotes molecules
T2022 1105-1114 VB denotes signaling
T2021 1097-1104 JJ denotes several
T2020 1092-1096 IN denotes from
T2019 1085-1091 NN denotes chains
T2018 1071-1084 NN denotes polyubiquitin
T2017 1060-1070 JJ denotes K63-linked
T2016 1051-1059 VB denotes removing
T2015 1038-1050 RB denotes specifically
T2014 1035-1037 IN denotes by
T2013 1025-1034 NN denotes signaling
T2012 1021-1024 NN denotes RLR
T2011 1012-1020 VB denotes regulate
T2010 1001-1011 RB denotes negatively
T2009 998-1000 TO denotes to
T2008 992-997 VB denotes shown
T2007 987-991 VB denotes been
T2006 982-986 VB denotes have
T2005 980-981 -RRB- denotes ]
T2004 978-980 CD denotes 31
T2003 977-978 -LRB- denotes [
T2002 969-976 NN denotes OTUB1/2
T2001 965-968 CC denotes and
T2000 963-964 -RRB- denotes ]
T1998 960-961 -LRB- denotes [
T1997 958-959 -COMMA- denotes ,
T1996 957-958 -RRB- denotes ]
T1995 955-957 CD denotes 29
T1994 954-955 -LRB- denotes [
T1993 949-953 NN denotes CYLD
T1992 947-948 -COMMA- denotes ,
T1991 946-947 -RRB- denotes ]
T1990 944-946 CD denotes 28
T1989 943-944 -LRB- denotes [
T1988 938-942 NNP denotes DUBA
T1987 935-937 IN denotes as
T1986 930-934 JJ denotes such
T1985 928-929 -COMMA- denotes ,
T1984 927-928 -RRB- denotes )
T1983 923-927 NN denotes DUBs
T1982 922-923 -LRB- denotes (
T1981 914-921 NN denotes enzymes
T1980 897-913 VB denotes deubiquitinating
T1979 895-896 -COMMA- denotes ,
T1978 891-895 NN denotes hand
T1977 885-890 JJ denotes other
T1976 881-884 DT denotes the
T1975 878-880 IN denotes On
T1974 865-876 NN denotes stimulation
T1973 859-864 NN denotes RIG-I
T1972 854-858 IN denotes upon
T1971 843-853 NN denotes activation
T1970 838-842 NN denotes IRF3
T1969 834-837 CC denotes and
T1968 828-833 NN denotes NF-κB
T1967 815-827 RB denotes respectively
T1966 807-814 VB denotes mediate
T1965 805-806 -RRB- denotes ]
T1964 803-805 CD denotes 27
T1963 802-803 -LRB- denotes [
T1962 796-801 NN denotes TRAF3
T1961 792-795 CC denotes and
T1960 790-791 -RRB- denotes ]
T1959 788-790 CD denotes 26
T1958 787-788 -LRB- denotes [
T1957 785-786 -COMMA- denotes ,
T1956 784-785 -RRB- denotes ]
T1955 782-784 CD denotes 25
T1954 781-782 -LRB- denotes [
T1953 775-780 NN denotes TRAF6
T1952 772-774 IN denotes as
T1951 767-771 JJ denotes such
T1950 759-766 NN denotes ligases
T1949 749-758 NN denotes ubiquitin
T1948 735-748 VB denotes characterized
T1947 730-734 RB denotes well
T1946 728-729 -COMMA- denotes ,
T1945 720-728 NN denotes addition
T1944 717-719 IN denotes In
T1943 705-715 NN denotes activation
T1942 699-704 NN denotes RIG-I
T1941 691-698 VB denotes promote
T1940 682-690 RB denotes directly
T1939 679-681 TO denotes to
T1938 673-678 VB denotes shown
T1937 668-672 VB denotes been
T1936 663-667 VB denotes have
T1935 661-662 -COMMA- denotes ,
T1920 620-624 JJ denotes such
T1919 618-619 -COMMA- denotes ,
T1918 617-618 -RRB- denotes )
T1917 614-617 NN denotes E3s
T1916 613-614 -LRB- denotes (
T1915 605-612 NN denotes ligases
T1914 595-604 NN denotes ubiquitin
T1913 582-594 JJ denotes K63-specific
T1912 579-580 -RRB- denotes ]
T1911 577-579 CD denotes 21
T1910 576-577 -LRB- denotes [
T1909 563-575 NN denotes transduction
T1908 556-562 NN denotes signal
T1907 547-555 JJ denotes mediated
T1906 541-546 NN denotes RIG-I
T1905 532-540 VB denotes regulate
T1904 521-531 RB denotes negatively
T1903 517-520 CC denotes and
T1902 506-516 RB denotes positively
T1901 501-505 CC denotes both
T1900 495-500 WDT denotes which
T1899 493-494 -COMMA- denotes ,
T1898 486-493 NN denotes enzymes
T1897 476-485 VB denotes modifying
T1896 466-475 NN denotes ubiquitin
T1895 458-465 JJ denotes various
T1894 455-457 IN denotes of
T1893 448-454 NN denotes action
T1892 444-447 DT denotes the
T1891 435-443 VB denotes requires
T1890 430-434 NN denotes MAVS
T1889 427-429 IN denotes of
T1888 416-426 RB denotes downstream
T1887 406-415 VB denotes Signaling
T1886 403-404 -RRB- denotes ]
T1885 401-403 CD denotes 20
T1884 400-401 -LRB- denotes [
T1883 399-400 CD denotes –
T1882 398-399 -RRB- denotes ]
T1881 396-398 CD denotes 17
T1880 395-396 -LRB- denotes [
T1879 388-394 NN denotes domain
T1878 374-387 NN denotes transmembrane
T1877 363-373 JJ denotes C-terminal
T1876 359-362 PRP-DOLLAR- denotes its
T1875 355-358 IN denotes via
T1874 346-354 NN denotes membrane
T1873 332-345 JJ denotes mitochondrial
T1872 326-331 JJ denotes outer
T1871 322-325 DT denotes the
T1870 319-321 IN denotes in
T1869 311-318 NN denotes inserts
T1868 307-310 CC denotes and
T1867 304-306 TO denotes to
T1866 291-303 VB denotes translocates
T1865 278-290 RB denotes subsequently
T1864 272-277 WDT denotes which
T1863 270-271 -COMMA- denotes ,
T1862 263-270 NN denotes protein
T1861 255-262 NN denotes adaptor
T1860 253-254 -RRB- denotes )
T1859 247-253 NNP denotes Cardif
T1858 245-246 -COMMA- denotes ,
T1857 241-245 NN denotes VISA
T1856 239-240 -COMMA- denotes ,
T1855 234-239 NN denotes IPS-1
T1854 227-233 VB denotes termed
T1853 222-226 RB denotes also
T1852 221-222 -LRB- denotes (
T1851 216-220 NN denotes MAVS
T1850 212-215 DT denotes the
T1849 209-211 IN denotes of
T1848 202-208 NN denotes domain
T1847 197-201 NN denotes CARD
T1846 193-196 DT denotes the
T1845 188-192 IN denotes with
T1844 178-187 VB denotes associate
T1843 172-177 NN denotes RIG-I
T1842 169-171 IN denotes of
T1841 161-168 NN denotes domains
T1840 156-160 NN denotes CARD
T1839 152-155 DT denotes the
T1838 150-151 -COMMA- denotes ,
T1837 143-150 NN denotes binding
T1836 136-142 NN denotes ligand
T1835 131-135 IN denotes Upon
T1834 122-129 NN denotes domains
T1833 117-121 NN denotes CARD
T1832 106-116 JJ denotes N-terminal
T1831 102-105 CD denotes two
T1830 98-101 CC denotes and
T1829 96-97 -COMMA- denotes ,
T1828 85-96 NN denotes recognition
T1827 78-84 NN denotes ligand
T1826 74-77 IN denotes for
T1825 65-73 VB denotes required
T1824 62-64 VB denotes is
T1823 56-61 WDT denotes which
T1822 54-55 -COMMA- denotes ,
T1821 48-54 NN denotes domain
T1820 39-47 NN denotes helicase
T1819 35-38 NN denotes box
T1818 28-34 NN denotes DExD/H
T1817 17-27 JJ denotes C-terminal
T1816 15-16 DT denotes a
T1815 6-14 VB denotes contains
T1814 0-5 NN denotes RIG-I
T1934 660-661 -RRB- denotes ]
T1933 658-660 CD denotes 24
T1932 657-658 -LRB- denotes [
T1931 655-656 -COMMA- denotes ,
T1930 654-655 -RRB- denotes ]
T1929 652-654 CD denotes 23
T1928 651-652 -LRB- denotes [
T1927 644-650 NNP denotes Riplet
T1926 640-643 CC denotes and
T1925 638-639 -RRB- denotes ]
T1924 636-638 CD denotes 22
T1923 635-636 -LRB- denotes [
T1922 628-634 NN denotes TRIM25
T1921 625-627 IN denotes as
R1083 T1814 T1815 arg1Of RIG-I,contains
R1084 T1821 T1815 arg2Of domain,contains
R1085 T1821 T1816 arg1Of domain,a
R1086 T1821 T1817 arg1Of domain,C-terminal
R1087 T1821 T1818 arg1Of domain,DExD/H
R1088 T1821 T1819 arg1Of domain,box
R1089 T1821 T1820 arg1Of domain,helicase
R1090 T1821 T1822 arg1Of domain,","
R1091 T1821 T1823 arg1Of domain,which
R1092 T1821 T1824 arg1Of domain,is
R1093 T1821 T1825 arg2Of domain,required
R1094 T1825 T1824 arg2Of required,is
R1095 T1825 T1826 arg1Of required,for
R1096 T1828 T1827 arg1Of recognition,ligand
R1097 T1828 T1830 arg1Of recognition,and
R1098 T1830 T1826 arg2Of and,for
R1099 T1830 T1829 arg1Of and,","
R1100 T1834 T1830 arg2Of domains,and
R1101 T1834 T1831 arg1Of domains,two
R1102 T1834 T1832 arg1Of domains,N-terminal
R1103 T1834 T1833 arg1Of domains,CARD
R1104 T1837 T1835 arg2Of binding,Upon
R1105 T1837 T1836 arg1Of binding,ligand
R1106 T1841 T1839 arg1Of domains,the
R1107 T1841 T1840 arg1Of domains,CARD
R1108 T1841 T1842 arg1Of domains,of
R1109 T1841 T1844 arg1Of domains,associate
R1110 T1843 T1842 arg2Of RIG-I,of
R1111 T1844 T1835 arg1Of associate,Upon
R1112 T1844 T1838 arg1Of associate,","
R1113 T1844 T1845 arg1Of associate,with
R1114 T1848 T1845 arg2Of domain,with
R1115 T1848 T1846 arg1Of domain,the
R1116 T1848 T1847 arg1Of domain,CARD
R1117 T1848 T1849 arg1Of domain,of
R1118 T1851 T1852 arg1Of MAVS,(
R1119 T1854 T1852 arg2Of termed,(
R1120 T1854 T1853 arg1Of termed,also
R1121 T1855 T1854 arg3Of IPS-1,termed
R1122 T1855 T1856 arg1Of IPS-1,","
R1123 T1855 T1858 arg1Of IPS-1,","
R1124 T1855 T1859 arg1Of IPS-1,Cardif
R1125 T1857 T1856 arg2Of VISA,","
R1126 T1860 T1852 arg3Of ),(
R1127 T1862 T1849 arg2Of protein,of
R1128 T1862 T1850 arg1Of protein,the
R1129 T1862 T1851 arg1Of protein,MAVS
R1130 T1862 T1861 arg1Of protein,adaptor
R1131 T1862 T1863 arg1Of protein,","
R1132 T1862 T1864 arg1Of protein,which
R1133 T1862 T1866 arg1Of protein,translocates
R1134 T1866 T1865 arg1Of translocates,subsequently
R1135 T1866 T1867 arg1Of translocates,to
R1136 T1866 T1870 arg1Of translocates,in
R1137 T1866 T1875 arg1Of translocates,via
R1138 T1866 T1880 arg1Of translocates,[
R1139 T1866 T1884 arg1Of translocates,[
R1140 T1869 T1867 arg2Of inserts,to
R1141 T1869 T1868 arg1Of inserts,and
R1142 T1874 T1870 arg2Of membrane,in
R1143 T1874 T1871 arg1Of membrane,the
R1144 T1874 T1872 arg1Of membrane,outer
R1145 T1874 T1873 arg1Of membrane,mitochondrial
R1146 T1879 T1875 arg2Of domain,via
R1147 T1879 T1876 arg1Of domain,its
R1148 T1879 T1877 arg1Of domain,C-terminal
R1149 T1879 T1878 arg1Of domain,transmembrane
R1150 T1881 T1880 arg2Of 17,[
R1151 T1882 T1880 arg3Of ],[
R1152 T1883 T1866 arg2Of –,translocates
R1153 T1885 T1884 arg2Of 20,[
R1154 T1886 T1884 arg3Of ],[
R1155 T1887 T1888 arg1Of Signaling,downstream
R1156 T1887 T1891 arg1Of Signaling,requires
R1157 T1888 T1889 arg1Of downstream,of
R1158 T1890 T1889 arg2Of MAVS,of
R1159 T1893 T1891 arg2Of action,requires
R1160 T1893 T1892 arg1Of action,the
R1161 T1893 T1894 arg1Of action,of
R1162 T1893 T1897 arg1Of action,modifying
R1163 T1896 T1894 arg2Of ubiquitin,of
R1164 T1948 T1947 arg1Of characterized,well
R1165 T1896 T1895 arg1Of ubiquitin,various
R1166 T1898 T1897 arg2Of enzymes,modifying
R1167 T1950 T1948 arg1Of ligases,characterized
R1168 T1950 T1949 arg1Of ligases,ubiquitin
R1169 T1950 T1952 arg1Of ligases,as
R1170 T1950 T1961 arg1Of ligases,and
R1171 T1898 T1899 arg1Of enzymes,","
R1172 T1898 T1900 arg1Of enzymes,which
R1173 T1952 T1951 arg1Of as,such
R1174 T1953 T1952 arg2Of TRAF6,as
R1175 T1953 T1954 arg1Of TRAF6,[
R1176 T1953 T1957 arg1Of TRAF6,","
R1177 T1953 T1958 arg1Of TRAF6,[
R1178 T1955 T1954 arg2Of 25,[
R1179 T1898 T1905 arg1Of enzymes,regulate
R1180 T1956 T1954 arg3Of ],[
R1181 T1902 T1903 arg1Of positively,and
R1182 T1959 T1958 arg2Of 26,[
R1183 T1960 T1958 arg3Of ],[
R1184 T1961 T1966 arg1Of and,mediate
R1185 T1962 T1961 arg2Of TRAF3,and
R1186 T1962 T1963 arg1Of TRAF3,[
R1187 T1903 T1901 arg1Of and,both
R1188 T1964 T1963 arg2Of 27,[
R1189 T1965 T1963 arg3Of ],[
R1190 T1966 T1944 arg1Of mediate,In
R1191 T1966 T1946 arg1Of mediate,","
R1192 T1966 T1967 arg1Of mediate,respectively
R1193 T1966 T1972 arg1Of mediate,upon
R1194 T1904 T1903 arg2Of negatively,and
R1195 T1968 T1969 arg1Of NF-κB,and
R1196 T1969 T1966 arg2Of and,mediate
R1197 T1905 T1902 arg1Of regulate,positively
R1198 T1971 T1969 arg2Of activation,and
R1199 T1971 T1970 arg1Of activation,IRF3
R1200 T1905 T1904 arg1Of regulate,negatively
R1201 T1909 T1905 arg2Of transduction,regulate
R1202 T1974 T1972 arg2Of stimulation,upon
R1203 T1974 T1973 arg1Of stimulation,RIG-I
R1204 T1978 T1975 arg2Of hand,On
R1205 T1978 T1976 arg1Of hand,the
R1206 T1978 T1977 arg1Of hand,other
R1207 T1980 T1998 arg1Of deubiquitinating,[
R1208 T1980 T2001 arg1Of deubiquitinating,and
R1209 T1981 T1980 arg2Of enzymes,deubiquitinating
R1210 T1981 T1982 arg1Of enzymes,(
R1211 T1981 T1985 arg1Of enzymes,","
R1212 T1981 T1987 arg1Of enzymes,as
R1213 T1981 T1997 arg1Of enzymes,","
R1214 T1909 T1906 arg1Of transduction,RIG-I
R1215 T1983 T1982 arg2Of DUBs,(
R1216 T1909 T1907 arg1Of transduction,mediated
R1217 T1984 T1982 arg3Of ),(
R1218 T1909 T1908 arg1Of transduction,signal
R1219 T1909 T1910 arg1Of transduction,[
R1220 T1911 T1910 arg2Of 21,[
R1221 T1987 T1986 arg1Of as,such
R1222 T1988 T1989 arg1Of DUBA,[
R1223 T1988 T1992 arg1Of DUBA,","
R1224 T1990 T1989 arg2Of 28,[
R1225 T1991 T1989 arg3Of ],[
R1226 T1992 T1987 arg2Of ",",as
R1227 T1993 T1992 arg2Of CYLD,","
R1228 T1993 T1994 arg1Of CYLD,[
R1229 T1995 T1994 arg2Of 29,[
R1230 T1912 T1910 arg3Of ],[
R1231 T1996 T1994 arg3Of ],[
R1232 T1915 T1913 arg1Of ligases,K63-specific
R1233 T1999 T1998 arg2Of 30,[
R1234 T2000 T1998 arg3Of ],[
R1235 T2001 T2006 arg1Of and,have
R1236 T2001 T2007 arg1Of and,been
R1237 T2001 T2008 arg2Of and,shown
R1238 T2001 T2011 arg1Of and,regulate
R1239 T2002 T2001 arg2Of OTUB1/2,and
R1240 T2002 T2003 arg1Of OTUB1/2,[
R1241 T2004 T2003 arg2Of 31,[
R1242 T1915 T1914 arg1Of ligases,ubiquitin
R1243 T2005 T2003 arg3Of ],[
R1244 T1915 T1916 arg1Of ligases,(
R1245 T1915 T1919 arg1Of ligases,","
R1246 T1915 T1921 arg1Of ligases,as
R1247 T2008 T1975 arg1Of shown,On
R1248 T2008 T1979 arg1Of shown,","
R1249 T2008 T2006 arg2Of shown,have
R1250 T1915 T1931 arg1Of ligases,","
R1251 T2008 T2007 arg2Of shown,been
R1252 T1915 T1932 arg1Of ligases,[
R1253 T1915 T1936 arg1Of ligases,have
R1254 T2011 T2008 arg3Of regulate,shown
R1255 T2011 T2009 arg1Of regulate,to
R1256 T2011 T2010 arg1Of regulate,negatively
R1257 T2011 T2014 arg1Of regulate,by
R1258 T2013 T2011 arg2Of signaling,regulate
R1259 T2013 T2012 arg1Of signaling,RLR
R1260 T1915 T1937 arg1Of ligases,been
R1261 T1915 T1938 arg2Of ligases,shown
R1262 T1915 T1941 arg1Of ligases,promote
R1263 T2016 T2014 arg2Of removing,by
R1264 T2016 T2015 arg1Of removing,specifically
R1265 T2016 T2020 arg1Of removing,from
R1266 T1917 T1916 arg2Of E3s,(
R1267 T2019 T2016 arg2Of chains,removing
R1268 T2019 T2017 arg1Of chains,K63-linked
R1269 T2019 T2018 arg1Of chains,polyubiquitin
R1270 T1918 T1916 arg3Of ),(
R1271 T2023 T2020 arg2Of molecules,from
R1272 T2023 T2021 arg1Of molecules,several
R1273 T2023 T2022 arg1Of molecules,signaling
R1274 T1921 T1920 arg1Of as,such
R1275 T2029 T2026 arg1Of ligases,various
R1276 T2029 T2027 arg1Of ligases,K48-specific
R1277 T2029 T2028 arg1Of ligases,ubiquitin
R1278 T2029 T2030 arg1Of ligases,","
R1279 T2029 T2032 arg1Of ligases,as
R1280 T2029 T2051 arg1Of ligases,","
R1281 T2029 T2053 arg1Of ligases,inhibiting
R1282 T1922 T1923 arg1Of TRIM25,[
R1283 T2032 T2031 arg1Of as,such
R1284 T2033 T2034 arg1Of AIP4,[
R1285 T2033 T2037 arg1Of AIP4,and
R1286 T1922 T1926 arg1Of TRIM25,and
R1287 T1924 T1923 arg2Of 22,[
R1288 T2035 T2034 arg2Of 32,[
R1289 T2036 T2034 arg3Of ],[
R1290 T2037 T2032 arg2Of and,as
R1291 T1925 T1923 arg3Of ],[
R1292 T2040 T2039 arg2Of 33,[
R1293 T1926 T1921 arg2Of and,as
R1294 T2041 T2039 arg3Of ],[
R1295 T2042 T2038 arg1Of mark,TRIAD3A
R1296 T2042 T2039 arg1Of mark,[
R1297 T2042 T2043 arg1Of mark,respectively
R1298 T1927 T1926 arg2Of Riplet,and
R1299 T1927 T1928 arg1Of Riplet,[
R1300 T1929 T1928 arg2Of 23,[
R1301 T1930 T1928 arg3Of ],[
R1302 T2044 T2045 arg1Of MAVS,and
R1303 T2045 T2037 arg2Of and,and
R1304 T2045 T2042 arg1Of and,mark
R1305 T2045 T2047 arg1Of and,for
R1306 T1933 T1932 arg2Of 24,[
R1307 T2046 T2045 arg2Of TRAF3,and
R1308 T2050 T2047 arg2Of degradation,for
R1309 T2050 T2048 arg1Of degradation,proteasome
R1310 T2050 T2049 arg2Of degradation,mediated
R1311 T1934 T1932 arg3Of ],[
R1312 T2053 T2024 arg1Of inhibiting,Furthermore
R1313 T2053 T2025 arg1Of inhibiting,","
R1314 T2053 T2052 arg1Of inhibiting,thus
R1315 T1938 T1935 arg1Of shown,","
R1316 T2056 T2053 arg2Of signaling,inhibiting
R1317 T2056 T2054 arg1Of signaling,further
R1318 T2056 T2055 arg1Of signaling,downstream
R1319 T2060 T2059 arg1Of attachment,the
R1320 T2060 T2061 arg1Of attachment,of
R1321 T2060 T2065 arg1Of attachment,to
R1322 T2060 T2072 arg1Of attachment,by
R1323 T2060 T2091 arg1Of attachment,dampens
R1324 T1938 T1936 arg2Of shown,have
R1325 T2064 T2061 arg2Of chains,of
R1326 T2064 T2062 arg1Of chains,K48-specific
R1327 T2064 T2063 arg1Of chains,polyubiquitin
R1328 T1938 T1937 arg2Of shown,been
R1329 T2067 T2068 arg1Of IRF3,and
R1330 T1941 T1938 arg3Of promote,shown
R1331 T2069 T2068 arg2Of IRF7,and
R1332 T2071 T2065 arg2Of factors,to
R1333 T2071 T2066 arg1Of factors,the
R1334 T2071 T2067 arg1Of factors,IRF3
R1335 T2071 T2069 arg1Of factors,IRF7
R1336 T2071 T2070 arg1Of factors,transcription
R1337 T2073 T2072 arg2Of E3s,by
R1338 T2073 T2075 arg1Of E3s,as
R1339 T1941 T1939 arg1Of promote,to
R1340 T2075 T2074 arg1Of as,such
R1341 T1941 T1940 arg1Of promote,directly
R1342 T2076 T2077 arg1Of RAUL,[
R1343 T2076 T2080 arg1Of RAUL,","
R1344 T1943 T1941 arg2Of activation,promote
R1345 T2078 T2077 arg2Of 34,[
R1346 T2079 T2077 arg3Of ],[
R1347 T2080 T2085 arg1Of ",",and
R1348 T1943 T1942 arg1Of activation,RIG-I
R1349 T2081 T2080 arg2Of TRIM21,","
R1350 T2081 T2082 arg1Of TRIM21,[
R1351 T1945 T1944 arg2Of addition,In
R1352 T2083 T2082 arg2Of 35,[
R1353 T2084 T2082 arg3Of ],[
R1354 T2085 T2075 arg2Of and,as
R1356 T2086 T2085 arg2Of RBCK1,and
R1357 T2086 T2087 arg1Of RBCK1,[
R1358 T2088 T2087 arg2Of 36,[
R1359 T2089 T2087 arg3Of ],[
R1360 T2091 T2057 arg1Of dampens,Additionally
R1361 T2091 T2058 arg1Of dampens,","
R1362 T2091 T2090 arg1Of dampens,further
R1365 T2094 T2091 arg2Of transduction,dampens
R1366 T2094 T2092 arg1Of transduction,antiviral
R1367 T2094 T2093 arg1Of transduction,signal

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T1029 216-220 Antecedent denotes MAVS
T1028 272-277 Anaphor denotes which
R593 T1028 T1029 boundBy which,MAVS

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1079 1481-1486 Protein denotes RBCK1
T1078 1465-1471 Protein denotes TRIM21
T1077 1454-1458 Protein denotes RAUL
T1076 1412-1416 Protein denotes IRF7
T1075 1403-1407 Protein denotes IRF3
T1074 1241-1246 Protein denotes TRAF3
T1073 1232-1236 Protein denotes MAVS
T1072 1201-1208 Protein denotes TRIAD3A
T1071 1187-1191 Protein denotes AIP4
T1070 1021-1024 Protein denotes RLR
T1069 949-953 Protein denotes CYLD
T1068 938-942 Protein denotes DUBA
T1067 859-864 Protein denotes RIG-I
T1066 838-842 Protein denotes IRF3
T1065 796-801 Protein denotes TRAF3
T1064 775-780 Protein denotes TRAF6
T1063 699-704 Protein denotes RIG-I
T1062 644-650 Protein denotes Riplet
T1061 628-634 Protein denotes TRIM25
T1060 541-546 Protein denotes RIG-I
T1059 430-434 Protein denotes MAVS
T1058 247-253 Protein denotes Cardif
T1057 241-245 Protein denotes VISA
T1056 234-239 Protein denotes IPS-1
T1055 216-220 Protein denotes MAVS
T1054 172-177 Protein denotes RIG-I
T1053 0-5 Protein denotes RIG-I

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3667 1481-1486 http://www.uniprot.org/uniprot/Q9BYM8 denotes RBCK1
T3666 1241-1246 http://www.uniprot.org/uniprot/Q13114 denotes TRAF3
T3665 796-801 http://www.uniprot.org/uniprot/Q13114 denotes TRAF3
T3664 775-780 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6
T3659 1412-1416 http://www.uniprot.org/uniprot/Q92985 denotes IRF7
T3656 1403-1407 http://www.uniprot.org/uniprot/Q14653 denotes IRF3
T3655 838-842 http://www.uniprot.org/uniprot/Q14653 denotes IRF3

GO-BP

Id Subject Object Predicate Lexical cue
T1129 1271-1282 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T1128 1375-1388 http://purl.obolibrary.org/obo/GO_0000209 denotes polyubiquitin
T1127 1071-1084 http://purl.obolibrary.org/obo/GO_0000209 denotes polyubiquitin
T1126 897-921 http://purl.obolibrary.org/obo/GO_0004843 denotes deubiquitinating enzymes
T1125 1525-1537 http://purl.obolibrary.org/obo/GO_0009293 denotes transduction
T1124 563-575 http://purl.obolibrary.org/obo/GO_0009293 denotes transduction
T1123 547-575 http://purl.obolibrary.org/obo/GO_0090520 denotes mediated signal transduction
T1122 547-575 http://purl.obolibrary.org/obo/GO_0038008 denotes mediated signal transduction
T1121 547-575 http://purl.obolibrary.org/obo/GO_0007266 denotes mediated signal transduction
T1120 547-575 http://purl.obolibrary.org/obo/GO_0048015 denotes mediated signal transduction
T1119 547-575 http://purl.obolibrary.org/obo/GO_0019933 denotes mediated signal transduction
T1118 547-575 http://purl.obolibrary.org/obo/GO_0007265 denotes mediated signal transduction
T1117 547-575 http://purl.obolibrary.org/obo/GO_0007263 denotes mediated signal transduction
T1116 547-575 http://purl.obolibrary.org/obo/GO_0016601 denotes mediated signal transduction
T1102 1417-1430 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T1099 1518-1537 http://purl.obolibrary.org/obo/GO_0007165 denotes signal transduction
T1098 556-575 http://purl.obolibrary.org/obo/GO_0007165 denotes signal transduction
T1093 1319-1328 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T1092 1105-1114 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T1091 1025-1034 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-MF

Id Subject Object Predicate Lexical cue
T1181 897-921 http://purl.obolibrary.org/obo/GO_0004843 denotes deubiquitinating enzymes
T1178 1160-1169 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin
T1177 749-758 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin
T1176 595-604 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin
T1175 466-475 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin
T1174 143-150 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T1173 136-142 http://purl.obolibrary.org/obo/GO_0005488 denotes ligand
T1172 78-84 http://purl.obolibrary.org/obo/GO_0005488 denotes ligand

GO-CC

Id Subject Object Predicate Lexical cue
T1226 1251-1261 http://purl.obolibrary.org/obo/GO_0000502 denotes proteasome
T1225 374-387 http://purl.obolibrary.org/obo/GO_0044214 denotes transmembrane
T1224 374-387 http://purl.obolibrary.org/obo/GO_0016021 denotes transmembrane
T1223 346-354 http://purl.obolibrary.org/obo/GO_0016020 denotes membrane
T1222 332-354 http://purl.obolibrary.org/obo/GO_0031966 denotes mitochondrial membrane
T1221 326-354 http://purl.obolibrary.org/obo/GO_0031315 denotes outer mitochondrial membrane
T1220 326-354 http://purl.obolibrary.org/obo/GO_0031307 denotes outer mitochondrial membrane
T1219 326-354 http://purl.obolibrary.org/obo/GO_0031306 denotes outer mitochondrial membrane
T1218 326-354 http://purl.obolibrary.org/obo/GO_0005741 denotes outer mitochondrial membrane

sentences

Id Subject Object Predicate Lexical cue
T933 1330-1538 Sentence denotes Additionally, the attachment of K48-specific polyubiquitin chains to the IRF3 and IRF7 transcription factors by E3s such as RAUL [34], TRIM21 [35] and RBCK1 [36] further dampens antiviral signal transduction.
T932 1126-1329 Sentence denotes Furthermore, various K48-specific ubiquitin ligases, such as AIP4 [32] and TRIAD3A [33] mark respectively MAVS and TRAF3 for proteasome mediated degradation, thus inhibiting further downstream signaling.
T931 878-1125 Sentence denotes On the other hand, deubiquitinating enzymes (DUBs), such as DUBA [28], CYLD [29], [30] and OTUB1/2 [31] have been shown to negatively regulate RLR signaling by specifically removing K63-linked polyubiquitin chains from several signaling molecules.
T930 717-877 Sentence denotes In addition, well characterized ubiquitin ligases such as TRAF6 [25], [26] and TRAF3 [27] mediate respectively NF-κB and IRF3 activation upon RIG-I stimulation.
T929 582-716 Sentence denotes K63-specific ubiquitin ligases (E3s), such as TRIM25 [22] and Riplet [23], [24], have been shown to directly promote RIG-I activation.
T928 406-581 Sentence denotes Signaling downstream of MAVS requires the action of various ubiquitin modifying enzymes, which both positively and negatively regulate RIG-I mediated signal transduction [21].
T927 131-405 Sentence denotes Upon ligand binding, the CARD domains of RIG-I associate with the CARD domain of the MAVS (also termed IPS-1, VISA, Cardif) adaptor protein, which subsequently translocates to and inserts in the outer mitochondrial membrane via its C-terminal transmembrane domain [17]–[20].
T926 0-130 Sentence denotes RIG-I contains a C-terminal DExD/H box helicase domain, which is required for ligand recognition, and two N-terminal CARD domains.
T37 0-130 Sentence denotes RIG-I contains a C-terminal DExD/H box helicase domain, which is required for ligand recognition, and two N-terminal CARD domains.
T38 131-405 Sentence denotes Upon ligand binding, the CARD domains of RIG-I associate with the CARD domain of the MAVS (also termed IPS-1, VISA, Cardif) adaptor protein, which subsequently translocates to and inserts in the outer mitochondrial membrane via its C-terminal transmembrane domain [17]–[20].
T39 406-581 Sentence denotes Signaling downstream of MAVS requires the action of various ubiquitin modifying enzymes, which both positively and negatively regulate RIG-I mediated signal transduction [21].
T40 582-716 Sentence denotes K63-specific ubiquitin ligases (E3s), such as TRIM25 [22] and Riplet [23], [24], have been shown to directly promote RIG-I activation.
T41 717-877 Sentence denotes In addition, well characterized ubiquitin ligases such as TRAF6 [25], [26] and TRAF3 [27] mediate respectively NF-κB and IRF3 activation upon RIG-I stimulation.
T42 878-1125 Sentence denotes On the other hand, deubiquitinating enzymes (DUBs), such as DUBA [28], CYLD [29], [30] and OTUB1/2 [31] have been shown to negatively regulate RLR signaling by specifically removing K63-linked polyubiquitin chains from several signaling molecules.
T43 1126-1329 Sentence denotes Furthermore, various K48-specific ubiquitin ligases, such as AIP4 [32] and TRIAD3A [33] mark respectively MAVS and TRAF3 for proteasome mediated degradation, thus inhibiting further downstream signaling.
T44 1330-1538 Sentence denotes Additionally, the attachment of K48-specific polyubiquitin chains to the IRF3 and IRF7 transcription factors by E3s such as RAUL [34], TRIM21 [35] and RBCK1 [36] further dampens antiviral signal transduction.

simple1

Id Subject Object Predicate Lexical cue
T1332 1481-1486 Protein denotes RBCK1
T1331 1465-1471 Protein denotes TRIM21
T1330 1454-1458 Protein denotes RAUL
T1329 1412-1416 Protein denotes IRF7
T1328 1403-1407 Protein denotes IRF3
T1327 1241-1246 Protein denotes TRAF3
T1326 1232-1236 Protein denotes MAVS
T1325 1201-1208 Protein denotes TRIAD3A
T1324 1187-1191 Protein denotes AIP4
T1323 1021-1024 Protein denotes RLR
T1322 949-953 Protein denotes CYLD
T1321 938-942 Protein denotes DUBA
T1320 859-864 Protein denotes RIG-I
T1319 838-842 Protein denotes IRF3
T1318 796-801 Protein denotes TRAF3
T1317 775-780 Protein denotes TRAF6
T1316 699-704 Protein denotes RIG-I
T1315 644-650 Protein denotes Riplet
T1314 628-634 Protein denotes TRIM25
T1313 541-546 Protein denotes RIG-I
T1312 430-434 Protein denotes MAVS
T1311 247-253 Protein denotes Cardif
T1310 241-245 Protein denotes VISA
T1309 234-239 Protein denotes IPS-1
T1308 216-220 Protein denotes MAVS
T1307 172-177 Protein denotes RIG-I
T1306 0-5 Protein denotes RIG-I

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4160 1348-1358 Binding denotes attachment
T4159 1271-1282 Protein_catabolism denotes degradation
T4158 843-853 Positive_regulation denotes activation
T4157 705-715 Positive_regulation denotes activation
T4156 691-698 Positive_regulation denotes promote
T4155 291-303 Localization denotes translocates
T4154 178-187 Binding denotes associate
T4143 1481-1486 Protein denotes RBCK1
T4142 1465-1471 Protein denotes TRIM21
T4141 1454-1458 Protein denotes RAUL
T4140 1412-1416 Protein denotes IRF7
T4139 1403-1407 Protein denotes IRF3
T4138 1241-1246 Protein denotes TRAF3
T4137 1232-1236 Protein denotes MAVS
T4136 1201-1208 Protein denotes TRIAD3A
T4135 1187-1191 Protein denotes AIP4
T4134 1021-1024 Protein denotes RLR
T4133 949-953 Protein denotes CYLD
T4132 938-942 Protein denotes DUBA
T4131 859-864 Protein denotes RIG-I
T4130 838-842 Protein denotes IRF3
T4129 796-801 Protein denotes TRAF3
T4128 775-780 Protein denotes TRAF6
T4127 699-704 Protein denotes RIG-I
T4126 644-650 Protein denotes Riplet
T4125 628-634 Protein denotes TRIM25
T4124 541-546 Protein denotes RIG-I
T4123 430-434 Protein denotes MAVS
T4122 247-253 Protein denotes Cardif
T4121 241-245 Protein denotes VISA
T4120 234-239 Protein denotes IPS-1
T4119 216-220 Protein denotes MAVS
T4118 172-177 Protein denotes RIG-I
T4117 0-5 Protein denotes RIG-I
R3063 T4118 T4154 themeOf RIG-I,associate
R3070 T4119 T4154 themeOf MAVS,associate
R3072 T4122 T4155 themeOf Cardif,translocates
R3075 T4127 T4157 themeOf RIG-I,activation
R3082 T4130 T4158 themeOf IRF3,activation
R3097 T4157 T4156 themeOf activation,promote
R3085 T4137 T4159 themeOf MAVS,degradation
R3086 T4139 T4160 themeOf IRF3,attachment
R3087 T4140 T4160 themeOf IRF7,attachment
R3088 T4142 T4160 themeOf TRIM21,attachment
R3089 T4143 T4160 themeOf RBCK1,attachment

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3750 1348-1358 Binding denotes attachment
T3749 1271-1282 Protein_catabolism denotes degradation
T3748 1262-1270 Positive_regulation denotes mediated
T3747 843-853 Positive_regulation denotes activation
T3746 691-698 Positive_regulation denotes promote
T3745 705-715 Positive_regulation denotes activation
T3744 291-303 Localization denotes translocates
T3743 178-187 Binding denotes associate
T3732 1481-1486 Protein denotes RBCK1
T3731 1465-1471 Protein denotes TRIM21
T3730 1454-1458 Protein denotes RAUL
T3729 1412-1416 Protein denotes IRF7
T3728 1403-1407 Protein denotes IRF3
T3727 1241-1246 Protein denotes TRAF3
T3726 1232-1236 Protein denotes MAVS
T3725 1201-1208 Protein denotes TRIAD3A
T3724 1187-1191 Protein denotes AIP4
T3723 1021-1024 Protein denotes RLR
T3722 949-953 Protein denotes CYLD
T3721 938-942 Protein denotes DUBA
T3720 859-864 Protein denotes RIG-I
T3719 838-842 Protein denotes IRF3
T3718 796-801 Protein denotes TRAF3
T3717 775-780 Protein denotes TRAF6
T3716 699-704 Protein denotes RIG-I
T3715 644-650 Protein denotes Riplet
T3714 628-634 Protein denotes TRIM25
T3713 541-546 Protein denotes RIG-I
T3712 430-434 Protein denotes MAVS
T3711 247-253 Protein denotes Cardif
T3710 241-245 Protein denotes VISA
T3709 234-239 Protein denotes IPS-1
T3708 216-220 Protein denotes MAVS
T3707 172-177 Protein denotes RIG-I
T3706 0-5 Protein denotes RIG-I
R2961 T3726 T3749 themeOf MAVS,degradation
R2966 T3728 T3750 themeOf IRF3,attachment
R2967 T3729 T3750 themeOf IRF7,attachment
R2968 T3730 T3750 themeOf RAUL,attachment
R2969 T3731 T3750 themeOf TRIM21,attachment
R2971 T3732 T3750 themeOf RBCK1,attachment
R2991 T3749 T3748 themeOf degradation,mediated
R2945 T3707 T3743 themeOf RIG-I,associate
R2947 T3711 T3744 themeOf Cardif,translocates
R2952 T3716 T3745 themeOf RIG-I,activation
R2956 T3719 T3747 themeOf IRF3,activation
R2990 T3745 T3746 themeOf activation,promote

DLUT931

Id Subject Object Predicate Lexical cue
T3820 1262-1270 Positive_regulation denotes mediated
T3819 1271-1282 Protein_catabolism denotes degradation
T3818 1012-1020 Negative_regulation denotes regulate
T3817 807-814 Positive_regulation denotes mediate
T3816 843-853 Positive_regulation denotes activation
T3815 705-715 Positive_regulation denotes activation
T3814 532-540 Regulation denotes regulate
T3813 547-555 Positive_regulation denotes mediated
T3812 291-303 Localization denotes translocates
T3811 178-187 Binding denotes associate
T3800 1481-1486 Protein denotes RBCK1
T3799 1465-1471 Protein denotes TRIM21
T3798 1454-1458 Protein denotes RAUL
T3797 1412-1416 Protein denotes IRF7
T3796 1403-1407 Protein denotes IRF3
T3795 1241-1246 Protein denotes TRAF3
T3794 1232-1236 Protein denotes MAVS
T3793 1201-1208 Protein denotes TRIAD3A
T3792 1187-1191 Protein denotes AIP4
T3791 1021-1024 Protein denotes RLR
T3790 949-953 Protein denotes CYLD
T3789 938-942 Protein denotes DUBA
T3788 859-864 Protein denotes RIG-I
T3787 838-842 Protein denotes IRF3
T3786 796-801 Protein denotes TRAF3
T3785 775-780 Protein denotes TRAF6
T3784 699-704 Protein denotes RIG-I
T3783 644-650 Protein denotes Riplet
T3782 628-634 Protein denotes TRIM25
T3781 541-546 Protein denotes RIG-I
T3780 430-434 Protein denotes MAVS
T3779 247-253 Protein denotes Cardif
T3778 241-245 Protein denotes VISA
T3777 234-239 Protein denotes IPS-1
T3776 216-220 Protein denotes MAVS
T3775 172-177 Protein denotes RIG-I
T3774 0-5 Protein denotes RIG-I
R2965 T3795 T3819 themeOf TRAF3,degradation
R2980 T3813 T3814 themeOf mediated,regulate
R2981 T3816 T3817 themeOf activation,mediate
R2982 T3816 T3817 themeOf activation,mediate
R2985 T3819 T3820 themeOf degradation,mediated
R2986 T3819 T3820 themeOf degradation,mediated
R2949 T3775 T3811 themeOf RIG-I,associate
R2950 T3776 T3811 themeOf MAVS,associate
R2951 T3777 T3812 themeOf IPS-1,translocates
R2953 T3778 T3812 themeOf VISA,translocates
R2954 T3779 T3812 themeOf Cardif,translocates
R2955 T3781 T3813 themeOf RIG-I,mediated
R2957 T3784 T3815 themeOf RIG-I,activation
R2958 T3785 T3817 causeOf TRAF6,mediate
R2959 T3786 T3817 causeOf TRAF3,mediate
R2960 T3787 T3816 themeOf IRF3,activation
R2962 T3789 T3818 causeOf DUBA,regulate
R2963 T3791 T3818 themeOf RLR,regulate
R2964 T3794 T3819 themeOf MAVS,degradation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4360 136-151 Binding denotes ligand binding,
T4358 1021-1034 Positive_regulation denotes RLR signaling
T4357 938-1096 Regulation denotes DUBA [28], CYLD [29], [30] and OTUB1/2 [31] have been shown to negatively regulate RLR signaling by specifically removing K63-linked polyubiquitin chains from
T4355 838-853 Positive_regulation denotes IRF3 activation
T4354 1284-1328 Negative_regulation denotes thus inhibiting further downstream signaling
T4351 1219-1283 Regulation denotes respectively MAVS and TRAF3 for proteasome mediated degradation,
T4350 1219-1283 Regulation denotes respectively MAVS and TRAF3 for proteasome mediated degradation,
T4347 859-876 Positive_regulation denotes RIG-I stimulation
T4346 699-715 Positive_regulation denotes RIG-I activation
T4341 749-758 Entity denotes ubiquitin
T4340 949-964 Protein denotes CYLD [29], [30]
T4339 1481-1486 Protein denotes RBCK1
T4337 1160-1186 Protein denotes ubiquitin ligases, such as
T4336 1396-1444 Protein denotes to the IRF3 and IRF7 transcription factors by E3
T4332 938-947 Protein denotes DUBA [28]
T4331 1241-1261 Protein denotes TRAF3 for proteasome
T4330 15-54 Entity denotes a C-terminal DExD/H box helicase domain
T4328 796-806 Protein denotes TRAF3 [27]
T4327 359-373 Entity denotes its C-terminal
T4326 1201-1213 Protein denotes TRIAD3A [33]
T4325 102-116 Entity denotes two N-terminal
T4322 730-791 Protein denotes well characterized ubiquitin ligases such as TRAF6 [25], [26]
T4318 1251-1261 Entity denotes proteasome
T4317 859-864 Protein denotes RIG-I
T4314 241-245 Protein denotes VISA
T4313 1115-1124 Entity denotes molecules
T4300 212-270 Protein denotes the MAVS (also termed IPS-1, VISA, Cardif) adaptor protein
T4299 923-927 Protein denotes DUBs
T4297 541-546 Protein denotes RIG-I
T4292 1362-1374 Entity denotes K48-specific
T4288 466-475 Protein denotes ubiquitin
T4287 582-594 Entity denotes K63-specific
T4285 1060-1070 Entity denotes K63-linked
T4283 1071-1084 Protein denotes polyubiquitin
T4280 322-354 Entity denotes the outer mitochondrial membrane
T4279 39-47 Protein denotes helicase
T4270 1454-1463 Protein denotes RAUL [34]
T4266 1508-1517 Entity denotes antiviral
T4264 759-774 Protein denotes ligases such as
T4263 1021-1024 Protein denotes RLR
T4260 102-129 Entity denotes two N-terminal CARD domains
T4259 136-142 Entity denotes ligand
T4258 161-177 Entity denotes domains of RIG-I
T4246 78-84 Entity denotes ligand
T4243 699-704 Protein denotes RIG-I
T4238 234-246 Protein denotes IPS-1, VISA,
T4236 628-639 Protein denotes TRIM25 [22]
T4232 15-54 Entity denotes a C-terminal DExD/H box helicase domain
T4230 595-604 Protein denotes ubiquitin
T4228 234-253 Protein denotes IPS-1, VISA, Cardif
T4226 0-5 Protein denotes RIG-I
T4218 172-177 Protein denotes RIG-I
T4213 1232-1236 Protein denotes MAVS
T4209 15-54 Entity denotes a C-terminal DExD/H box helicase domain
T4205 969-981 Protein denotes OTUB1/2 [31]
T4171 430-434 Protein denotes MAVS
T4162 582-612 Protein denotes K63-specific ubiquitin ligases
T4161 1403-1407 Protein denotes IRF3
T4203 838-842 Protein denotes IRF3
T4196 1147-1159 Entity denotes K48-specific
T4193 1412-1416 Protein denotes IRF7
T4191 455-494 Protein denotes of various ubiquitin modifying enzymes,
T4189 1160-1169 Protein denotes ubiquitin
T4187 644-650 Protein denotes Riplet
T4183 1187-1196 Protein denotes AIP4 [32]
T4179 828-833 Protein denotes NF-κB
T4178 1465-1476 Protein denotes TRIM21 [35]
T4176 1375-1388 Protein denotes polyubiquitin
T4175 188-208 Entity denotes with the CARD domain
T4174 216-254 Protein denotes MAVS (also termed IPS-1, VISA, Cardif)
R3111 T4263 T4358 causeOf RLR,RLR signaling
R3112 T4358 T4357 themeOf RLR signaling,"DUBA [28], CYLD [29], [30] and OTUB1/2 [31] have been shown to negatively regulate RLR signaling by specifically removing K63-linked polyubiquitin chains from"
R3098 T4203 T4355 themeOf IRF3,IRF3 activation
R3099 T4213 T4350 causeOf MAVS,"respectively MAVS and TRAF3 for proteasome mediated degradation,"
R3104 T4317 T4347 themeOf RIG-I,RIG-I stimulation
R3105 T4331 T4351 causeOf TRAF3 for proteasome,"respectively MAVS and TRAF3 for proteasome mediated degradation,"
R3107 T4243 T4346 themeOf RIG-I,RIG-I activation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3063 563-575 NN denotes transduction
T3062 556-562 NN denotes signal
T3061 547-555 VBD denotes mediated
T3060 541-546 NNP denotes RIG-I
T3059 532-540 VB denotes regulate
T3058 521-531 RB denotes negatively
T3057 517-520 CC denotes and
T3056 506-516 RB denotes positively
T3055 501-505 DT denotes both
T3054 495-500 WDT denotes which
T3053 493-494 , denotes ,
T3052 486-493 NNS denotes enzymes
T3051 476-485 VBG denotes modifying
T3050 466-475 NN denotes ubiquitin
T3049 458-465 JJ denotes various
T3048 455-457 IN denotes of
T3047 448-454 NN denotes action
T3046 444-447 DT denotes the
T3045 435-443 VBZ denotes requires
T3044 430-434 NNP denotes MAVS
T3043 427-429 IN denotes of
T3042 416-426 JJ denotes downstream
T3041 406-415 VBG denotes Signaling
T3040 404-405 . denotes .
T3039 403-404 NNP denotes ]
T3038 401-403 CD denotes 20
T3037 400-401 NNP denotes [
T3036 398-399 NNP denotes ]
T3035 396-398 CD denotes 17
T3034 395-396 NNP denotes [
T3033 388-394 NN denotes domain
T3032 374-387 NN denotes transmembrane
T3031 363-373 JJ denotes C-terminal
T3030 359-362 PRP$ denotes its
T3029 355-358 IN denotes via
T3028 346-354 NN denotes membrane
T3027 332-345 JJ denotes mitochondrial
T3026 326-331 JJ denotes outer
T3025 322-325 DT denotes the
T3024 319-321 IN denotes in
T3023 311-318 NNS denotes inserts
T3022 307-310 CC denotes and
T3021 304-306 TO denotes to
T3020 291-303 VBZ denotes translocates
T3019 278-290 RB denotes subsequently
T3018 272-277 WDT denotes which
T3017 270-271 , denotes ,
T3016 263-270 NN denotes protein
T3015 255-262 NN denotes adaptor
T3014 253-254 -RRB- denotes )
T3013 247-253 NNP denotes Cardif
T3012 245-246 , denotes ,
T3011 241-245 NNP denotes VISA
T3010 239-240 , denotes ,
T3009 234-239 NNP denotes IPS-1
T3008 227-233 VBN denotes termed
T3007 222-226 RB denotes also
T3006 221-222 -LRB- denotes (
T3005 216-220 NNP denotes MAVS
T3004 212-215 DT denotes the
T3003 209-211 IN denotes of
T3002 202-208 NN denotes domain
T3001 197-201 NNP denotes CARD
T3000 193-196 DT denotes the
T2999 188-192 IN denotes with
T2998 178-187 NN denotes associate
T2997 172-177 NNP denotes RIG-I
T2996 169-171 IN denotes of
T2995 161-168 NNS denotes domains
T2994 156-160 NNP denotes CARD
T2993 152-155 DT denotes the
T2992 150-151 , denotes ,
T2991 143-150 JJ denotes binding
T2990 136-142 JJ denotes ligand
T2989 131-135 IN denotes Upon
T2988 129-130 . denotes .
T2987 122-129 NNS denotes domains
T2986 117-121 NNP denotes CARD
T2985 106-116 JJ denotes N-terminal
T2984 102-105 CD denotes two
T2983 98-101 CC denotes and
T2982 96-97 , denotes ,
T2981 85-96 NN denotes recognition
T2980 78-84 NN denotes ligand
T2979 74-77 IN denotes for
T2978 65-73 VBN denotes required
T2977 62-64 VBZ denotes is
T2976 56-61 WDT denotes which
T2975 54-55 , denotes ,
T2974 48-54 NN denotes domain
T2973 39-47 NN denotes helicase
T2972 35-38 NN denotes box
T2971 28-34 NNP denotes DExD/H
T2970 17-27 JJ denotes C-terminal
T2969 15-16 DT denotes a
T2968 6-14 VBZ denotes contains
T2967 0-5 NNP denotes RIG-I
T3253 1525-1537 NN denotes transduction
T3252 1518-1524 NN denotes signal
T3251 1508-1517 JJ denotes antiviral
T3250 1500-1507 NNS denotes dampens
T3249 1492-1499 JJ denotes further
T3248 1490-1491 NNP denotes ]
T3247 1488-1490 CD denotes 36
T3246 1487-1488 NNP denotes [
T3245 1481-1486 NNP denotes RBCK1
T3244 1477-1480 CC denotes and
T3243 1475-1476 NNP denotes ]
T3242 1473-1475 CD denotes 35
T3241 1472-1473 NNP denotes [
T3240 1465-1471 CD denotes TRIM21
T3239 1463-1464 , denotes ,
T3238 1462-1463 NNP denotes ]
T3237 1460-1462 CD denotes 34
T3236 1459-1460 NNP denotes [
T3235 1454-1458 NNP denotes RAUL
T3234 1451-1453 IN denotes as
T3233 1446-1450 JJ denotes such
T3232 1442-1445 NNS denotes E3s
T3231 1439-1441 IN denotes by
T3230 1431-1438 NNS denotes factors
T3229 1417-1430 NN denotes transcription
T3228 1412-1416 NNP denotes IRF7
T3227 1408-1411 CC denotes and
T3226 1403-1407 NNP denotes IRF3
T3225 1399-1402 DT denotes the
T3224 1396-1398 TO denotes to
T3223 1389-1395 NNS denotes chains
T3222 1375-1388 NN denotes polyubiquitin
T3221 1362-1374 JJ denotes K48-specific
T3220 1359-1361 IN denotes of
T3219 1348-1358 NN denotes attachment
T3218 1344-1347 DT denotes the
T3217 1342-1343 , denotes ,
T3216 1330-1342 RB denotes Additionally
T3215 1328-1329 . denotes .
T3214 1319-1328 VBG denotes signaling
T3213 1308-1318 JJ denotes downstream
T3212 1300-1307 JJ denotes further
T3211 1289-1299 VBG denotes inhibiting
T3210 1284-1288 RB denotes thus
T3209 1282-1283 , denotes ,
T3208 1271-1282 NN denotes degradation
T3207 1262-1270 JJ denotes mediated
T3206 1251-1261 JJ denotes proteasome
T3205 1247-1250 IN denotes for
T3204 1241-1246 NNP denotes TRAF3
T3203 1237-1240 CC denotes and
T3202 1232-1236 NNP denotes MAVS
T3201 1219-1231 RB denotes respectively
T3200 1214-1218 NN denotes mark
T3199 1212-1213 NNP denotes ]
T3198 1210-1212 CD denotes 33
T3197 1209-1210 NNP denotes [
T3196 1201-1208 NNP denotes TRIAD3A
T3195 1197-1200 CC denotes and
T3194 1195-1196 NNP denotes ]
T3193 1193-1195 CD denotes 32
T3192 1192-1193 NNP denotes [
T3191 1187-1191 NNP denotes AIP4
T3190 1184-1186 IN denotes as
T3189 1179-1183 JJ denotes such
T3188 1177-1178 , denotes ,
T3187 1170-1177 NNS denotes ligases
T3186 1160-1169 NN denotes ubiquitin
T3185 1147-1159 JJ denotes K48-specific
T3184 1139-1146 JJ denotes various
T3183 1137-1138 , denotes ,
T3182 1126-1137 RB denotes Furthermore
T3181 1124-1125 . denotes .
T3180 1115-1124 NNS denotes molecules
T3179 1105-1114 VBG denotes signaling
T3178 1097-1104 JJ denotes several
T3177 1092-1096 IN denotes from
T3176 1085-1091 NNS denotes chains
T3175 1071-1084 NN denotes polyubiquitin
T3174 1060-1070 JJ denotes K63-linked
T3173 1051-1059 VBG denotes removing
T3172 1038-1050 RB denotes specifically
T3171 1035-1037 IN denotes by
T3170 1025-1034 VBG denotes signaling
T3169 1021-1024 NNP denotes RLR
T3168 1012-1020 VB denotes regulate
T3167 1001-1011 RB denotes negatively
T3166 998-1000 TO denotes to
T3165 992-997 VBN denotes shown
T3164 987-991 VBN denotes been
T3163 982-986 VBP denotes have
T3162 980-981 NNP denotes ]
T3161 978-980 CD denotes 31
T3160 977-978 NNP denotes [
T3159 969-976 NNP denotes OTUB1/2
T3158 965-968 CC denotes and
T3157 963-964 NNP denotes ]
T3156 961-963 CD denotes 30
T3155 960-961 NNP denotes [
T3154 958-959 , denotes ,
T3153 957-958 NNP denotes ]
T3152 955-957 CD denotes 29
T3151 954-955 NNP denotes [
T3150 949-953 NNP denotes CYLD
T3149 947-948 , denotes ,
T3148 946-947 NNP denotes ]
T3147 944-946 CD denotes 28
T3146 943-944 NNP denotes [
T3145 938-942 NNP denotes DUBA
T3144 935-937 IN denotes as
T3143 930-934 JJ denotes such
T3142 928-929 , denotes ,
T3141 927-928 -RRB- denotes )
T3140 923-927 NNS denotes DUBs
T3139 922-923 -LRB- denotes (
T3138 914-921 NNS denotes enzymes
T3137 897-913 VBG denotes deubiquitinating
T3136 895-896 , denotes ,
T3135 891-895 NN denotes hand
T3134 885-890 JJ denotes other
T3133 881-884 DT denotes the
T3132 878-880 IN denotes On
T3131 876-877 . denotes .
T3130 865-876 NN denotes stimulation
T3129 859-864 NNP denotes RIG-I
T3128 854-858 IN denotes upon
T3127 843-853 NN denotes activation
T3126 838-842 JJ denotes IRF3
T3125 834-837 CC denotes and
T3124 828-833 JJ denotes NF-κB
T3123 815-827 RB denotes respectively
T3122 807-814 VB denotes mediate
T3121 805-806 NNP denotes ]
T3120 803-805 CD denotes 27
T3119 802-803 NNP denotes [
T3118 796-801 NNP denotes TRAF3
T3117 792-795 CC denotes and
T3116 790-791 NNP denotes ]
T3115 788-790 CD denotes 26
T3114 787-788 NNP denotes [
T3113 785-786 , denotes ,
T3112 784-785 NNP denotes ]
T3111 782-784 CD denotes 25
T3110 781-782 NNP denotes [
T3109 775-780 CD denotes TRAF6
T3108 772-774 IN denotes as
T3107 767-771 JJ denotes such
T3106 759-766 NNS denotes ligases
T3105 749-758 NN denotes ubiquitin
T3104 735-748 VBD denotes characterized
T3103 730-734 RB denotes well
T3102 728-729 , denotes ,
T3101 720-728 NN denotes addition
T3100 717-719 IN denotes In
T3099 715-716 . denotes .
T3098 705-715 NN denotes activation
T3097 699-704 NNP denotes RIG-I
T3096 691-698 VB denotes promote
T3095 682-690 RB denotes directly
T3094 679-681 TO denotes to
T3093 673-678 VBN denotes shown
T3092 668-672 VBN denotes been
T3091 663-667 VBP denotes have
T3090 661-662 , denotes ,
T3089 660-661 NNP denotes ]
T3088 658-660 CD denotes 24
T3087 657-658 NNP denotes [
T3086 655-656 , denotes ,
T3085 654-655 NNP denotes ]
T3084 652-654 CD denotes 23
T3083 651-652 NNP denotes [
T3082 644-650 NNP denotes Riplet
T3081 640-643 CC denotes and
T3080 638-639 NNP denotes ]
T3079 636-638 CD denotes 22
T3078 635-636 NNP denotes [
T3077 628-634 CD denotes TRIM25
T3076 625-627 IN denotes as
T3075 620-624 JJ denotes such
T3074 618-619 , denotes ,
T3073 617-618 -RRB- denotes )
T3072 614-617 NNS denotes E3s
T3071 613-614 -LRB- denotes (
T3070 605-612 NNS denotes ligases
T3069 595-604 NN denotes ubiquitin
T3068 582-594 JJ denotes K63-specific
T3067 580-581 . denotes .
T3066 579-580 NNP denotes ]
T3065 577-579 CD denotes 21
T3064 576-577 NNP denotes [
T3254 1537-1538 . denotes .
R2234 T2967 T2968 nsubj RIG-I,contains
R2236 T2968 T2968 ROOT contains,contains
R2237 T2969 T2974 det a,domain
R2238 T2970 T2972 amod C-terminal,box
R2240 T2971 T2972 compound DExD/H,box
R2241 T2972 T2974 compound box,domain
R2242 T2973 T2974 compound helicase,domain
R2243 T2974 T2968 dobj domain,contains
R2246 T2975 T2974 punct ",",domain
R2248 T2976 T2978 nsubjpass which,required
R2249 T2977 T2978 auxpass is,required
R2250 T2978 T2974 relcl required,domain
R2252 T2979 T2978 prep for,required
R2253 T2980 T2981 compound ligand,recognition
R2254 T2981 T2979 pobj recognition,for
R2256 T2982 T2974 punct ",",domain
R2257 T2983 T2974 cc and,domain
R2258 T2984 T2987 nummod two,domains
R2260 T2985 T2986 compound N-terminal,CARD
R2261 T2986 T2987 compound CARD,domains
R2262 T2987 T2974 conj domains,domain
R2263 T2988 T2968 punct .,contains
R2265 T2989 T2989 ROOT Upon,Upon
R2266 T2990 T2991 compound ligand,binding
R2267 T2991 T2989 pobj binding,Upon
R2269 T2992 T2995 punct ",",domains
R2270 T2993 T2995 det the,domains
R2271 T2994 T2995 compound CARD,domains
R2273 T2995 T2991 conj domains,binding
R2274 T2996 T2995 prep of,domains
R2275 T2997 T2998 compound RIG-I,associate
R2277 T2998 T2996 pobj associate,of
R2278 T2999 T2998 prep with,associate
R2279 T3000 T3002 det the,domain
R2281 T3001 T3002 compound CARD,domain
R2282 T3002 T2999 pobj domain,with
R2283 T3003 T3002 prep of,domain
R2284 T3004 T3005 det the,MAVS
R2285 T3005 T3003 pobj MAVS,of
R2286 T3006 T3008 punct (,termed
R2288 T3007 T3008 advmod also,termed
R2289 T3008 T3005 parataxis termed,MAVS
R2290 T3009 T3008 oprd IPS-1,termed
R2292 T3010 T3009 punct ",",IPS-1
R2293 T3011 T3016 nmod VISA,protein
R2294 T3012 T3011 punct ",",VISA
R2296 T3013 T3011 appos Cardif,VISA
R2297 T3014 T3016 punct ),protein
R2298 T3015 T3016 compound adaptor,protein
R2299 T3031 T3033 amod C-terminal,domain
R2300 T3016 T3009 appos protein,IPS-1
R2301 T3017 T3016 punct ",",protein
R2302 T3018 T3020 nsubj which,translocates
R2303 T3019 T3020 advmod subsequently,translocates
R2304 T3020 T3016 relcl translocates,protein
R2305 T3021 T3020 prep to,translocates
R2306 T3032 T3033 compound transmembrane,domain
R2307 T3022 T3020 cc and,translocates
R2308 T3023 T3020 conj inserts,translocates
R2309 T3024 T3023 prep in,inserts
R2310 T3033 T3029 pobj domain,via
R2311 T3025 T3028 det the,membrane
R2312 T3034 T3036 nmod [,]
R2313 T3026 T3028 amod outer,membrane
R2314 T3035 T3036 nummod 17,]
R2315 T3027 T3028 amod mitochondrial,membrane
R2316 T3028 T3024 pobj membrane,in
R2317 T3029 T3023 prep via,inserts
R2318 T3036 T3023 conj ],inserts
R2319 T3030 T3033 poss its,domain
R2320 T3037 T3036 appos [,]
R2321 T3038 T3039 nummod 20,]
R2322 T3039 T3036 conj ],]
R2323 T3128 T3122 prep upon,mediate
R2324 T3040 T2989 punct .,Upon
R2325 T3129 T3130 compound RIG-I,stimulation
R2326 T3130 T3128 pobj stimulation,upon
R2327 T3131 T3104 punct .,characterized
R2328 T3041 T3045 csubj Signaling,requires
R2329 T3132 T3165 prep On,shown
R2330 T3133 T3135 det the,hand
R2331 T3042 T3041 advmod downstream,Signaling
R2332 T3134 T3135 amod other,hand
R2333 T3135 T3132 pobj hand,On
R2334 T3136 T3165 punct ",",shown
R2335 T3137 T3165 advcl deubiquitinating,shown
R2336 T3138 T3137 dobj enzymes,deubiquitinating
R2337 T3139 T3138 punct (,enzymes
R2338 T3043 T3042 prep of,downstream
R2339 T3140 T3138 appos DUBs,enzymes
R2340 T3141 T3138 punct ),enzymes
R2341 T3142 T3138 punct ",",enzymes
R2342 T3044 T3043 pobj MAVS,of
R2343 T3143 T3144 amod such,as
R2344 T3144 T3138 prep as,enzymes
R2345 T3145 T3146 compound DUBA,[
R2346 T3045 T3045 ROOT requires,requires
R2347 T3146 T3144 pobj [,as
R2348 T3147 T3148 nummod 28,]
R2349 T3046 T3047 det the,action
R2350 T3148 T3146 conj ],[
R2351 T3149 T3148 punct ",",]
R2352 T3150 T3151 compound CYLD,[
R2353 T3047 T3045 dobj action,requires
R2354 T3151 T3148 conj [,]
R2355 T3152 T3153 compound 29,]
R2356 T3153 T3151 conj ],[
R2357 T3048 T3047 prep of,action
R2358 T3154 T3153 punct ",",]
R2359 T3155 T3153 conj [,]
R2360 T3156 T3157 nummod 30,]
R2361 T3049 T3052 amod various,enzymes
R2362 T3157 T3153 conj ],]
R2363 T3158 T3157 cc and,]
R2364 T3159 T3160 compound OTUB1/2,[
R2365 T3050 T3051 compound ubiquitin,modifying
R2366 T3160 T3157 conj [,]
R2367 T3161 T3162 nummod 31,]
R2368 T3162 T3157 conj ],]
R2369 T3051 T3052 amod modifying,enzymes
R2370 T3163 T3165 aux have,shown
R2371 T3164 T3165 auxpass been,shown
R2372 T3165 T3165 ROOT shown,shown
R2373 T3052 T3048 pobj enzymes,of
R2374 T3166 T3168 aux to,regulate
R2375 T3167 T3168 advmod negatively,regulate
R2376 T3053 T3052 punct ",",enzymes
R2377 T3168 T3165 xcomp regulate,shown
R2378 T3169 T3168 dobj RLR,regulate
R2379 T3170 T3165 advcl signaling,shown
R2380 T3054 T3059 nsubj which,regulate
R2381 T3171 T3170 prep by,signaling
R2382 T3172 T3173 advmod specifically,removing
R2383 T3173 T3171 pcomp removing,by
R2384 T3174 T3176 amod K63-linked,chains
R2385 T3175 T3176 compound polyubiquitin,chains
R2386 T3176 T3173 dobj chains,removing
R2387 T3055 T3056 preconj both,positively
R2388 T3177 T3173 prep from,removing
R2389 T3178 T3180 amod several,molecules
R2390 T3179 T3180 amod signaling,molecules
R2391 T3056 T3059 advmod positively,regulate
R2392 T3180 T3177 pobj molecules,from
R2393 T3181 T3165 punct .,shown
R2394 T3057 T3056 cc and,positively
R2395 T3058 T3056 conj negatively,positively
R2396 T3182 T3211 advmod Furthermore,inhibiting
R2397 T3059 T3052 relcl regulate,enzymes
R2398 T3183 T3211 punct ",",inhibiting
R2399 T3184 T3187 amod various,ligases
R2400 T3185 T3187 amod K48-specific,ligases
R2401 T3186 T3187 compound ubiquitin,ligases
R2402 T3060 T3059 dobj RIG-I,regulate
R2403 T3187 T3211 nsubj ligases,inhibiting
R2404 T3188 T3187 punct ",",ligases
R2405 T3189 T3190 amod such,as
R2406 T3061 T3063 amod mediated,transduction
R2407 T3190 T3187 prep as,ligases
R2408 T3191 T3192 compound AIP4,[
R2409 T3062 T3063 compound signal,transduction
R2410 T3192 T3190 pobj [,as
R2411 T3193 T3194 nummod 32,]
R2412 T3194 T3192 conj ],[
R2413 T3063 T3064 compound transduction,[
R2414 T3195 T3194 cc and,]
R2415 T3196 T3197 compound TRIAD3A,[
R2416 T3197 T3194 conj [,]
R2417 T3064 T3045 dobj [,requires
R2418 T3198 T3199 nummod 33,]
R2419 T3199 T3200 compound ],mark
R2420 T3200 T3192 conj mark,[
R2421 T3065 T3066 nummod 21,]
R2422 T3201 T3202 advmod respectively,MAVS
R2423 T3202 T3200 dobj MAVS,mark
R2424 T3203 T3202 cc and,MAVS
R2425 T3066 T3064 appos ],[
R2426 T3204 T3202 conj TRAF3,MAVS
R2427 T3205 T3200 prep for,mark
R2428 T3067 T3045 punct .,requires
R2429 T3206 T3208 amod proteasome,degradation
R2430 T3207 T3208 amod mediated,degradation
R2431 T3208 T3205 pobj degradation,for
R2432 T3209 T3187 punct ",",ligases
R2433 T3210 T3211 advmod thus,inhibiting
R2434 T3211 T3211 ROOT inhibiting,inhibiting
R2435 T3068 T3070 nmod K63-specific,ligases
R2436 T3212 T3213 advmod further,downstream
R2437 T3213 T3214 amod downstream,signaling
R2438 T3214 T3211 dobj signaling,inhibiting
R2439 T3215 T3211 punct .,inhibiting
R2440 T3069 T3070 compound ubiquitin,ligases
R2441 T3216 T3219 advmod Additionally,attachment
R2442 T3217 T3219 punct ",",attachment
R2443 T3218 T3219 det the,attachment
R2444 T3070 T3093 nsubjpass ligases,shown
R2445 T3219 T3219 ROOT attachment,attachment
R2446 T3220 T3219 prep of,attachment
R2447 T3221 T3223 amod K48-specific,chains
R2448 T3071 T3072 punct (,E3s
R2449 T3222 T3223 compound polyubiquitin,chains
R2450 T3223 T3220 pobj chains,of
R2451 T3224 T3219 prep to,attachment
R2452 T3072 T3070 appos E3s,ligases
R2453 T3073 T3070 punct ),ligases
R2454 T3074 T3070 punct ",",ligases
R2455 T3225 T3226 det the,IRF3
R2456 T3075 T3076 amod such,as
R2457 T3226 T3224 pobj IRF3,to
R2458 T3227 T3226 cc and,IRF3
R2459 T3076 T3070 prep as,ligases
R2460 T3228 T3226 conj IRF7,IRF3
R2461 T3229 T3230 compound transcription,factors
R2462 T3230 T3219 conj factors,attachment
R2463 T3077 T3080 nummod TRIM25,]
R2464 T3231 T3219 prep by,attachment
R2465 T3232 T3231 pobj E3s,by
R2466 T3233 T3234 amod such,as
R2467 T3078 T3080 nmod [,]
R2468 T3234 T3232 prep as,E3s
R2469 T3235 T3236 compound RAUL,[
R2470 T3079 T3080 nummod 22,]
R2471 T3236 T3234 pobj [,as
R2472 T3237 T3238 nummod 34,]
R2473 T3238 T3236 conj ],[
R2474 T3080 T3076 pobj ],as
R2475 T3239 T3238 punct ",",]
R2476 T3240 T3243 nummod TRIM21,]
R2477 T3081 T3080 cc and,]
R2478 T3241 T3243 nmod [,]
R2479 T3242 T3243 nummod 35,]
R2480 T3243 T3238 conj ],]
R2481 T3082 T3083 compound Riplet,[
R2482 T3244 T3243 cc and,]
R2483 T3245 T3246 compound RBCK1,[
R2484 T3246 T3243 conj [,]
R2485 T3247 T3248 nummod 36,]
R2486 T3248 T3253 nmod ],transduction
R2487 T3249 T3253 amod further,transduction
R2488 T3083 T3080 conj [,]
R2489 T3250 T3253 amod dampens,transduction
R2490 T3251 T3253 amod antiviral,transduction
R2491 T3252 T3253 compound signal,transduction
R2492 T3084 T3085 nummod 23,]
R2493 T3253 T3236 appos transduction,[
R2494 T3254 T3219 punct .,attachment
R2495 T3085 T3083 conj ],[
R2500 T3086 T3085 punct ",",]
R2503 T3087 T3089 nmod [,]
R2504 T3088 T3089 nummod 24,]
R2507 T3089 T3085 conj ],]
R2511 T3090 T3093 punct ",",shown
R2515 T3091 T3093 aux have,shown
R2517 T3092 T3093 auxpass been,shown
R2521 T3093 T3093 ROOT shown,shown
R2525 T3094 T3096 aux to,promote
R2529 T3095 T3096 advmod directly,promote
R2533 T3096 T3093 xcomp promote,shown
R2540 T3097 T3098 compound RIG-I,activation
R2544 T3098 T3096 dobj activation,promote
R2547 T3099 T3093 punct .,shown
R2552 T3100 T3104 prep In,characterized
R2555 T3101 T3100 pobj addition,In
R2559 T3102 T3104 punct ",",characterized
R2563 T3103 T3104 advmod well,characterized
R2567 T3104 T3104 ROOT characterized,characterized
R2571 T3105 T3106 compound ubiquitin,ligases
R2575 T3106 T3104 dobj ligases,characterized
R2578 T3107 T3108 amod such,as
R2581 T3108 T3104 prep as,characterized
R2583 T3109 T3108 pobj TRAF6,as
R2587 T3110 T3112 nmod [,]
R2588 T3111 T3112 nummod 25,]
R2591 T3112 T3122 nsubj ],mediate
R2594 T3113 T3112 punct ",",]
R2598 T3114 T3112 conj [,]
R2602 T3115 T3116 nummod 26,]
R2605 T3116 T3112 conj ],]
R2610 T3117 T3116 cc and,]
R2613 T3118 T3119 compound TRAF3,[
R2614 T3119 T3116 conj [,]
R2616 T3120 T3121 nummod 27,]
R2617 T3121 T3122 npadvmod ],mediate
R2618 T3122 T3104 advcl mediate,characterized
R2621 T3123 T3124 advmod respectively,NF-κB
R2624 T3124 T3127 amod NF-κB,activation
R2628 T3125 T3124 cc and,NF-κB
R2632 T3126 T3124 conj IRF3,NF-κB
R2638 T3127 T3122 dobj activation,mediate

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3968 1481-1486 Protein denotes RBCK1
T3967 1412-1438 Protein denotes IRF7 transcription factors
T3966 1403-1407 Protein denotes IRF3
T3965 1362-1395 Protein denotes K48-specific polyubiquitin chains
T3964 1271-1282 Protein_catabolism denotes degradation
T3963 1271-1282 Protein_catabolism denotes degradation
T3962 1241-1246 Protein denotes TRAF3
T3961 1147-1177 Protein denotes K48-specific ubiquitin ligases
T3960 1071-1084 Protein denotes polyubiquitin
T3959 807-814 Positive_regulation denotes mediate
T3958 807-814 Positive_regulation denotes mediate
T3957 843-853 Positive_regulation denotes activation
T3956 843-853 Positive_regulation denotes activation
T3946 582-612 Protein denotes K63-specific ubiquitin ligases
T3945 541-546 Protein denotes RIG-I
T3944 466-475 Protein denotes ubiquitin
T3943 430-434 Protein denotes MAVS
T3942 178-187 Binding denotes associate
T3941 143-150 Binding denotes binding
T3940 143-150 Binding denotes binding
T3939 143-150 Binding denotes binding
T3938 197-208 Protein denotes CARD domain
T3937 172-177 Protein denotes RIG-I
T3936 156-168 Protein denotes CARD domains
T3935 28-47 Protein denotes DExD/H box helicase
T3955 859-864 Protein denotes RIG-I
T3954 838-842 Protein denotes IRF3
T3953 828-833 Protein denotes NF-κB
T3952 749-766 Protein denotes ubiquitin ligases
T3951 705-715 Positive_regulation denotes activation
T3950 691-698 Gene_expression denotes promote
T3949 691-698 Gene_expression denotes promote
T3948 699-704 Protein denotes RIG-I
T3947 614-617 Protein denotes E3s
R3013 T3936 T3939 themeOf CARD domains,binding
R3014 T3936 T3941 themeOf CARD domains,binding
R3015 T3937 T3940 themeOf RIG-I,binding
R3016 T3937 T3941 themeOf RIG-I,binding
R3017 T3937 T3942 themeOf RIG-I,associate
R3018 T3938 T3942 themeOf CARD domain,associate
R3022 T3946 T3949 themeOf K63-specific ubiquitin ligases,promote
R3023 T3947 T3950 themeOf E3s,promote
R3025 T3948 T3951 themeOf RIG-I,activation
R3028 T3953 T3956 themeOf NF-κB,activation
R3029 T3954 T3957 themeOf IRF3,activation
R3030 T3956 T3958 themeOf activation,mediate
R3031 T3957 T3959 themeOf activation,mediate
R3032 T3958 T3952 Cause mediate,ubiquitin ligases
R3033 T3959 T3952 Cause mediate,ubiquitin ligases
R3034 T3961 T3963 themeOf K48-specific ubiquitin ligases,degradation
R3035 T3962 T3964 themeOf TRAF3,degradation

testone

Id Subject Object Predicate Lexical cue
T782 1271-1282 Protein_catabolism denotes degradation
T781 843-853 Positive_regulation denotes activation
T780 388-394 Entity denotes domain
T779 291-303 Localization denotes translocates
T778 202-208 Entity denotes domain
T777 178-187 Binding denotes associate
T776 161-168 Entity denotes domains
T775 143-150 Binding denotes binding
T765 1481-1486 Protein denotes RBCK1
T764 1465-1471 Protein denotes TRIM21
T763 1454-1458 Protein denotes RAUL
T762 1412-1416 Protein denotes IRF7
T761 1403-1407 Protein denotes IRF3
T760 1241-1246 Protein denotes TRAF3
T759 1232-1236 Protein denotes MAVS
T758 1201-1208 Protein denotes TRIAD3A
T757 1187-1191 Protein denotes AIP4
T756 1021-1024 Protein denotes RLR
T755 949-953 Protein denotes CYLD
T754 938-942 Protein denotes DUBA
T753 859-864 Protein denotes RIG-I
T752 838-842 Protein denotes IRF3
T751 796-801 Protein denotes TRAF3
T750 775-780 Protein denotes TRAF6
T749 699-704 Protein denotes RIG-I
T748 644-650 Protein denotes Riplet
T747 628-634 Protein denotes TRIM25
T746 541-546 Protein denotes RIG-I
T745 430-434 Protein denotes MAVS
T744 247-253 Protein denotes Cardif
T743 241-245 Protein denotes VISA
T742 234-239 Protein denotes IPS-1
T741 216-220 Protein denotes MAVS
T740 172-177 Protein denotes RIG-I
T739 0-5 Protein denotes RIG-I
R526 T752 T781 themeOf IRF3,activation
R523 T742 T779 themeOf IPS-1,translocates
R524 T743 T779 themeOf VISA,translocates
R525 T744 T779 themeOf Cardif,translocates
R527 T753 T781 causeOf RIG-I,activation
R528 T757 T782 themeOf AIP4,degradation
R529 T758 T782 themeOf TRIAD3A,degradation
R530 T759 T782 themeOf MAVS,degradation