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PMC:329117 / 17402-17629 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T4947 0-227 sentence denotes In these assays, we measure transcript level per genomic copy of the gene by comparing how well a gene-specific primer pair amplifies reverse-transcribed RNA, relative to a standard curve of amplification of mouse genomic DNA.
T4948 1-3 IN denotes In
T4949 21-28 VBP denotes measure
T4950 4-9 DT denotes these
T4951 10-16 NNS denotes assays
T4952 16-18 , denotes ,
T4953 18-20 PRP denotes we
T4954 29-39 NN denotes transcript
T4955 40-45 NN denotes level
T4956 46-49 IN denotes per
T4957 50-57 JJ denotes genomic
T4958 58-62 NN denotes copy
T4959 63-65 IN denotes of
T4960 66-69 DT denotes the
T4961 70-74 NN denotes gene
T4962 75-77 IN denotes by
T4963 78-87 VBG denotes comparing
T4964 88-91 WRB denotes how
T4965 92-96 RB denotes well
T4966 125-134 VBZ denotes amplifies
T4967 97-98 DT denotes a
T4968 120-124 NN denotes pair
T4969 99-103 NN denotes gene
T4970 104-112 JJ denotes specific
T4971 103-104 HYPH denotes -
T4972 113-119 NN denotes primer
T4973 135-142 JJ denotes reverse
T4974 143-154 VBN denotes transcribed
T4975 142-143 HYPH denotes -
T4976 155-158 NN denotes RNA
T4977 158-160 , denotes ,
T4978 160-168 JJ denotes relative
T4979 169-171 IN denotes to
T4980 172-173 DT denotes a
T4981 183-188 NN denotes curve
T4982 174-182 JJ denotes standard
T4983 189-191 IN denotes of
T4984 192-205 NN denotes amplification
T4985 206-208 IN denotes of
T4986 209-214 NN denotes mouse
T4987 223-226 NN denotes DNA
T4988 215-222 JJ denotes genomic
T4989 226-227 . denotes .
R2898 T4948 T4949 prep In,measure
R2899 T4950 T4951 det these,assays
R2900 T4951 T4948 pobj assays,In
R2901 T4952 T4949 punct ", ",measure
R2902 T4953 T4949 nsubj we,measure
R2903 T4954 T4955 compound transcript,level
R2904 T4955 T4949 dobj level,measure
R2905 T4956 T4955 prep per,level
R2906 T4957 T4958 amod genomic,copy
R2907 T4958 T4956 pobj copy,per
R2908 T4959 T4958 prep of,copy
R2909 T4960 T4961 det the,gene
R2910 T4961 T4959 pobj gene,of
R2911 T4962 T4949 prep by,measure
R2912 T4963 T4962 pcomp comparing,by
R2913 T4964 T4965 advmod how,well
R2914 T4965 T4966 advmod well,amplifies
R2915 T4966 T4963 ccomp amplifies,comparing
R2916 T4967 T4968 det a,pair
R2917 T4968 T4966 nsubj pair,amplifies
R2918 T4969 T4970 npadvmod gene,specific
R2919 T4970 T4968 amod specific,pair
R2920 T4971 T4970 punct -,specific
R2921 T4972 T4968 compound primer,pair
R2922 T4973 T4974 amod reverse,transcribed
R2923 T4974 T4976 amod transcribed,RNA
R2924 T4975 T4974 punct -,transcribed
R2925 T4976 T4966 dobj RNA,amplifies
R2926 T4977 T4963 punct ", ",comparing
R2927 T4978 T4963 advcl relative,comparing
R2928 T4979 T4978 prep to,relative
R2929 T4980 T4981 det a,curve
R2930 T4981 T4979 pobj curve,to
R2931 T4982 T4981 amod standard,curve
R2932 T4983 T4981 prep of,curve
R2933 T4984 T4983 pobj amplification,of
R2934 T4985 T4984 prep of,amplification
R2935 T4986 T4987 nmod mouse,DNA
R2936 T4987 T4985 pobj DNA,of
R2937 T4988 T4987 amod genomic,DNA
R2938 T4989 T4949 punct .,measure

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4512 29-39 SO_EXT:0000673 denotes transcript
T4513 50-57 SO_EXT:0001026 denotes genomic
T4514 58-62 SO_EXT:sequence_copy_entity denotes copy
T4515 70-74 SO_EXT:0000704 denotes gene
T4516 99-103 SO_EXT:0000704 denotes gene
T4517 113-119 SO_EXT:0000112 denotes primer
T4518 135-154 GO:0001171 denotes reverse-transcribed
T4519 155-158 CHEBI_SO_EXT:RNA denotes RNA
T4520 192-208 _FRAGMENT denotes amplification of
T4521 223-226 GO:0006277 denotes DNA
T4522 209-214 NCBITaxon:10088 denotes mouse
T4523 215-226 SO_EXT:genomic_DNA denotes genomic DNA
T4524 223-226 CHEBI_SO_EXT:DNA denotes DNA
R2587 T4521 T4520 _lexicallyChainedTo DNA,amplification of

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4364 29-39 SO:0000673 denotes transcript
T4365 50-57 SO:0001026 denotes genomic
T4366 70-74 SO:0000704 denotes gene
T4367 99-103 SO:0000704 denotes gene
T4368 113-119 SO:0000112 denotes primer
T4369 135-154 GO:0001171 denotes reverse-transcribed
T4370 192-208 _FRAGMENT denotes amplification of
T4371 223-226 GO:0006277 denotes DNA
T4372 209-214 NCBITaxon:10088 denotes mouse
T4373 215-222 SO:0001026 denotes genomic
R2586 T4371 T4370 _lexicallyChainedTo DNA,amplification of