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PMC:3148254 / 9621-9734 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T15371 44-48 Protein denotes CD40
T15372 49-57 Positive_regulation denotes mediated
T15373 58-62 Protein denotes CD80
T15374 63-75 Positive_regulation denotes upregulation
T15375 79-88 Negative_regulation denotes defective
T15376 92-96 Protein denotes HOIP
T15377 97-106 Negative_regulation denotes deficient
R12170 T15371 T15372 causeOf CD40,mediated
R12171 T15372 T15375 themeOf mediated,defective
R12172 T15373 T15374 themeOf CD80,upregulation
R12173 T15374 T15372 themeOf upregulation,mediated
R12174 T15376 T15377 themeOf HOIP,deficient

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T15644 44-48 Protein denotes CD40
T15645 58-62 Protein denotes CD80
T15646 63-75 Positive_regulation denotes upregulation
T15647 79-88 Negative_regulation denotes defective
T15648 49-57 Positive_regulation denotes mediated
R12390 T15644 T15648 causeOf CD40,mediated
R12391 T15645 T15646 themeOf CD80,upregulation
R12392 T15646 T15647 themeOf upregulation,defective
R12393 T15646 T15648 themeOf upregulation,mediated

events-check-again

Id Subject Object Predicate Lexical cue
T15658 44-48 Protein denotes CD40
T15659 49-57 Positive_regulation denotes mediated
T15660 58-62 Protein denotes CD80
T15661 63-75 Positive_regulation denotes upregulation
T15662 79-88 Negative_regulation denotes defective
T15663 92-96 Protein denotes HOIP
T15664 97-106 Negative_regulation denotes deficient
R12397 T15658 T15659 causeOf CD40,mediated
R12398 T15659 T15662 themeOf mediated,defective
R12399 T15660 T15661 themeOf CD80,upregulation
R12400 T15661 T15659 themeOf upregulation,mediated
R12401 T15663 T15664 themeOf HOIP,deficient

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15490 44-57 JJ denotes CD40-mediated
T15491 58-62 NN denotes CD80
T15492 63-75 NN denotes upregulation
T15493 76-78 VB denotes is
T15494 79-88 JJ denotes defective
T15495 89-91 IN denotes in
T15496 92-106 JJ denotes HOIP-deficient
T15497 107-112 NN denotes cells
R12278 T15492 T15490 arg1Of upregulation,CD40-mediated
R12279 T15492 T15491 arg1Of upregulation,CD80
R12280 T15492 T15493 arg1Of upregulation,is
R12281 T15492 T15494 arg1Of upregulation,defective
R12282 T15493 T15495 arg1Of is,in
R12283 T15494 T15493 arg2Of defective,is
R12284 T15497 T15495 arg2Of cells,in
R12285 T15497 T15496 arg1Of cells,HOIP-deficient

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15392 44-57 JJ denotes CD40-mediated
T15393 58-62 NN denotes CD80
T15394 63-75 NN denotes upregulation
T15395 76-78 VBZ denotes is
T15396 79-88 JJ denotes defective
T15397 89-91 IN denotes in
T15398 92-106 JJ denotes HOIP-deficient
T15399 107-112 NNS denotes cells
T15400 112-113 . denotes .
R12180 T15392 T15394 amod CD40-mediated,upregulation
R12181 T15393 T15394 compound CD80,upregulation
R12182 T15394 T15395 nsubj upregulation,is
R12183 T15395 T15395 ROOT is,is
R12184 T15396 T15395 acomp defective,is
R12185 T15397 T15396 prep in,defective
R12186 T15398 T15399 amod HOIP-deficient,cells
R12187 T15399 T15397 pobj cells,in
R12188 T15400 T15395 punct .,is

GO-CC

Id Subject Object Predicate Lexical cue
T15601 107-112 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T15388 44-113 Sentence denotes CD40-mediated CD80 upregulation is defective in HOIP-deficient cells.
T67 0-113 Sentence denotes 10.1371/journal.pone.0023061.g002 Figure 2 CD40-mediated CD80 upregulation is defective in HOIP-deficient cells.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15581 44-48 P25942 denotes CD40
T15582 58-62 P33681 denotes CD80
T15583 92-96 Q96EP0 denotes HOIP

test2

Id Subject Object Predicate Lexical cue Speculation
T15355 44-48 Protein denotes CD40
T15356 49-57 Positive_regulation denotes mediated
T15357 58-62 Protein denotes CD80
T15358 63-75 Positive_regulation denotes upregulation
T15359 79-88 Negative_regulation denotes defective true
T15360 92-96 Protein denotes HOIP
T15361 97-106 Negative_regulation denotes deficient
R12159 T15355 T15356 causeOf CD40,mediated
R12160 T15356 T15359 themeOf mediated,defective
R12161 T15357 T15358 themeOf CD80,upregulation
R12162 T15358 T15356 themeOf upregulation,mediated
R12163 T15358 T15359 themeOf upregulation,defective
R12164 T15360 T15361 themeOf HOIP,deficient
R12165 T15361 T15359 causeOf deficient,defective