PMC:3148254 / 582-811
Annnotations
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T92","span":{"begin":156,"end":160},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"or-associated complex that mediates activation of NF-κB, stress-activated protein kinases, and other signaling molecules. However, the mechanisms that link CD40 to these signaling events have been only partially characterized. Kn"}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T899","span":{"begin":50,"end":55},"obj":"Protein"},{"id":"T900","span":{"begin":57,"end":89},"obj":"Protein"},{"id":"T902","span":{"begin":36,"end":46},"obj":"Positive_regulation"},{"id":"T903","span":{"begin":36,"end":46},"obj":"Positive_regulation"},{"id":"T904","span":{"begin":156,"end":160},"obj":"Protein"}],"relations":[{"id":"R655","pred":"themeOf","subj":"T899","obj":"T902"},{"id":"R656","pred":"themeOf","subj":"T900","obj":"T903"}],"text":"or-associated complex that mediates activation of NF-κB, stress-activated protein kinases, and other signaling molecules. However, the mechanisms that link CD40 to these signaling events have been only partially characterized. Kn"}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T952","span":{"begin":156,"end":160},"obj":"Protein"}],"text":"or-associated complex that mediates activation of NF-κB, stress-activated protein kinases, and other signaling molecules. However, the mechanisms that link CD40 to these signaling events have been only partially characterized. Kn"}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T509","span":{"begin":14,"end":21},"obj":"NN"},{"id":"T510","span":{"begin":22,"end":26},"obj":"WDT"},{"id":"T511","span":{"begin":27,"end":35},"obj":"VB"},{"id":"T512","span":{"begin":36,"end":46},"obj":"NN"},{"id":"T513","span":{"begin":47,"end":49},"obj":"IN"},{"id":"T514","span":{"begin":50,"end":55},"obj":"NN"},{"id":"T515","span":{"begin":55,"end":56},"obj":"-COMMA-"},{"id":"T516","span":{"begin":57,"end":73},"obj":"JJ"},{"id":"T517","span":{"begin":74,"end":81},"obj":"NN"},{"id":"T518","span":{"begin":82,"end":89},"obj":"NN"},{"id":"T519","span":{"begin":89,"end":90},"obj":"-COMMA-"},{"id":"T520","span":{"begin":91,"end":94},"obj":"CC"},{"id":"T521","span":{"begin":95,"end":100},"obj":"JJ"},{"id":"T522","span":{"begin":101,"end":110},"obj":"VB"},{"id":"T523","span":{"begin":111,"end":120},"obj":"NN"},{"id":"T524","span":{"begin":122,"end":129},"obj":"RB"},{"id":"T525","span":{"begin":129,"end":130},"obj":"-COMMA-"},{"id":"T526","span":{"begin":131,"end":134},"obj":"DT"},{"id":"T527","span":{"begin":135,"end":145},"obj":"NN"},{"id":"T528","span":{"begin":146,"end":150},"obj":"WDT"},{"id":"T529","span":{"begin":151,"end":155},"obj":"VB"},{"id":"T530","span":{"begin":156,"end":160},"obj":"NN"},{"id":"T531","span":{"begin":161,"end":163},"obj":"TO"},{"id":"T532","span":{"begin":164,"end":169},"obj":"DT"},{"id":"T533","span":{"begin":170,"end":179},"obj":"NN"},{"id":"T534","span":{"begin":180,"end":186},"obj":"NN"},{"id":"T535","span":{"begin":187,"end":191},"obj":"VB"},{"id":"T536","span":{"begin":192,"end":196},"obj":"VB"},{"id":"T537","span":{"begin":197,"end":201},"obj":"RB"},{"id":"T538","span":{"begin":202,"end":211},"obj":"RB"},{"id":"T539","span":{"begin":212,"end":225},"obj":"VB"}],"relations":[{"id":"R431","pred":"arg2Of","subj":"T512","obj":"T511"},{"id":"R432","pred":"arg1Of","subj":"T512","obj":"T513"},{"id":"R433","pred":"arg1Of","subj":"T514","obj":"T515"},{"id":"R434","pred":"arg1Of","subj":"T515","obj":"T520"},{"id":"R435","pred":"arg2Of","subj":"T518","obj":"T515"},{"id":"R436","pred":"arg1Of","subj":"T518","obj":"T516"},{"id":"R437","pred":"arg1Of","subj":"T518","obj":"T517"},{"id":"R438","pred":"arg2Of","subj":"T520","obj":"T513"},{"id":"R439","pred":"arg1Of","subj":"T520","obj":"T519"},{"id":"R440","pred":"arg2Of","subj":"T523","obj":"T520"},{"id":"R441","pred":"arg1Of","subj":"T523","obj":"T521"},{"id":"R442","pred":"arg1Of","subj":"T523","obj":"T522"},{"id":"R443","pred":"arg1Of","subj":"T527","obj":"T526"},{"id":"R444","pred":"arg1Of","subj":"T527","obj":"T528"},{"id":"R445","pred":"arg1Of","subj":"T527","obj":"T529"},{"id":"R446","pred":"arg1Of","subj":"T527","obj":"T535"},{"id":"R447","pred":"arg1Of","subj":"T527","obj":"T536"},{"id":"R448","pred":"arg2Of","subj":"T527","obj":"T539"},{"id":"R449","pred":"arg1Of","subj":"T529","obj":"T531"},{"id":"R450","pred":"arg2Of","subj":"T530","obj":"T529"},{"id":"R451","pred":"arg2Of","subj":"T534","obj":"T531"},{"id":"R452","pred":"arg1Of","subj":"T534","obj":"T532"},{"id":"R453","pred":"arg1Of","subj":"T534","obj":"T533"},{"id":"R454","pred":"arg1Of","subj":"T538","obj":"T537"},{"id":"R455","pred":"arg1Of","subj":"T539","obj":"T524"},{"id":"R456","pred":"arg1Of","subj":"T539","obj":"T525"},{"id":"R457","pred":"arg2Of","subj":"T539","obj":"T535"},{"id":"R458","pred":"arg2Of","subj":"T539","obj":"T536"},{"id":"R459","pred":"arg1Of","subj":"T539","obj":"T538"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"or-associated complex that mediates activation of NF-κB, stress-activated protein kinases, and other signaling molecules. However, the mechanisms that link CD40 to these signaling events have been only partially characterized. Kn"}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T222","span":{"begin":14,"end":21},"obj":"NN"},{"id":"T223","span":{"begin":22,"end":26},"obj":"WDT"},{"id":"T224","span":{"begin":27,"end":35},"obj":"VBZ"},{"id":"T225","span":{"begin":36,"end":46},"obj":"NN"},{"id":"T226","span":{"begin":47,"end":49},"obj":"IN"},{"id":"T227","span":{"begin":50,"end":55},"obj":"NNP"},{"id":"T228","span":{"begin":55,"end":56},"obj":","},{"id":"T229","span":{"begin":57,"end":73},"obj":"JJ"},{"id":"T230","span":{"begin":74,"end":81},"obj":"NN"},{"id":"T231","span":{"begin":82,"end":89},"obj":"NNS"},{"id":"T232","span":{"begin":89,"end":90},"obj":","},{"id":"T233","span":{"begin":91,"end":94},"obj":"CC"},{"id":"T234","span":{"begin":95,"end":100},"obj":"JJ"},{"id":"T235","span":{"begin":101,"end":110},"obj":"VBG"},{"id":"T236","span":{"begin":111,"end":120},"obj":"NNS"},{"id":"T237","span":{"begin":120,"end":121},"obj":"."},{"id":"T238","span":{"begin":122,"end":129},"obj":"RB"},{"id":"T239","span":{"begin":129,"end":130},"obj":","},{"id":"T240","span":{"begin":131,"end":134},"obj":"DT"},{"id":"T241","span":{"begin":135,"end":145},"obj":"NNS"},{"id":"T242","span":{"begin":146,"end":150},"obj":"WDT"},{"id":"T243","span":{"begin":151,"end":155},"obj":"VBP"},{"id":"T244","span":{"begin":156,"end":160},"obj":"CD"},{"id":"T245","span":{"begin":161,"end":163},"obj":"TO"},{"id":"T246","span":{"begin":164,"end":169},"obj":"DT"},{"id":"T247","span":{"begin":170,"end":179},"obj":"VBG"},{"id":"T248","span":{"begin":180,"end":186},"obj":"NNS"},{"id":"T249","span":{"begin":187,"end":191},"obj":"VBP"},{"id":"T250","span":{"begin":192,"end":196},"obj":"VBN"},{"id":"T251","span":{"begin":197,"end":201},"obj":"RB"},{"id":"T252","span":{"begin":202,"end":211},"obj":"RB"},{"id":"T253","span":{"begin":212,"end":225},"obj":"VBN"},{"id":"T254","span":{"begin":225,"end":226},"obj":"."}],"relations":[{"id":"R145","pred":"nsubj","subj":"T223","obj":"T224"},{"id":"R146","pred":"relcl","subj":"T224","obj":"T222"},{"id":"R147","pred":"dobj","subj":"T225","obj":"T224"},{"id":"R148","pred":"prep","subj":"T226","obj":"T225"},{"id":"R149","pred":"pobj","subj":"T227","obj":"T226"},{"id":"R150","pred":"punct","subj":"T228","obj":"T227"},{"id":"R151","pred":"amod","subj":"T229","obj":"T231"},{"id":"R152","pred":"compound","subj":"T230","obj":"T231"},{"id":"R153","pred":"conj","subj":"T231","obj":"T225"},{"id":"R154","pred":"punct","subj":"T232","obj":"T231"},{"id":"R155","pred":"cc","subj":"T233","obj":"T231"},{"id":"R156","pred":"amod","subj":"T234","obj":"T236"},{"id":"R157","pred":"amod","subj":"T235","obj":"T236"},{"id":"R158","pred":"conj","subj":"T236","obj":"T231"},{"id":"R160","pred":"advmod","subj":"T238","obj":"T250"},{"id":"R161","pred":"punct","subj":"T239","obj":"T250"},{"id":"R162","pred":"det","subj":"T240","obj":"T241"},{"id":"R163","pred":"nsubj","subj":"T241","obj":"T250"},{"id":"R164","pred":"nsubj","subj":"T242","obj":"T243"},{"id":"R165","pred":"relcl","subj":"T243","obj":"T241"},{"id":"R166","pred":"dobj","subj":"T244","obj":"T243"},{"id":"R167","pred":"prep","subj":"T245","obj":"T243"},{"id":"R168","pred":"det","subj":"T246","obj":"T248"},{"id":"R169","pred":"amod","subj":"T247","obj":"T248"},{"id":"R170","pred":"pobj","subj":"T248","obj":"T245"},{"id":"R171","pred":"aux","subj":"T249","obj":"T250"},{"id":"R172","pred":"ROOT","subj":"T250","obj":"T250"},{"id":"R173","pred":"advmod","subj":"T251","obj":"T253"},{"id":"R174","pred":"advmod","subj":"T252","obj":"T253"},{"id":"R175","pred":"acomp","subj":"T253","obj":"T250"},{"id":"R176","pred":"punct","subj":"T254","obj":"T253"}],"text":"or-associated complex that mediates activation of NF-κB, stress-activated protein kinases, and other signaling molecules. However, the mechanisms that link CD40 to these signaling events have been only partially characterized. Kn"}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T758","span":{"begin":101,"end":110},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T759","span":{"begin":170,"end":179},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T779","span":{"begin":36,"end":55},"obj":"http://purl.obolibrary.org/obo/GO_0051092"},{"id":"T782","span":{"begin":64,"end":89},"obj":"http://purl.obolibrary.org/obo/GO_0034199"},{"id":"T783","span":{"begin":64,"end":89},"obj":"http://purl.obolibrary.org/obo/GO_0032147"},{"id":"T784","span":{"begin":64,"end":89},"obj":"http://purl.obolibrary.org/obo/GO_0030295"},{"id":"T785","span":{"begin":64,"end":89},"obj":"http://purl.obolibrary.org/obo/GO_0032111"}],"text":"or-associated complex that mediates activation of NF-κB, stress-activated protein kinases, and other signaling molecules. However, the mechanisms that link CD40 to these signaling events have been only partially characterized. Kn"}
GO-MF
{"project":"GO-MF","denotations":[{"id":"T797","span":{"begin":64,"end":89},"obj":"http://purl.obolibrary.org/obo/GO_0030295"}],"text":"or-associated complex that mediates activation of NF-κB, stress-activated protein kinases, and other signaling molecules. However, the mechanisms that link CD40 to these signaling events have been only partially characterized. Kn"}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T809","span":{"begin":14,"end":35},"obj":"http://purl.obolibrary.org/obo/GO_0016592"}],"text":"or-associated complex that mediates activation of NF-κB, stress-activated protein kinases, and other signaling molecules. However, the mechanisms that link CD40 to these signaling events have been only partially characterized. Kn"}
sentences
{"project":"sentences","denotations":[{"id":"T126","span":{"begin":122,"end":226},"obj":"Sentence"},{"id":"T7","span":{"begin":122,"end":226},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"or-associated complex that mediates activation of NF-κB, stress-activated protein kinases, and other signaling molecules. However, the mechanisms that link CD40 to these signaling events have been only partially characterized. Kn"}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T710","span":{"begin":57,"end":89},"obj":"P53778"},{"id":"T711","span":{"begin":57,"end":89},"obj":"O15264"},{"id":"T712","span":{"begin":156,"end":160},"obj":"P25942"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"or-associated complex that mediates activation of NF-κB, stress-activated protein kinases, and other signaling molecules. However, the mechanisms that link CD40 to these signaling events have been only partially characterized. Kn"}
test2
{"project":"test2","denotations":[{"id":"T52","span":{"begin":156,"end":160},"obj":"Protein"}],"text":"or-associated complex that mediates activation of NF-κB, stress-activated protein kinases, and other signaling molecules. However, the mechanisms that link CD40 to these signaling events have been only partially characterized. Kn"}