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PMC:3148254 / 582-811 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T92 156-160 Protein denotes CD40

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T899 50-55 Protein denotes NF-κB
T900 57-89 Protein denotes stress-activated protein kinases
T902 36-46 Positive_regulation denotes activation
T903 36-46 Positive_regulation denotes activation
T904 156-160 Protein denotes CD40
R655 T899 T902 themeOf NF-κB,activation
R656 T900 T903 themeOf stress-activated protein kinases,activation

events-check-again

Id Subject Object Predicate Lexical cue
T952 156-160 Protein denotes CD40

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T509 14-21 NN denotes complex
T510 22-26 WDT denotes that
T511 27-35 VB denotes mediates
T512 36-46 NN denotes activation
T513 47-49 IN denotes of
T514 50-55 NN denotes NF-κB
T515 55-56 -COMMA- denotes ,
T516 57-73 JJ denotes stress-activated
T517 74-81 NN denotes protein
T518 82-89 NN denotes kinases
T519 89-90 -COMMA- denotes ,
T520 91-94 CC denotes and
T521 95-100 JJ denotes other
T522 101-110 VB denotes signaling
T523 111-120 NN denotes molecules
T524 122-129 RB denotes However
T525 129-130 -COMMA- denotes ,
T526 131-134 DT denotes the
T527 135-145 NN denotes mechanisms
T528 146-150 WDT denotes that
T529 151-155 VB denotes link
T530 156-160 NN denotes CD40
T531 161-163 TO denotes to
T532 164-169 DT denotes these
T533 170-179 NN denotes signaling
T534 180-186 NN denotes events
T535 187-191 VB denotes have
T536 192-196 VB denotes been
T537 197-201 RB denotes only
T538 202-211 RB denotes partially
T539 212-225 VB denotes characterized
R431 T512 T511 arg2Of activation,mediates
R432 T512 T513 arg1Of activation,of
R433 T514 T515 arg1Of NF-κB,","
R434 T515 T520 arg1Of ",",and
R435 T518 T515 arg2Of kinases,","
R436 T518 T516 arg1Of kinases,stress-activated
R437 T518 T517 arg1Of kinases,protein
R438 T520 T513 arg2Of and,of
R439 T520 T519 arg1Of and,","
R440 T523 T520 arg2Of molecules,and
R441 T523 T521 arg1Of molecules,other
R442 T523 T522 arg1Of molecules,signaling
R443 T527 T526 arg1Of mechanisms,the
R444 T527 T528 arg1Of mechanisms,that
R445 T527 T529 arg1Of mechanisms,link
R446 T527 T535 arg1Of mechanisms,have
R447 T527 T536 arg1Of mechanisms,been
R448 T527 T539 arg2Of mechanisms,characterized
R449 T529 T531 arg1Of link,to
R450 T530 T529 arg2Of CD40,link
R451 T534 T531 arg2Of events,to
R452 T534 T532 arg1Of events,these
R453 T534 T533 arg1Of events,signaling
R454 T538 T537 arg1Of partially,only
R455 T539 T524 arg1Of characterized,However
R456 T539 T525 arg1Of characterized,","
R457 T539 T535 arg2Of characterized,have
R458 T539 T536 arg2Of characterized,been
R459 T539 T538 arg1Of characterized,partially

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T222 14-21 NN denotes complex
T223 22-26 WDT denotes that
T224 27-35 VBZ denotes mediates
T225 36-46 NN denotes activation
T226 47-49 IN denotes of
T227 50-55 NNP denotes NF-κB
T228 55-56 , denotes ,
T229 57-73 JJ denotes stress-activated
T230 74-81 NN denotes protein
T231 82-89 NNS denotes kinases
T232 89-90 , denotes ,
T233 91-94 CC denotes and
T234 95-100 JJ denotes other
T235 101-110 VBG denotes signaling
T236 111-120 NNS denotes molecules
T237 120-121 . denotes .
T238 122-129 RB denotes However
T239 129-130 , denotes ,
T240 131-134 DT denotes the
T241 135-145 NNS denotes mechanisms
T242 146-150 WDT denotes that
T243 151-155 VBP denotes link
T244 156-160 CD denotes CD40
T245 161-163 TO denotes to
T246 164-169 DT denotes these
T247 170-179 VBG denotes signaling
T248 180-186 NNS denotes events
T249 187-191 VBP denotes have
T250 192-196 VBN denotes been
T251 197-201 RB denotes only
T252 202-211 RB denotes partially
T253 212-225 VBN denotes characterized
T254 225-226 . denotes .
R145 T223 T224 nsubj that,mediates
R146 T224 T222 relcl mediates,complex
R147 T225 T224 dobj activation,mediates
R148 T226 T225 prep of,activation
R149 T227 T226 pobj NF-κB,of
R150 T228 T227 punct ",",NF-κB
R151 T229 T231 amod stress-activated,kinases
R152 T230 T231 compound protein,kinases
R153 T231 T225 conj kinases,activation
R154 T232 T231 punct ",",kinases
R155 T233 T231 cc and,kinases
R156 T234 T236 amod other,molecules
R157 T235 T236 amod signaling,molecules
R158 T236 T231 conj molecules,kinases
R160 T238 T250 advmod However,been
R161 T239 T250 punct ",",been
R162 T240 T241 det the,mechanisms
R163 T241 T250 nsubj mechanisms,been
R164 T242 T243 nsubj that,link
R165 T243 T241 relcl link,mechanisms
R166 T244 T243 dobj CD40,link
R167 T245 T243 prep to,link
R168 T246 T248 det these,events
R169 T247 T248 amod signaling,events
R170 T248 T245 pobj events,to
R171 T249 T250 aux have,been
R172 T250 T250 ROOT been,been
R173 T251 T253 advmod only,characterized
R174 T252 T253 advmod partially,characterized
R175 T253 T250 acomp characterized,been
R176 T254 T253 punct .,characterized

GO-BP

Id Subject Object Predicate Lexical cue
T758 101-110 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T759 170-179 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T779 36-55 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB
T782 64-89 http://purl.obolibrary.org/obo/GO_0034199 denotes activated protein kinases
T783 64-89 http://purl.obolibrary.org/obo/GO_0032147 denotes activated protein kinases
T784 64-89 http://purl.obolibrary.org/obo/GO_0030295 denotes activated protein kinases
T785 64-89 http://purl.obolibrary.org/obo/GO_0032111 denotes activated protein kinases

GO-MF

Id Subject Object Predicate Lexical cue
T797 64-89 http://purl.obolibrary.org/obo/GO_0030295 denotes activated protein kinases

GO-CC

Id Subject Object Predicate Lexical cue
T809 14-35 http://purl.obolibrary.org/obo/GO_0016592 denotes complex that mediates

sentences

Id Subject Object Predicate Lexical cue
T126 122-226 Sentence denotes However, the mechanisms that link CD40 to these signaling events have been only partially characterized.
T7 122-226 Sentence denotes However, the mechanisms that link CD40 to these signaling events have been only partially characterized.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T710 57-89 P53778 denotes stress-activated protein kinases
T711 57-89 O15264 denotes stress-activated protein kinases
T712 156-160 P25942 denotes CD40

test2

Id Subject Object Predicate Lexical cue
T52 156-160 Protein denotes CD40