PMC:3148254 / 5303-5476 JSONTXT

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    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T2822","span":{"begin":23,"end":34},"obj":"Binding"},{"id":"T2823","span":{"begin":38,"end":42},"obj":"Protein"},{"id":"T2824","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T2825","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T2826","span":{"begin":61,"end":70},"obj":"Regulation"},{"id":"T2827","span":{"begin":110,"end":114},"obj":"Protein"},{"id":"T2828","span":{"begin":142,"end":146},"obj":"Protein"}],"relations":[{"id":"R2107","pred":"themeOf","subj":"T2822","obj":"T2826"},{"id":"R2108","pred":"themeOf","subj":"T2823","obj":"T2822"},{"id":"R2109","pred":"themeOf","subj":"T2824","obj":"T2822"},{"id":"R2110","pred":"causeOf","subj":"T2825","obj":"T2826"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"We also found that the recruitment of HOIP to CD40 was TRAF2-dependent and that overexpression of a truncated HOIP mutant partially inhibited CD40-mediated NF-κB activation."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T3958","span":{"begin":38,"end":42},"obj":"Protein"},{"id":"T3959","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T3960","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T3961","span":{"begin":110,"end":121},"obj":"Protein"},{"id":"T3962","span":{"begin":142,"end":146},"obj":"Protein"},{"id":"T3963","span":{"begin":156,"end":161},"obj":"Protein"},{"id":"T3964","span":{"begin":23,"end":34},"obj":"Binding"},{"id":"T3965","span":{"begin":80,"end":94},"obj":"Gene_expression"},{"id":"T3966","span":{"begin":80,"end":94},"obj":"Positive_regulation"},{"id":"T3967","span":{"begin":162,"end":172},"obj":"Positive_regulation"}],"relations":[{"id":"R3088","pred":"themeOf","subj":"T3958","obj":"T3964"},{"id":"R3089","pred":"themeOf","subj":"T3959","obj":"T3964"},{"id":"R3090","pred":"themeOf","subj":"T3961","obj":"T3965"},{"id":"R3091","pred":"themeOf","subj":"T3963","obj":"T3967"},{"id":"R3092","pred":"themeOf","subj":"T3965","obj":"T3966"}],"text":"We also found that the recruitment of HOIP to CD40 was TRAF2-dependent and that overexpression of a truncated HOIP mutant partially inhibited CD40-mediated NF-κB activation."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T3993","span":{"begin":23,"end":34},"obj":"Binding"},{"id":"T3994","span":{"begin":38,"end":42},"obj":"Protein"},{"id":"T3995","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T3996","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T3997","span":{"begin":61,"end":70},"obj":"Regulation"},{"id":"T3998","span":{"begin":110,"end":114},"obj":"Protein"},{"id":"T3999","span":{"begin":142,"end":146},"obj":"Protein"}],"relations":[{"id":"R3110","pred":"themeOf","subj":"T3993","obj":"T3997"},{"id":"R3111","pred":"themeOf","subj":"T3994","obj":"T3993"},{"id":"R3112","pred":"themeOf","subj":"T3995","obj":"T3993"},{"id":"R3113","pred":"causeOf","subj":"T3996","obj":"T3997"}],"text":"We also found that the recruitment of HOIP to CD40 was TRAF2-dependent and that overexpression of a truncated HOIP mutant partially inhibited CD40-mediated NF-κB activation."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T3409","span":{"begin":0,"end":2},"obj":"PRP"},{"id":"T3410","span":{"begin":3,"end":7},"obj":"RB"},{"id":"T3411","span":{"begin":8,"end":13},"obj":"VB"},{"id":"T3412","span":{"begin":14,"end":18},"obj":"IN"},{"id":"T3413","span":{"begin":19,"end":22},"obj":"DT"},{"id":"T3414","span":{"begin":23,"end":34},"obj":"NN"},{"id":"T3415","span":{"begin":35,"end":37},"obj":"IN"},{"id":"T3416","span":{"begin":38,"end":42},"obj":"NN"},{"id":"T3417","span":{"begin":43,"end":45},"obj":"TO"},{"id":"T3418","span":{"begin":46,"end":50},"obj":"NN"},{"id":"T3419","span":{"begin":51,"end":54},"obj":"VB"},{"id":"T3420","span":{"begin":55,"end":70},"obj":"JJ"},{"id":"T3421","span":{"begin":71,"end":74},"obj":"CC"},{"id":"T3422","span":{"begin":75,"end":79},"obj":"IN"},{"id":"T3423","span":{"begin":80,"end":94},"obj":"NN"},{"id":"T3424","span":{"begin":95,"end":97},"obj":"IN"},{"id":"T3425","span":{"begin":98,"end":99},"obj":"DT"},{"id":"T3426","span":{"begin":100,"end":109},"obj":"VB"},{"id":"T3427","span":{"begin":110,"end":114},"obj":"NN"},{"id":"T3428","span":{"begin":115,"end":121},"obj":"NN"},{"id":"T3429","span":{"begin":122,"end":131},"obj":"RB"},{"id":"T3430","span":{"begin":132,"end":141},"obj":"VB"},{"id":"T3431","span":{"begin":142,"end":155},"obj":"JJ"},{"id":"T3432","span":{"begin":156,"end":161},"obj":"NN"},{"id":"T3433","span":{"begin":162,"end":172},"obj":"NN"}],"relations":[{"id":"R2654","pred":"arg1Of","subj":"T3409","obj":"T3411"},{"id":"R2655","pred":"arg1Of","subj":"T3411","obj":"T3410"},{"id":"R2656","pred":"arg1Of","subj":"T3414","obj":"T3413"},{"id":"R2657","pred":"arg1Of","subj":"T3414","obj":"T3415"},{"id":"R2658","pred":"arg1Of","subj":"T3414","obj":"T3417"},{"id":"R2659","pred":"arg1Of","subj":"T3414","obj":"T3419"},{"id":"R2660","pred":"arg1Of","subj":"T3414","obj":"T3420"},{"id":"R2661","pred":"arg2Of","subj":"T3416","obj":"T3415"},{"id":"R2662","pred":"arg2Of","subj":"T3418","obj":"T3417"},{"id":"R2663","pred":"arg1Of","subj":"T3419","obj":"T3412"},{"id":"R2664","pred":"arg1Of","subj":"T3419","obj":"T3421"},{"id":"R2665","pred":"arg2Of","subj":"T3420","obj":"T3419"},{"id":"R2666","pred":"arg2Of","subj":"T3421","obj":"T3411"},{"id":"R2667","pred":"arg2Of","subj":"T3422","obj":"T3421"},{"id":"R2668","pred":"arg1Of","subj":"T3423","obj":"T3424"},{"id":"R2669","pred":"arg1Of","subj":"T3423","obj":"T3430"},{"id":"R2670","pred":"arg2Of","subj":"T3428","obj":"T3424"},{"id":"R2671","pred":"arg1Of","subj":"T3428","obj":"T3425"},{"id":"R2672","pred":"arg2Of","subj":"T3428","obj":"T3426"},{"id":"R2673","pred":"arg1Of","subj":"T3428","obj":"T3427"},{"id":"R2674","pred":"arg2Of","subj":"T3430","obj":"T3422"},{"id":"R2675","pred":"arg1Of","subj":"T3430","obj":"T3429"},{"id":"R2676","pred":"arg2Of","subj":"T3433","obj":"T3430"},{"id":"R2677","pred":"arg1Of","subj":"T3433","obj":"T3431"},{"id":"R2678","pred":"arg1Of","subj":"T3433","obj":"T3432"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"We also found that the recruitment of HOIP to CD40 was TRAF2-dependent and that overexpression of a truncated HOIP mutant partially inhibited CD40-mediated NF-κB activation."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T2950","span":{"begin":0,"end":2},"obj":"PRP"},{"id":"T2951","span":{"begin":3,"end":7},"obj":"RB"},{"id":"T2952","span":{"begin":8,"end":13},"obj":"VBD"},{"id":"T2953","span":{"begin":14,"end":18},"obj":"IN"},{"id":"T2954","span":{"begin":19,"end":22},"obj":"DT"},{"id":"T2955","span":{"begin":23,"end":34},"obj":"NN"},{"id":"T2956","span":{"begin":35,"end":37},"obj":"IN"},{"id":"T2957","span":{"begin":38,"end":42},"obj":"NNP"},{"id":"T2958","span":{"begin":43,"end":45},"obj":"TO"},{"id":"T2959","span":{"begin":46,"end":50},"obj":"NNP"},{"id":"T2960","span":{"begin":51,"end":54},"obj":"VBD"},{"id":"T2961","span":{"begin":55,"end":70},"obj":"JJ"},{"id":"T2962","span":{"begin":71,"end":74},"obj":"CC"},{"id":"T2963","span":{"begin":75,"end":79},"obj":"IN"},{"id":"T2964","span":{"begin":80,"end":94},"obj":"NN"},{"id":"T2965","span":{"begin":95,"end":97},"obj":"IN"},{"id":"T2966","span":{"begin":98,"end":99},"obj":"DT"},{"id":"T2967","span":{"begin":100,"end":109},"obj":"VBN"},{"id":"T2968","span":{"begin":110,"end":114},"obj":"NNP"},{"id":"T2969","span":{"begin":115,"end":121},"obj":"JJ"},{"id":"T2970","span":{"begin":122,"end":131},"obj":"RB"},{"id":"T2971","span":{"begin":132,"end":141},"obj":"VBN"},{"id":"T2972","span":{"begin":142,"end":155},"obj":"JJ"},{"id":"T2973","span":{"begin":156,"end":161},"obj":"NN"},{"id":"T2974","span":{"begin":162,"end":172},"obj":"NN"},{"id":"T2975","span":{"begin":172,"end":173},"obj":"."}],"relations":[{"id":"R2195","pred":"nsubj","subj":"T2950","obj":"T2952"},{"id":"R2196","pred":"advmod","subj":"T2951","obj":"T2952"},{"id":"R2197","pred":"ROOT","subj":"T2952","obj":"T2952"},{"id":"R2198","pred":"mark","subj":"T2953","obj":"T2960"},{"id":"R2199","pred":"det","subj":"T2954","obj":"T2955"},{"id":"R2200","pred":"nsubj","subj":"T2955","obj":"T2960"},{"id":"R2201","pred":"prep","subj":"T2956","obj":"T2955"},{"id":"R2202","pred":"pobj","subj":"T2957","obj":"T2956"},{"id":"R2203","pred":"prep","subj":"T2958","obj":"T2955"},{"id":"R2204","pred":"pobj","subj":"T2959","obj":"T2958"},{"id":"R2205","pred":"ccomp","subj":"T2960","obj":"T2952"},{"id":"R2206","pred":"acomp","subj":"T2961","obj":"T2960"},{"id":"R2207","pred":"cc","subj":"T2962","obj":"T2960"},{"id":"R2208","pred":"det","subj":"T2963","obj":"T2964"},{"id":"R2209","pred":"conj","subj":"T2964","obj":"T2960"},{"id":"R2210","pred":"prep","subj":"T2965","obj":"T2964"},{"id":"R2211","pred":"det","subj":"T2966","obj":"T2969"},{"id":"R2212","pred":"amod","subj":"T2967","obj":"T2969"},{"id":"R2213","pred":"compound","subj":"T2968","obj":"T2969"},{"id":"R2214","pred":"amod","subj":"T2969","obj":"T2974"},{"id":"R2215","pred":"advmod","subj":"T2970","obj":"T2971"},{"id":"R2216","pred":"amod","subj":"T2971","obj":"T2974"},{"id":"R2217","pred":"amod","subj":"T2972","obj":"T2974"},{"id":"R2218","pred":"compound","subj":"T2973","obj":"T2974"},{"id":"R2219","pred":"pobj","subj":"T2974","obj":"T2965"},{"id":"R2220","pred":"punct","subj":"T2975","obj":"T2952"}],"text":"We also found that the recruitment of HOIP to CD40 was TRAF2-dependent and that overexpression of a truncated HOIP mutant partially inhibited CD40-mediated NF-κB activation."}

    sentences

    {"project":"sentences","denotations":[{"id":"T2866","span":{"begin":0,"end":173},"obj":"Sentence"},{"id":"T38","span":{"begin":0,"end":173},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"We also found that the recruitment of HOIP to CD40 was TRAF2-dependent and that overexpression of a truncated HOIP mutant partially inhibited CD40-mediated NF-κB activation."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T3789","span":{"begin":38,"end":42},"obj":"Q96EP0"},{"id":"T3790","span":{"begin":46,"end":50},"obj":"P25942"},{"id":"T3791","span":{"begin":55,"end":60},"obj":"Q12933"},{"id":"T3792","span":{"begin":110,"end":114},"obj":"Q96EP0"},{"id":"T3793","span":{"begin":142,"end":146},"obj":"P25942"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"We also found that the recruitment of HOIP to CD40 was TRAF2-dependent and that overexpression of a truncated HOIP mutant partially inhibited CD40-mediated NF-κB activation."}

    test2

    {"project":"test2","denotations":[{"id":"T2772","span":{"begin":23,"end":34},"obj":"Binding"},{"id":"T2773","span":{"begin":38,"end":42},"obj":"Protein"},{"id":"T2774","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T2775","span":{"begin":55,"end":60},"obj":"Protein"},{"id":"T2776","span":{"begin":61,"end":70},"obj":"Regulation"},{"id":"T2777","span":{"begin":110,"end":114},"obj":"Protein"},{"id":"T2778","span":{"begin":142,"end":146},"obj":"Protein"}],"relations":[{"id":"R2084","pred":"themeOf","subj":"T2772","obj":"T2776"},{"id":"R2085","pred":"themeOf","subj":"T2773","obj":"T2772"},{"id":"R2086","pred":"themeOf","subj":"T2774","obj":"T2772"},{"id":"R2087","pred":"causeOf","subj":"T2775","obj":"T2776"}],"attributes":[{"id":"M15","pred":"Negation","subj":"T2772","obj":"true"},{"id":"M16","pred":"Speculation","subj":"T2772","obj":"true"}],"text":"We also found that the recruitment of HOIP to CD40 was TRAF2-dependent and that overexpression of a truncated HOIP mutant partially inhibited CD40-mediated NF-κB activation."}