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PMC:3148254 / 5303-5476 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T2822 23-34 Binding denotes recruitment
T2823 38-42 Protein denotes HOIP
T2824 46-50 Protein denotes CD40
T2825 55-60 Protein denotes TRAF2
T2826 61-70 Regulation denotes dependent
T2827 110-114 Protein denotes HOIP
T2828 142-146 Protein denotes CD40
R2107 T2822 T2826 themeOf recruitment,dependent
R2108 T2823 T2822 themeOf HOIP,recruitment
R2109 T2824 T2822 themeOf CD40,recruitment
R2110 T2825 T2826 causeOf TRAF2,dependent

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T3958 38-42 Protein denotes HOIP
T3959 46-50 Protein denotes CD40
T3960 55-60 Protein denotes TRAF2
T3961 110-121 Protein denotes HOIP mutant
T3962 142-146 Protein denotes CD40
T3963 156-161 Protein denotes NF-κB
T3964 23-34 Binding denotes recruitment
T3965 80-94 Gene_expression denotes overexpression
T3966 80-94 Positive_regulation denotes overexpression
T3967 162-172 Positive_regulation denotes activation
R3088 T3958 T3964 themeOf HOIP,recruitment
R3089 T3959 T3964 themeOf CD40,recruitment
R3090 T3961 T3965 themeOf HOIP mutant,overexpression
R3091 T3963 T3967 themeOf NF-κB,activation
R3092 T3965 T3966 themeOf overexpression,overexpression

events-check-again

Id Subject Object Predicate Lexical cue
T3993 23-34 Binding denotes recruitment
T3994 38-42 Protein denotes HOIP
T3995 46-50 Protein denotes CD40
T3996 55-60 Protein denotes TRAF2
T3997 61-70 Regulation denotes dependent
T3998 110-114 Protein denotes HOIP
T3999 142-146 Protein denotes CD40
R3110 T3993 T3997 themeOf recruitment,dependent
R3111 T3994 T3993 themeOf HOIP,recruitment
R3112 T3995 T3993 themeOf CD40,recruitment
R3113 T3996 T3997 causeOf TRAF2,dependent

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3409 0-2 PRP denotes We
T3410 3-7 RB denotes also
T3411 8-13 VB denotes found
T3412 14-18 IN denotes that
T3413 19-22 DT denotes the
T3414 23-34 NN denotes recruitment
T3415 35-37 IN denotes of
T3416 38-42 NN denotes HOIP
T3417 43-45 TO denotes to
T3418 46-50 NN denotes CD40
T3419 51-54 VB denotes was
T3420 55-70 JJ denotes TRAF2-dependent
T3421 71-74 CC denotes and
T3422 75-79 IN denotes that
T3423 80-94 NN denotes overexpression
T3424 95-97 IN denotes of
T3425 98-99 DT denotes a
T3426 100-109 VB denotes truncated
T3427 110-114 NN denotes HOIP
T3428 115-121 NN denotes mutant
T3429 122-131 RB denotes partially
T3430 132-141 VB denotes inhibited
T3431 142-155 JJ denotes CD40-mediated
T3432 156-161 NN denotes NF-κB
T3433 162-172 NN denotes activation
R2654 T3409 T3411 arg1Of We,found
R2655 T3411 T3410 arg1Of found,also
R2656 T3414 T3413 arg1Of recruitment,the
R2657 T3414 T3415 arg1Of recruitment,of
R2658 T3414 T3417 arg1Of recruitment,to
R2659 T3414 T3419 arg1Of recruitment,was
R2660 T3414 T3420 arg1Of recruitment,TRAF2-dependent
R2661 T3416 T3415 arg2Of HOIP,of
R2662 T3418 T3417 arg2Of CD40,to
R2663 T3419 T3412 arg1Of was,that
R2664 T3419 T3421 arg1Of was,and
R2665 T3420 T3419 arg2Of TRAF2-dependent,was
R2666 T3421 T3411 arg2Of and,found
R2667 T3422 T3421 arg2Of that,and
R2668 T3423 T3424 arg1Of overexpression,of
R2669 T3423 T3430 arg1Of overexpression,inhibited
R2670 T3428 T3424 arg2Of mutant,of
R2671 T3428 T3425 arg1Of mutant,a
R2672 T3428 T3426 arg2Of mutant,truncated
R2673 T3428 T3427 arg1Of mutant,HOIP
R2674 T3430 T3422 arg2Of inhibited,that
R2675 T3430 T3429 arg1Of inhibited,partially
R2676 T3433 T3430 arg2Of activation,inhibited
R2677 T3433 T3431 arg1Of activation,CD40-mediated
R2678 T3433 T3432 arg1Of activation,NF-κB

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2950 0-2 PRP denotes We
T2951 3-7 RB denotes also
T2952 8-13 VBD denotes found
T2953 14-18 IN denotes that
T2954 19-22 DT denotes the
T2955 23-34 NN denotes recruitment
T2956 35-37 IN denotes of
T2957 38-42 NNP denotes HOIP
T2958 43-45 TO denotes to
T2959 46-50 NNP denotes CD40
T2960 51-54 VBD denotes was
T2961 55-70 JJ denotes TRAF2-dependent
T2962 71-74 CC denotes and
T2963 75-79 IN denotes that
T2964 80-94 NN denotes overexpression
T2965 95-97 IN denotes of
T2966 98-99 DT denotes a
T2967 100-109 VBN denotes truncated
T2968 110-114 NNP denotes HOIP
T2969 115-121 JJ denotes mutant
T2970 122-131 RB denotes partially
T2971 132-141 VBN denotes inhibited
T2972 142-155 JJ denotes CD40-mediated
T2973 156-161 NN denotes NF-κB
T2974 162-172 NN denotes activation
T2975 172-173 . denotes .
R2195 T2950 T2952 nsubj We,found
R2196 T2951 T2952 advmod also,found
R2197 T2952 T2952 ROOT found,found
R2198 T2953 T2960 mark that,was
R2199 T2954 T2955 det the,recruitment
R2200 T2955 T2960 nsubj recruitment,was
R2201 T2956 T2955 prep of,recruitment
R2202 T2957 T2956 pobj HOIP,of
R2203 T2958 T2955 prep to,recruitment
R2204 T2959 T2958 pobj CD40,to
R2205 T2960 T2952 ccomp was,found
R2206 T2961 T2960 acomp TRAF2-dependent,was
R2207 T2962 T2960 cc and,was
R2208 T2963 T2964 det that,overexpression
R2209 T2964 T2960 conj overexpression,was
R2210 T2965 T2964 prep of,overexpression
R2211 T2966 T2969 det a,mutant
R2212 T2967 T2969 amod truncated,mutant
R2213 T2968 T2969 compound HOIP,mutant
R2214 T2969 T2974 amod mutant,activation
R2215 T2970 T2971 advmod partially,inhibited
R2216 T2971 T2974 amod inhibited,activation
R2217 T2972 T2974 amod CD40-mediated,activation
R2218 T2973 T2974 compound NF-κB,activation
R2219 T2974 T2965 pobj activation,of
R2220 T2975 T2952 punct .,found

sentences

Id Subject Object Predicate Lexical cue
T2866 0-173 Sentence denotes We also found that the recruitment of HOIP to CD40 was TRAF2-dependent and that overexpression of a truncated HOIP mutant partially inhibited CD40-mediated NF-κB activation.
T38 0-173 Sentence denotes We also found that the recruitment of HOIP to CD40 was TRAF2-dependent and that overexpression of a truncated HOIP mutant partially inhibited CD40-mediated NF-κB activation.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3789 38-42 Q96EP0 denotes HOIP
T3790 46-50 P25942 denotes CD40
T3791 55-60 Q12933 denotes TRAF2
T3792 110-114 Q96EP0 denotes HOIP
T3793 142-146 P25942 denotes CD40

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T2772 23-34 Binding denotes recruitment true true
T2773 38-42 Protein denotes HOIP
T2774 46-50 Protein denotes CD40
T2775 55-60 Protein denotes TRAF2
T2776 61-70 Regulation denotes dependent
T2777 110-114 Protein denotes HOIP
T2778 142-146 Protein denotes CD40
R2084 T2772 T2776 themeOf recruitment,dependent
R2085 T2773 T2772 themeOf HOIP,recruitment
R2086 T2774 T2772 themeOf CD40,recruitment
R2087 T2775 T2776 causeOf TRAF2,dependent