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PMC:3148254 / 4606-4744 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T1175 43-54 Binding denotes association true
T1176 92-96 Protein denotes CD40
T1177 117-121 Protein denotes HOIP
T1178 122-131 Negative_regulation denotes deficient
T6576 43-54 Binding denotes association
R814 T1176 T1175 themeOf CD40,association
R815 T1177 T1178 themeOf HOIP,deficient

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2634 25-30 Protein denotes NF-κB
T2635 62-72 Protein denotes IκB kinase
T2636 74-77 Protein denotes IKK
T2637 92-96 Protein denotes CD40
T2638 31-41 Positive_regulation denotes activation
T2639 43-54 Binding denotes association
T2640 43-54 Binding denotes association
T2641 43-54 Binding denotes association
T8614 43-54 Binding denotes association
R1998 T2634 T2638 themeOf NF-κB,activation
R1999 T2635 T2640 themeOf IκB kinase,association
R2000 T2636 T2641 themeOf IKK,association
R2001 T2637 T2639 themeOf CD40,association
R2002 T2637 T2640 themeOf CD40,association
R2003 T2637 T2641 themeOf CD40,association

events-check-again

Id Subject Object Predicate Lexical cue Negation
T2704 43-54 Binding denotes association true
T2705 92-96 Protein denotes CD40
T2706 117-121 Protein denotes HOIP
T2707 122-131 Negative_regulation denotes deficient
T8588 43-54 Binding denotes association
R2051 T2705 T2704 themeOf CD40,association
R2052 T2706 T2707 themeOf HOIP,deficient

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2188 0-10 JJ denotes Consistent
T2189 11-15 IN denotes with
T2190 16-24 JJ denotes impaired
T2191 25-30 NN denotes NF-κB
T2192 31-41 NN denotes activation
T2193 41-42 -COMMA- denotes ,
T2194 43-54 NN denotes association
T2195 55-57 IN denotes of
T2196 58-61 DT denotes the
T2197 62-65 NN denotes IκB
T2198 66-72 NN denotes kinase
T2199 73-74 -LRB- denotes (
T2200 74-77 NN denotes IKK
T2201 77-78 -RRB- denotes )
T2202 79-86 NN denotes complex
T2203 87-91 IN denotes with
T2204 92-96 NN denotes CD40
T2205 97-100 VB denotes was
T2206 101-113 JJ denotes undetectable
T2207 114-116 IN denotes in
T2208 117-131 JJ denotes HOIP-deficient
T2209 132-137 NN denotes cells
T7479 43-54 NN denotes association
T7480 55-57 IN denotes of
T7481 58-61 DT denotes the
R1764 T2192 T2189 arg2Of activation,with
R1765 T2192 T2190 arg1Of activation,impaired
R1766 T2192 T2191 arg1Of activation,NF-κB
R1767 T2194 T2188 arg1Of association,Consistent
R1768 T2194 T2195 arg1Of association,of
R1769 T2194 T2203 arg1Of association,with
R1770 T2194 T2205 arg1Of association,was
R1771 T2194 T2206 arg1Of association,undetectable
R1774 T2198 T2197 arg1Of kinase,IκB
R1775 T2198 T2199 arg1Of kinase,(
R1777 T2200 T2199 arg2Of IKK,(
R1779 T2201 T2199 arg3Of ),(
R1780 T2202 T2195 arg2Of complex,of
R1781 T2202 T2196 arg1Of complex,the
R1782 T2202 T2198 arg1Of complex,kinase
R1783 T2204 T2203 arg2Of CD40,with
R1784 T2205 T2188 modOf was,Consistent
R1785 T2205 T2193 arg1Of was,","
R1786 T2205 T2207 arg1Of was,in
R1787 T2206 T2205 arg2Of undetectable,was
R1790 T2209 T2207 arg2Of cells,in
R1791 T2209 T2208 arg1Of cells,HOIP-deficient
R1873 T2188 T2189 arg1Of Consistent,with
R5838 T7479 T7480 arg1Of association,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1677 0-10 JJ denotes Consistent
T1678 11-15 IN denotes with
T1679 16-24 JJ denotes impaired
T1680 25-30 NN denotes NF-κB
T1681 31-41 NN denotes activation
T1682 41-42 , denotes ,
T1683 43-54 NN denotes association
T1684 55-57 IN denotes of
T1685 58-61 DT denotes the
T1686 62-65 NNP denotes IκB
T1687 66-72 NN denotes kinase
T1688 73-74 -LRB- denotes (
T1689 74-77 NNP denotes IKK
T1690 77-78 -RRB- denotes )
T1691 79-86 JJ denotes complex
T1692 87-91 IN denotes with
T1693 92-96 NNP denotes CD40
T1694 97-100 VBD denotes was
T1695 101-113 JJ denotes undetectable
T1696 114-116 IN denotes in
T1697 117-131 JJ denotes HOIP-deficient
T1698 132-137 NNS denotes cells
T1699 137-138 . denotes .
T6734 43-54 NN denotes association
T6735 55-57 IN denotes of
T6736 58-61 DT denotes the
R1295 T1677 T1694 nsubj Consistent,was
R1296 T1678 T1677 prep with,Consistent
R1297 T1679 T1681 amod impaired,activation
R1298 T1680 T1681 compound NF-κB,activation
R1299 T1681 T1678 pobj activation,with
R1300 T1682 T1681 punct ",",activation
R1301 T1683 T1681 conj association,activation
R1302 T1684 T1681 prep of,activation
R1303 T1685 T1687 det the,kinase
R1304 T1686 T1687 compound IκB,kinase
R1305 T1687 T1684 pobj kinase,of
R1306 T1688 T1689 punct (,IKK
R1307 T1689 T1687 appos IKK,kinase
R1308 T1690 T1689 punct ),IKK
R1309 T1691 T1681 amod complex,activation
R1310 T1692 T1681 prep with,activation
R1311 T1693 T1692 pobj CD40,with
R1312 T1694 T1694 ROOT was,was
R1313 T1695 T1694 acomp undetectable,was
R1314 T1696 T1695 prep in,undetectable
R1315 T1697 T1698 amod HOIP-deficient,cells
R1316 T1698 T1696 pobj cells,in
R1317 T1699 T1694 punct .,was
R5093 T6735 T6734 prep of,association

GO-BP

Id Subject Object Predicate Lexical cue
T2365 25-41 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation
T2374 74-77 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK

GO-MF

Id Subject Object Predicate Lexical cue
T2412 74-77 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK

GO-CC

Id Subject Object Predicate Lexical cue
T2420 132-137 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T2424 74-86 http://purl.obolibrary.org/obo/GO_0008385 denotes IKK) complex

sentences

Id Subject Object Predicate Lexical cue
T1197 0-138 Sentence denotes Consistent with impaired NF-κB activation, association of the IκB kinase (IKK) complex with CD40 was undetectable in HOIP-deficient cells.
T32 0-138 Sentence denotes Consistent with impaired NF-κB activation, association of the IκB kinase (IKK) complex with CD40 was undetectable in HOIP-deficient cells.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2289 62-72 Q60680-2 denotes IκB kinase
T2290 62-72 O15111 denotes IκB kinase
T2291 92-96 P25942 denotes CD40
T2292 117-121 Q96EP0 denotes HOIP

test2

Id Subject Object Predicate Lexical cue
T1106 43-54 Binding denotes association
T1107 92-96 Protein denotes CD40
T1108 117-121 Protein denotes HOIP
T1109 122-131 Negative_regulation denotes deficient
T6453 43-54 Binding denotes association
R773 T1107 T1106 themeOf CD40,association
R774 T1108 T1109 themeOf HOIP,deficient