PMC:3148254 / 3240-3425 JSONTXT

Annnotations TAB JSON ListView MergeView

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T1136","span":{"begin":16,"end":25},"obj":"Binding"},{"id":"T1137","span":{"begin":16,"end":25},"obj":"Binding"},{"id":"T1138","span":{"begin":16,"end":25},"obj":"Binding"},{"id":"T1139","span":{"begin":31,"end":35},"obj":"Protein"},{"id":"T1140","span":{"begin":37,"end":42},"obj":"Protein"},{"id":"T1141","span":{"begin":100,"end":105},"obj":"Protein"},{"id":"T1142","span":{"begin":110,"end":115},"obj":"Protein"}],"relations":[{"id":"R789","pred":"themeOf","subj":"T1139","obj":"T1137"},{"id":"R790","pred":"themeOf","subj":"T1139","obj":"T1136"},{"id":"R791","pred":"themeOf","subj":"T1139","obj":"T1138"},{"id":"R792","pred":"themeOf","subj":"T1140","obj":"T1137"},{"id":"R793","pred":"themeOf","subj":"T1141","obj":"T1136"},{"id":"R794","pred":"themeOf","subj":"T1142","obj":"T1138"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"iple TRAFs that associate with CD40, TRAF3 can function as a negative regulator of signaling, while TRAF2 and TRAF6 promote the activation of downstream signaling pathways [4].\nWe recen"}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T2595","span":{"begin":5,"end":10},"obj":"Protein"},{"id":"T2596","span":{"begin":31,"end":35},"obj":"Protein"},{"id":"T2597","span":{"begin":37,"end":42},"obj":"Protein"},{"id":"T2598","span":{"begin":100,"end":105},"obj":"Protein"},{"id":"T2599","span":{"begin":110,"end":115},"obj":"Protein"},{"id":"T2600","span":{"begin":16,"end":25},"obj":"Binding"}],"relations":[{"id":"R2004","pred":"themeOf","subj":"T2595","obj":"T2600"},{"id":"R2005","pred":"themeOf","subj":"T2596","obj":"T2600"}],"text":"iple TRAFs that associate with CD40, TRAF3 can function as a negative regulator of signaling, while TRAF2 and TRAF6 promote the activation of downstream signaling pathways [4].\nWe recen"}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T2665","span":{"begin":16,"end":25},"obj":"Binding"},{"id":"T2666","span":{"begin":16,"end":25},"obj":"Binding"},{"id":"T2667","span":{"begin":16,"end":25},"obj":"Binding"},{"id":"T2668","span":{"begin":31,"end":35},"obj":"Protein"},{"id":"T2669","span":{"begin":37,"end":42},"obj":"Protein"},{"id":"T2670","span":{"begin":100,"end":105},"obj":"Protein"},{"id":"T2671","span":{"begin":110,"end":115},"obj":"Protein"}],"relations":[{"id":"R2028","pred":"themeOf","subj":"T2668","obj":"T2666"},{"id":"R2029","pred":"themeOf","subj":"T2668","obj":"T2665"},{"id":"R2030","pred":"themeOf","subj":"T2668","obj":"T2667"},{"id":"R2031","pred":"themeOf","subj":"T2669","obj":"T2666"},{"id":"R2032","pred":"themeOf","subj":"T2670","obj":"T2665"},{"id":"R2033","pred":"themeOf","subj":"T2671","obj":"T2667"}],"text":"iple TRAFs that associate with CD40, TRAF3 can function as a negative regulator of signaling, while TRAF2 and TRAF6 promote the activation of downstream signaling pathways [4].\nWe recen"}

    bionlp-st-ge-2016-coref

    {"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T2240","span":{"begin":37,"end":42},"obj":"Antecedent"},{"id":"T2241","span":{"begin":100,"end":105},"obj":"Antecedent"},{"id":"T2242","span":{"begin":110,"end":115},"obj":"Antecedent"},{"id":"T2243","span":{"begin":11,"end":15},"obj":"Anaphor"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"iple TRAFs that associate with CD40, TRAF3 can function as a negative regulator of signaling, while TRAF2 and TRAF6 promote the activation of downstream signaling pathways [4].\nWe recen"}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T1951","span":{"begin":5,"end":10},"obj":"NN"},{"id":"T1952","span":{"begin":11,"end":15},"obj":"WDT"},{"id":"T1953","span":{"begin":16,"end":25},"obj":"VB"},{"id":"T1954","span":{"begin":26,"end":30},"obj":"IN"},{"id":"T1955","span":{"begin":31,"end":35},"obj":"NN"},{"id":"T1956","span":{"begin":35,"end":36},"obj":"-COMMA-"},{"id":"T1957","span":{"begin":37,"end":42},"obj":"NN"},{"id":"T1958","span":{"begin":43,"end":46},"obj":"MD"},{"id":"T1959","span":{"begin":47,"end":55},"obj":"VB"},{"id":"T1960","span":{"begin":56,"end":58},"obj":"IN"},{"id":"T1961","span":{"begin":59,"end":60},"obj":"DT"},{"id":"T1962","span":{"begin":61,"end":69},"obj":"JJ"},{"id":"T1963","span":{"begin":70,"end":79},"obj":"NN"},{"id":"T1964","span":{"begin":80,"end":82},"obj":"IN"},{"id":"T1965","span":{"begin":83,"end":92},"obj":"NN"},{"id":"T1966","span":{"begin":92,"end":93},"obj":"-COMMA-"},{"id":"T1967","span":{"begin":94,"end":99},"obj":"IN"},{"id":"T1968","span":{"begin":100,"end":105},"obj":"NN"},{"id":"T1969","span":{"begin":106,"end":109},"obj":"CC"},{"id":"T1970","span":{"begin":110,"end":115},"obj":"NN"},{"id":"T1971","span":{"begin":116,"end":123},"obj":"VB"},{"id":"T1972","span":{"begin":124,"end":127},"obj":"DT"},{"id":"T1973","span":{"begin":128,"end":138},"obj":"NN"},{"id":"T1974","span":{"begin":139,"end":141},"obj":"IN"},{"id":"T1975","span":{"begin":142,"end":152},"obj":"JJ"},{"id":"T1976","span":{"begin":153,"end":162},"obj":"NN"},{"id":"T1977","span":{"begin":163,"end":171},"obj":"NN"},{"id":"T1978","span":{"begin":172,"end":173},"obj":"-LRB-"},{"id":"T1979","span":{"begin":173,"end":174},"obj":"CD"},{"id":"T1980","span":{"begin":174,"end":175},"obj":"-RRB-"},{"id":"T1981","span":{"begin":177,"end":179},"obj":"PRP"}],"relations":[{"id":"R1565","pred":"arg1Of","subj":"T1951","obj":"T1952"},{"id":"R1566","pred":"arg1Of","subj":"T1951","obj":"T1953"},{"id":"R1567","pred":"arg1Of","subj":"T1953","obj":"T1954"},{"id":"R1568","pred":"arg2Of","subj":"T1955","obj":"T1954"},{"id":"R1569","pred":"arg1Of","subj":"T1957","obj":"T1958"},{"id":"R1570","pred":"arg1Of","subj":"T1957","obj":"T1959"},{"id":"R1573","pred":"arg1Of","subj":"T1959","obj":"T1956"},{"id":"R1574","pred":"arg2Of","subj":"T1959","obj":"T1958"},{"id":"R1575","pred":"arg1Of","subj":"T1959","obj":"T1960"},{"id":"R1576","pred":"arg1Of","subj":"T1959","obj":"T1966"},{"id":"R1577","pred":"arg1Of","subj":"T1959","obj":"T1967"},{"id":"R1579","pred":"arg2Of","subj":"T1963","obj":"T1960"},{"id":"R1580","pred":"arg1Of","subj":"T1963","obj":"T1961"},{"id":"R1581","pred":"arg1Of","subj":"T1963","obj":"T1962"},{"id":"R1582","pred":"arg1Of","subj":"T1963","obj":"T1964"},{"id":"R1583","pred":"arg2Of","subj":"T1965","obj":"T1964"},{"id":"R1586","pred":"arg1Of","subj":"T1968","obj":"T1969"},{"id":"R1587","pred":"arg1Of","subj":"T1969","obj":"T1971"},{"id":"R1589","pred":"arg2Of","subj":"T1970","obj":"T1969"},{"id":"R1590","pred":"arg2Of","subj":"T1971","obj":"T1967"},{"id":"R1593","pred":"arg2Of","subj":"T1973","obj":"T1971"},{"id":"R1594","pred":"arg1Of","subj":"T1973","obj":"T1972"},{"id":"R1595","pred":"arg1Of","subj":"T1973","obj":"T1974"},{"id":"R1596","pred":"arg2Of","subj":"T1977","obj":"T1974"},{"id":"R1597","pred":"arg1Of","subj":"T1977","obj":"T1975"},{"id":"R1598","pred":"arg1Of","subj":"T1977","obj":"T1976"},{"id":"R1599","pred":"arg1Of","subj":"T1977","obj":"T1978"},{"id":"R1601","pred":"arg2Of","subj":"T1979","obj":"T1978"},{"id":"R1602","pred":"arg3Of","subj":"T1980","obj":"T1978"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"iple TRAFs that associate with CD40, TRAF3 can function as a negative regulator of signaling, while TRAF2 and TRAF6 promote the activation of downstream signaling pathways [4].\nWe recen"}

    2_test

    {"project":"2_test","denotations":[{"id":"21829693-17633023-89653752","span":{"begin":173,"end":174},"obj":"17633023"},{"id":"T85269","span":{"begin":173,"end":174},"obj":"17633023"}],"text":"iple TRAFs that associate with CD40, TRAF3 can function as a negative regulator of signaling, while TRAF2 and TRAF6 promote the activation of downstream signaling pathways [4].\nWe recen"}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1433","span":{"begin":5,"end":10},"obj":"NNS"},{"id":"T1434","span":{"begin":11,"end":15},"obj":"WDT"},{"id":"T1435","span":{"begin":16,"end":25},"obj":"VBP"},{"id":"T1436","span":{"begin":26,"end":30},"obj":"IN"},{"id":"T1437","span":{"begin":31,"end":35},"obj":"NNP"},{"id":"T1438","span":{"begin":35,"end":36},"obj":","},{"id":"T1439","span":{"begin":37,"end":42},"obj":"NNP"},{"id":"T1440","span":{"begin":43,"end":46},"obj":"MD"},{"id":"T1441","span":{"begin":47,"end":55},"obj":"VB"},{"id":"T1442","span":{"begin":56,"end":58},"obj":"IN"},{"id":"T1443","span":{"begin":59,"end":60},"obj":"DT"},{"id":"T1444","span":{"begin":61,"end":69},"obj":"JJ"},{"id":"T1445","span":{"begin":70,"end":79},"obj":"NN"},{"id":"T1446","span":{"begin":80,"end":82},"obj":"IN"},{"id":"T1447","span":{"begin":83,"end":92},"obj":"VBG"},{"id":"T1448","span":{"begin":92,"end":93},"obj":","},{"id":"T1449","span":{"begin":94,"end":99},"obj":"IN"},{"id":"T1450","span":{"begin":100,"end":105},"obj":"CD"},{"id":"T1451","span":{"begin":106,"end":109},"obj":"CC"},{"id":"T1452","span":{"begin":110,"end":115},"obj":"CD"},{"id":"T1453","span":{"begin":116,"end":123},"obj":"VB"},{"id":"T1454","span":{"begin":124,"end":127},"obj":"DT"},{"id":"T1455","span":{"begin":128,"end":138},"obj":"NN"},{"id":"T1456","span":{"begin":139,"end":141},"obj":"IN"},{"id":"T1457","span":{"begin":142,"end":152},"obj":"JJ"},{"id":"T1458","span":{"begin":153,"end":162},"obj":"VBG"},{"id":"T1459","span":{"begin":163,"end":171},"obj":"NNS"},{"id":"T1460","span":{"begin":172,"end":173},"obj":"NNP"},{"id":"T1461","span":{"begin":173,"end":174},"obj":"CD"},{"id":"T1462","span":{"begin":174,"end":175},"obj":"NNP"},{"id":"T1463","span":{"begin":175,"end":176},"obj":"."},{"id":"T1464","span":{"begin":177,"end":179},"obj":"PRP"}],"relations":[{"id":"R1052","pred":"nsubj","subj":"T1434","obj":"T1435"},{"id":"R1053","pred":"relcl","subj":"T1435","obj":"T1433"},{"id":"R1054","pred":"prep","subj":"T1436","obj":"T1435"},{"id":"R1055","pred":"pobj","subj":"T1437","obj":"T1436"},{"id":"R1056","pred":"punct","subj":"T1438","obj":"T1441"},{"id":"R1057","pred":"nsubj","subj":"T1439","obj":"T1441"},{"id":"R1058","pred":"aux","subj":"T1440","obj":"T1441"},{"id":"R1059","pred":"ROOT","subj":"T1441","obj":"T1441"},{"id":"R1060","pred":"prep","subj":"T1442","obj":"T1441"},{"id":"R1061","pred":"det","subj":"T1443","obj":"T1445"},{"id":"R1062","pred":"amod","subj":"T1444","obj":"T1445"},{"id":"R1063","pred":"pobj","subj":"T1445","obj":"T1442"},{"id":"R1064","pred":"prep","subj":"T1446","obj":"T1445"},{"id":"R1065","pred":"pcomp","subj":"T1447","obj":"T1446"},{"id":"R1066","pred":"punct","subj":"T1448","obj":"T1441"},{"id":"R1067","pred":"mark","subj":"T1449","obj":"T1453"},{"id":"R1068","pred":"nsubj","subj":"T1450","obj":"T1453"},{"id":"R1069","pred":"cc","subj":"T1451","obj":"T1450"},{"id":"R1070","pred":"conj","subj":"T1452","obj":"T1450"},{"id":"R1071","pred":"advcl","subj":"T1453","obj":"T1441"},{"id":"R1072","pred":"det","subj":"T1454","obj":"T1455"},{"id":"R1073","pred":"dobj","subj":"T1455","obj":"T1453"},{"id":"R1074","pred":"prep","subj":"T1456","obj":"T1455"},{"id":"R1075","pred":"amod","subj":"T1457","obj":"T1459"},{"id":"R1076","pred":"compound","subj":"T1458","obj":"T1459"},{"id":"R1077","pred":"pobj","subj":"T1459","obj":"T1456"},{"id":"R1078","pred":"nmod","subj":"T1460","obj":"T1462"},{"id":"R1079","pred":"nummod","subj":"T1461","obj":"T1462"},{"id":"R1080","pred":"appos","subj":"T1462","obj":"T1455"},{"id":"R1081","pred":"punct","subj":"T1463","obj":"T1441"}],"text":"iple TRAFs that associate with CD40, TRAF3 can function as a negative regulator of signaling, while TRAF2 and TRAF6 promote the activation of downstream signaling pathways [4].\nWe recen"}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T2318","span":{"begin":83,"end":92},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T2319","span":{"begin":153,"end":162},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T2342","span":{"begin":153,"end":171},"obj":"http://purl.obolibrary.org/obo/GO_0007165"},{"id":"T2360","span":{"begin":153,"end":174},"obj":"http://purl.obolibrary.org/obo/GO_0007214"}],"text":"iple TRAFs that associate with CD40, TRAF3 can function as a negative regulator of signaling, while TRAF2 and TRAF6 promote the activation of downstream signaling pathways [4].\nWe recen"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T2264","span":{"begin":31,"end":35},"obj":"P25942"},{"id":"T2265","span":{"begin":37,"end":42},"obj":"Q13114"},{"id":"T2266","span":{"begin":100,"end":105},"obj":"Q12933"},{"id":"T2267","span":{"begin":110,"end":115},"obj":"Q9Y4K3"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"iple TRAFs that associate with CD40, TRAF3 can function as a negative regulator of signaling, while TRAF2 and TRAF6 promote the activation of downstream signaling pathways [4].\nWe recen"}

    test2

    {"project":"test2","denotations":[{"id":"T1068","span":{"begin":16,"end":25},"obj":"Binding"},{"id":"T1069","span":{"begin":31,"end":35},"obj":"Protein"},{"id":"T1070","span":{"begin":37,"end":42},"obj":"Protein"},{"id":"T1071","span":{"begin":100,"end":105},"obj":"Protein"},{"id":"T1072","span":{"begin":110,"end":115},"obj":"Protein"}],"relations":[{"id":"R750","pred":"themeOf","subj":"T1069","obj":"T1068"},{"id":"R751","pred":"themeOf","subj":"T1070","obj":"T1068"},{"id":"R752","pred":"themeOf","subj":"T1071","obj":"T1068"},{"id":"R753","pred":"themeOf","subj":"T1072","obj":"T1068"}],"attributes":[{"id":"M4","pred":"Negation","subj":"T1072","obj":"true"}],"text":"iple TRAFs that associate with CD40, TRAF3 can function as a negative regulator of signaling, while TRAF2 and TRAF6 promote the activation of downstream signaling pathways [4].\nWe recen"}