PMC:3148254 / 25325-25510 JSONTXT

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    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T9144","span":{"begin":71,"end":76},"obj":"Protein"},{"id":"T9145","span":{"begin":81,"end":85},"obj":"Protein"},{"id":"T9146","span":{"begin":89,"end":93},"obj":"Protein"},{"id":"T9147","span":{"begin":162,"end":167},"obj":"Protein"},{"id":"T9148","span":{"begin":179,"end":184},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"While our previous work indicated a potentially important link between TRAF2 and HOIP in CD40 signaling, the signals and functions tested here are dependent upon TRAF6 as well as TRAF2."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T11721","span":{"begin":71,"end":76},"obj":"Protein"},{"id":"T11722","span":{"begin":81,"end":85},"obj":"Protein"},{"id":"T11723","span":{"begin":89,"end":93},"obj":"Protein"},{"id":"T11724","span":{"begin":162,"end":167},"obj":"Protein"},{"id":"T11725","span":{"begin":179,"end":184},"obj":"Protein"},{"id":"T11726","span":{"begin":58,"end":62},"obj":"Binding"},{"id":"T11727","span":{"begin":147,"end":156},"obj":"Positive_regulation"},{"id":"T11728","span":{"begin":147,"end":156},"obj":"Positive_regulation"}],"relations":[{"id":"R9128","pred":"themeOf","subj":"T11721","obj":"T11726"},{"id":"R9129","pred":"themeOf","subj":"T11722","obj":"T11726"},{"id":"R9131","pred":"themeOf","subj":"T11724","obj":"T11727"},{"id":"R9132","pred":"themeOf","subj":"T11725","obj":"T11728"}],"text":"While our previous work indicated a potentially important link between TRAF2 and HOIP in CD40 signaling, the signals and functions tested here are dependent upon TRAF6 as well as TRAF2."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T11866","span":{"begin":71,"end":76},"obj":"Protein"},{"id":"T11867","span":{"begin":81,"end":85},"obj":"Protein"},{"id":"T11868","span":{"begin":89,"end":93},"obj":"Protein"},{"id":"T11869","span":{"begin":162,"end":167},"obj":"Protein"},{"id":"T11870","span":{"begin":179,"end":184},"obj":"Protein"}],"text":"While our previous work indicated a potentially important link between TRAF2 and HOIP in CD40 signaling, the signals and functions tested here are dependent upon TRAF6 as well as TRAF2."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T10736","span":{"begin":0,"end":5},"obj":"IN"},{"id":"T10737","span":{"begin":6,"end":9},"obj":"PRP-DOLLAR-"},{"id":"T10738","span":{"begin":10,"end":18},"obj":"JJ"},{"id":"T10739","span":{"begin":19,"end":23},"obj":"NN"},{"id":"T10740","span":{"begin":24,"end":33},"obj":"VB"},{"id":"T10741","span":{"begin":34,"end":35},"obj":"DT"},{"id":"T10742","span":{"begin":36,"end":47},"obj":"RB"},{"id":"T10743","span":{"begin":48,"end":57},"obj":"JJ"},{"id":"T10744","span":{"begin":58,"end":62},"obj":"NN"},{"id":"T10745","span":{"begin":63,"end":70},"obj":"IN"},{"id":"T10746","span":{"begin":71,"end":76},"obj":"NN"},{"id":"T10747","span":{"begin":77,"end":80},"obj":"CC"},{"id":"T10748","span":{"begin":81,"end":85},"obj":"NN"},{"id":"T10749","span":{"begin":86,"end":88},"obj":"IN"},{"id":"T10750","span":{"begin":89,"end":93},"obj":"NN"},{"id":"T10751","span":{"begin":94,"end":103},"obj":"NN"},{"id":"T10752","span":{"begin":103,"end":104},"obj":"-COMMA-"},{"id":"T10753","span":{"begin":105,"end":108},"obj":"DT"},{"id":"T10754","span":{"begin":109,"end":116},"obj":"NN"},{"id":"T10755","span":{"begin":117,"end":120},"obj":"CC"},{"id":"T10756","span":{"begin":121,"end":130},"obj":"NN"},{"id":"T10757","span":{"begin":131,"end":137},"obj":"VB"},{"id":"T10758","span":{"begin":138,"end":142},"obj":"RB"},{"id":"T10759","span":{"begin":143,"end":146},"obj":"VB"},{"id":"T10760","span":{"begin":147,"end":156},"obj":"JJ"},{"id":"T10761","span":{"begin":157,"end":161},"obj":"IN"},{"id":"T10762","span":{"begin":162,"end":167},"obj":"NN"},{"id":"T10763","span":{"begin":168,"end":170},"obj":"RB"},{"id":"T10764","span":{"begin":171,"end":175},"obj":"RB"},{"id":"T10765","span":{"begin":176,"end":178},"obj":"IN"},{"id":"T10766","span":{"begin":179,"end":184},"obj":"NN"}],"relations":[{"id":"R8544","pred":"arg2Of","subj":"T10751","obj":"T10749"},{"id":"R8545","pred":"arg1Of","subj":"T10751","obj":"T10750"},{"id":"R8549","pred":"arg1Of","subj":"T10754","obj":"T10755"},{"id":"R8550","pred":"arg1Of","subj":"T10755","obj":"T10753"},{"id":"R8551","pred":"arg2Of","subj":"T10755","obj":"T10757"},{"id":"R8552","pred":"arg1Of","subj":"T10755","obj":"T10759"},{"id":"R8553","pred":"arg1Of","subj":"T10755","obj":"T10760"},{"id":"R8554","pred":"arg2Of","subj":"T10756","obj":"T10755"},{"id":"R8555","pred":"arg1Of","subj":"T10757","obj":"T10758"},{"id":"R8559","pred":"arg1Of","subj":"T10759","obj":"T10736"},{"id":"R8560","pred":"arg1Of","subj":"T10759","obj":"T10752"},{"id":"R8561","pred":"arg2Of","subj":"T10760","obj":"T10759"},{"id":"R8562","pred":"arg1Of","subj":"T10760","obj":"T10761"},{"id":"R8564","pred":"arg1Of","subj":"T10762","obj":"T10765"},{"id":"R8567","pred":"arg2Of","subj":"T10765","obj":"T10761"},{"id":"R8568","pred":"arg1Of","subj":"T10765","obj":"T10763"},{"id":"R8569","pred":"arg1Of","subj":"T10765","obj":"T10764"},{"id":"R8570","pred":"arg2Of","subj":"T10766","obj":"T10765"},{"id":"R8605","pred":"arg1Of","subj":"T10739","obj":"T10737"},{"id":"R8614","pred":"arg1Of","subj":"T10739","obj":"T10738"},{"id":"R8620","pred":"arg1Of","subj":"T10739","obj":"T10740"},{"id":"R8622","pred":"arg2Of","subj":"T10740","obj":"T10736"},{"id":"R8626","pred":"arg1Of","subj":"T10743","obj":"T10742"},{"id":"R8628","pred":"arg2Of","subj":"T10744","obj":"T10740"},{"id":"R8633","pred":"arg1Of","subj":"T10744","obj":"T10741"},{"id":"R8635","pred":"arg1Of","subj":"T10744","obj":"T10743"},{"id":"R8638","pred":"arg1Of","subj":"T10744","obj":"T10745"},{"id":"R8640","pred":"arg1Of","subj":"T10746","obj":"T10747"},{"id":"R8642","pred":"arg2Of","subj":"T10747","obj":"T10745"},{"id":"R8645","pred":"arg1Of","subj":"T10747","obj":"T10749"},{"id":"R8646","pred":"arg2Of","subj":"T10748","obj":"T10747"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"While our previous work indicated a potentially important link between TRAF2 and HOIP in CD40 signaling, the signals and functions tested here are dependent upon TRAF6 as well as TRAF2."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T9781","span":{"begin":0,"end":5},"obj":"IN"},{"id":"T9782","span":{"begin":6,"end":9},"obj":"PRP$"},{"id":"T9783","span":{"begin":10,"end":18},"obj":"JJ"},{"id":"T9784","span":{"begin":19,"end":23},"obj":"NN"},{"id":"T9785","span":{"begin":24,"end":33},"obj":"VBD"},{"id":"T9786","span":{"begin":34,"end":35},"obj":"DT"},{"id":"T9787","span":{"begin":36,"end":47},"obj":"RB"},{"id":"T9788","span":{"begin":48,"end":57},"obj":"JJ"},{"id":"T9789","span":{"begin":58,"end":62},"obj":"NN"},{"id":"T9790","span":{"begin":63,"end":70},"obj":"IN"},{"id":"T9791","span":{"begin":71,"end":76},"obj":"CD"},{"id":"T9792","span":{"begin":77,"end":80},"obj":"CC"},{"id":"T9793","span":{"begin":81,"end":85},"obj":"NNP"},{"id":"T9794","span":{"begin":86,"end":88},"obj":"IN"},{"id":"T9795","span":{"begin":89,"end":93},"obj":"NNP"},{"id":"T9796","span":{"begin":94,"end":103},"obj":"VBG"},{"id":"T9797","span":{"begin":103,"end":104},"obj":","},{"id":"T9798","span":{"begin":105,"end":108},"obj":"DT"},{"id":"T9799","span":{"begin":109,"end":116},"obj":"NNS"},{"id":"T9800","span":{"begin":117,"end":120},"obj":"CC"},{"id":"T9801","span":{"begin":121,"end":130},"obj":"NNS"},{"id":"T9802","span":{"begin":131,"end":137},"obj":"VBN"},{"id":"T9803","span":{"begin":138,"end":142},"obj":"RB"},{"id":"T9804","span":{"begin":143,"end":146},"obj":"VBP"},{"id":"T9805","span":{"begin":147,"end":156},"obj":"JJ"},{"id":"T9806","span":{"begin":157,"end":161},"obj":"IN"},{"id":"T9807","span":{"begin":162,"end":167},"obj":"CD"},{"id":"T9808","span":{"begin":168,"end":170},"obj":"RB"},{"id":"T9809","span":{"begin":171,"end":175},"obj":"RB"},{"id":"T9810","span":{"begin":176,"end":178},"obj":"IN"},{"id":"T9811","span":{"begin":179,"end":184},"obj":"CD"},{"id":"T9812","span":{"begin":184,"end":185},"obj":"."}],"relations":[{"id":"R7593","pred":"mark","subj":"T9781","obj":"T9785"},{"id":"R7594","pred":"poss","subj":"T9782","obj":"T9784"},{"id":"R7595","pred":"amod","subj":"T9783","obj":"T9784"},{"id":"R7596","pred":"nsubj","subj":"T9784","obj":"T9785"},{"id":"R7597","pred":"advcl","subj":"T9785","obj":"T9804"},{"id":"R7598","pred":"det","subj":"T9786","obj":"T9789"},{"id":"R7599","pred":"advmod","subj":"T9787","obj":"T9788"},{"id":"R7600","pred":"amod","subj":"T9788","obj":"T9789"},{"id":"R7601","pred":"dobj","subj":"T9789","obj":"T9785"},{"id":"R7602","pred":"prep","subj":"T9790","obj":"T9789"},{"id":"R7603","pred":"pobj","subj":"T9791","obj":"T9790"},{"id":"R7604","pred":"cc","subj":"T9792","obj":"T9791"},{"id":"R7605","pred":"conj","subj":"T9793","obj":"T9791"},{"id":"R7606","pred":"prep","subj":"T9794","obj":"T9793"},{"id":"R7607","pred":"pobj","subj":"T9795","obj":"T9794"},{"id":"R7608","pred":"advcl","subj":"T9796","obj":"T9793"},{"id":"R7609","pred":"punct","subj":"T9797","obj":"T9796"},{"id":"R7610","pred":"det","subj":"T9798","obj":"T9799"},{"id":"R7611","pred":"dobj","subj":"T9799","obj":"T9796"},{"id":"R7612","pred":"cc","subj":"T9800","obj":"T9799"},{"id":"R7613","pred":"conj","subj":"T9801","obj":"T9799"},{"id":"R7614","pred":"acl","subj":"T9802","obj":"T9799"},{"id":"R7615","pred":"advmod","subj":"T9803","obj":"T9802"},{"id":"R7616","pred":"ROOT","subj":"T9804","obj":"T9804"},{"id":"R7617","pred":"acomp","subj":"T9805","obj":"T9804"},{"id":"R7618","pred":"prep","subj":"T9806","obj":"T9804"},{"id":"R7619","pred":"pobj","subj":"T9807","obj":"T9806"},{"id":"R7620","pred":"advmod","subj":"T9808","obj":"T9810"},{"id":"R7621","pred":"advmod","subj":"T9809","obj":"T9810"},{"id":"R7622","pred":"cc","subj":"T9810","obj":"T9807"},{"id":"R7623","pred":"conj","subj":"T9811","obj":"T9807"},{"id":"R7624","pred":"punct","subj":"T9812","obj":"T9804"}],"text":"While our previous work indicated a potentially important link between TRAF2 and HOIP in CD40 signaling, the signals and functions tested here are dependent upon TRAF6 as well as TRAF2."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T11274","span":{"begin":109,"end":116},"obj":"http://purl.obolibrary.org/obo/GO_0023052"}],"text":"While our previous work indicated a potentially important link between TRAF2 and HOIP in CD40 signaling, the signals and functions tested here are dependent upon TRAF6 as well as TRAF2."}

    sentences

    {"project":"sentences","denotations":[{"id":"T9212","span":{"begin":0,"end":185},"obj":"Sentence"},{"id":"T170","span":{"begin":0,"end":185},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"While our previous work indicated a potentially important link between TRAF2 and HOIP in CD40 signaling, the signals and functions tested here are dependent upon TRAF6 as well as TRAF2."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T11205","span":{"begin":71,"end":76},"obj":"Q12933"},{"id":"T11206","span":{"begin":81,"end":85},"obj":"Q96EP0"},{"id":"T11207","span":{"begin":89,"end":93},"obj":"P25942"},{"id":"T11208","span":{"begin":162,"end":167},"obj":"Q9Y4K3"},{"id":"T11209","span":{"begin":179,"end":184},"obj":"Q12933"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"While our previous work indicated a potentially important link between TRAF2 and HOIP in CD40 signaling, the signals and functions tested here are dependent upon TRAF6 as well as TRAF2."}

    test2

    {"project":"test2","denotations":[{"id":"T9004","span":{"begin":71,"end":76},"obj":"Protein"},{"id":"T9005","span":{"begin":81,"end":85},"obj":"Protein"},{"id":"T9006","span":{"begin":89,"end":93},"obj":"Protein"},{"id":"T9007","span":{"begin":147,"end":156},"obj":"Regulation"},{"id":"T9008","span":{"begin":162,"end":167},"obj":"Protein"},{"id":"T9009","span":{"begin":179,"end":184},"obj":"Protein"}],"relations":[{"id":"R6945","pred":"causeOf","subj":"T9009","obj":"T9007"}],"text":"While our previous work indicated a potentially important link between TRAF2 and HOIP in CD40 signaling, the signals and functions tested here are dependent upon TRAF6 as well as TRAF2."}