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PMC:3148254 / 21289-21543 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T6688 72-76 Protein denotes IKKγ
T6689 80-84 Protein denotes CD40

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T8684 80-84 Protein denotes CD40
T8685 145-163 Protein denotes lambda phosphatase

events-check-again

Id Subject Object Predicate Lexical cue
T8783 72-76 Protein denotes IKKγ
T8784 80-84 Protein denotes CD40

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8057 0-2 TO denotes To
T8058 3-12 VB denotes determine
T8059 13-17 WP denotes what
T8060 18-21 VB denotes was
T8061 22-33 JJ denotes responsible
T8062 34-37 IN denotes for
T8063 38-41 DT denotes the
T8064 42-51 VB denotes increased
T8065 52-61 JJ denotes molecular
T8066 62-68 NN denotes weight
T8067 69-71 IN denotes of
T8068 72-76 NN denotes IKKγ
T8069 77-79 IN denotes in
T8070 80-84 NN denotes CD40
T8071 85-103 NN denotes immunoprecipitates
T8072 103-104 -COMMA- denotes ,
T8073 105-108 DT denotes the
T8074 109-116 NN denotes protein
T8075 117-124 NN denotes samples
T8076 125-129 VB denotes were
T8077 130-139 VB denotes incubated
T8078 140-144 IN denotes with
T8079 145-151 NN denotes lambda
T8080 152-163 NN denotes phosphatase
T8081 163-164 -COMMA- denotes ,
T8082 165-170 WDT denotes which
T8083 171-178 VB denotes removes
T8084 179-189 NN denotes phosphates
T8085 190-198 VB denotes attached
T8086 199-201 TO denotes to
T8087 202-210 NN denotes tyrosine
T8088 210-211 -COMMA- denotes ,
T8089 212-221 NN denotes threonine
T8090 221-222 -COMMA- denotes ,
T8091 223-225 CC denotes or
T8092 226-232 NN denotes serine
T8093 233-241 NN denotes residues
T8094 242-244 IN denotes in
T8095 245-253 NN denotes proteins
R6389 T8058 T8057 arg1Of determine,To
R6393 T8059 T8058 arg2Of what,determine
R6402 T8059 T8060 arg1Of what,was
R6404 T8059 T8061 arg1Of what,responsible
R6405 T8061 T8060 arg2Of responsible,was
R6410 T8061 T8062 arg1Of responsible,for
R6413 T8066 T8062 arg2Of weight,for
R6420 T8066 T8063 arg1Of weight,the
R6421 T8066 T8064 arg2Of weight,increased
R6422 T8066 T8065 arg1Of weight,molecular
R6423 T8066 T8067 arg1Of weight,of
R6424 T8066 T8069 arg1Of weight,in
R6425 T8068 T8067 arg2Of IKKγ,of
R6426 T8071 T8069 arg2Of immunoprecipitates,in
R6428 T8071 T8070 arg1Of immunoprecipitates,CD40
R6433 T8075 T8073 arg1Of samples,the
R6445 T8075 T8074 arg1Of samples,protein
R6446 T8075 T8076 arg1Of samples,were
R6448 T8075 T8077 arg2Of samples,incubated
R6449 T8077 T8057 modOf incubated,To
R6457 T8077 T8072 arg1Of incubated,","
R6462 T8077 T8076 arg2Of incubated,were
R6463 T8077 T8078 arg1Of incubated,with
R6467 T8080 T8078 arg2Of phosphatase,with
R6469 T8080 T8079 arg1Of phosphatase,lambda
R6470 T8080 T8081 arg1Of phosphatase,","
R6471 T8080 T8082 arg1Of phosphatase,which
R6472 T8080 T8083 arg1Of phosphatase,removes
R6473 T8084 T8083 arg2Of phosphates,removes
R6474 T8084 T8085 arg2Of phosphates,attached
R6475 T8085 T8086 arg1Of attached,to
R6477 T8087 T8088 arg1Of tyrosine,","
R6481 T8088 T8091 arg1Of ",",or
R6483 T8089 T8088 arg2Of threonine,","
R6484 T8091 T8086 arg2Of or,to
R6485 T8091 T8090 arg1Of or,","
R6486 T8091 T8094 arg1Of or,in
R6487 T8093 T8091 arg2Of residues,or
R6488 T8093 T8092 arg1Of residues,serine
R6489 T8095 T8094 arg2Of proteins,in

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7346 0-2 TO denotes To
T7347 3-12 VB denotes determine
T7348 13-17 WP denotes what
T7349 18-21 VBD denotes was
T7350 22-33 JJ denotes responsible
T7351 34-37 IN denotes for
T7352 38-41 DT denotes the
T7353 42-51 VBN denotes increased
T7354 52-61 JJ denotes molecular
T7355 62-68 NN denotes weight
T7356 69-71 IN denotes of
T7357 72-76 NNP denotes IKKγ
T7358 77-79 IN denotes in
T7359 80-84 NNP denotes CD40
T7360 85-103 NNS denotes immunoprecipitates
T7361 103-104 , denotes ,
T7362 105-108 DT denotes the
T7363 109-116 NN denotes protein
T7364 117-124 NNS denotes samples
T7365 125-129 VBD denotes were
T7366 130-139 VBN denotes incubated
T7367 140-144 IN denotes with
T7368 145-151 JJ denotes lambda
T7369 152-163 NN denotes phosphatase
T7370 163-164 , denotes ,
T7371 165-170 WDT denotes which
T7372 171-178 VBZ denotes removes
T7373 179-189 NNS denotes phosphates
T7374 190-198 VBN denotes attached
T7375 199-201 TO denotes to
T7376 202-210 VB denotes tyrosine
T7377 210-211 , denotes ,
T7378 212-221 NN denotes threonine
T7379 221-222 , denotes ,
T7380 223-225 CC denotes or
T7381 226-232 NN denotes serine
T7382 233-241 NNS denotes residues
T7383 242-244 IN denotes in
T7384 245-253 NNS denotes proteins
T7385 253-254 . denotes .
R5704 T7346 T7347 aux To,determine
R5705 T7347 T7366 advcl determine,incubated
R5706 T7348 T7349 nsubj what,was
R5707 T7349 T7347 ccomp was,determine
R5708 T7350 T7349 acomp responsible,was
R5709 T7351 T7350 prep for,responsible
R5710 T7352 T7355 det the,weight
R5711 T7353 T7355 amod increased,weight
R5712 T7354 T7355 amod molecular,weight
R5713 T7355 T7351 pobj weight,for
R5714 T7356 T7355 prep of,weight
R5715 T7357 T7356 pobj IKKγ,of
R5716 T7358 T7355 prep in,weight
R5717 T7359 T7360 compound CD40,immunoprecipitates
R5718 T7360 T7358 pobj immunoprecipitates,in
R5719 T7361 T7366 punct ",",incubated
R5720 T7362 T7364 det the,samples
R5721 T7363 T7364 compound protein,samples
R5722 T7364 T7366 nsubjpass samples,incubated
R5723 T7365 T7366 auxpass were,incubated
R5724 T7366 T7366 ROOT incubated,incubated
R5725 T7367 T7366 prep with,incubated
R5726 T7368 T7369 compound lambda,phosphatase
R5727 T7369 T7367 pobj phosphatase,with
R5728 T7370 T7369 punct ",",phosphatase
R5729 T7371 T7372 nsubj which,removes
R5730 T7372 T7369 relcl removes,phosphatase
R5731 T7373 T7372 dobj phosphates,removes
R5732 T7374 T7373 acl attached,phosphates
R5733 T7375 T7376 aux to,tyrosine
R5734 T7376 T7374 xcomp tyrosine,attached
R5735 T7377 T7376 punct ",",tyrosine
R5736 T7378 T7376 conj threonine,tyrosine
R5737 T7379 T7378 punct ",",threonine
R5738 T7380 T7378 cc or,threonine
R5739 T7381 T7378 conj serine,threonine
R5740 T7382 T7378 conj residues,threonine
R5741 T7383 T7382 prep in,residues
R5742 T7384 T7383 pobj proteins,in
R5743 T7385 T7366 punct .,incubated

GO-BP

Id Subject Object Predicate Lexical cue
T8301 152-163 http://purl.obolibrary.org/obo/GO_0016791 denotes phosphatase

GO-MF

Id Subject Object Predicate Lexical cue
T8309 152-163 http://purl.obolibrary.org/obo/GO_0016791 denotes phosphatase

sentences

Id Subject Object Predicate Lexical cue
T6726 0-254 Sentence denotes To determine what was responsible for the increased molecular weight of IKKγ in CD40 immunoprecipitates, the protein samples were incubated with lambda phosphatase, which removes phosphates attached to tyrosine, threonine, or serine residues in proteins.
T145 0-254 Sentence denotes To determine what was responsible for the increased molecular weight of IKKγ in CD40 immunoprecipitates, the protein samples were incubated with lambda phosphatase, which removes phosphates attached to tyrosine, threonine, or serine residues in proteins.

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8249 80-84 P25942 denotes CD40

test2

Id Subject Object Predicate Lexical cue
T6554 42-51 Positive_regulation denotes increased
T6555 72-76 Protein denotes IKKγ
T6556 80-84 Protein denotes CD40
R4987 T6555 T6554 themeOf IKKγ,increased
R4988 T6556 T6554 themeOf CD40,increased