PMC:3148254 / 2082-2215
Annnotations
bionlp-st-ge-2016-reference
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bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T2562","span":{"begin":0,"end":4},"obj":"Protein"},{"id":"T2563","span":{"begin":76,"end":80},"obj":"Protein"},{"id":"T2564","span":{"begin":82,"end":87},"obj":"Protein"},{"id":"T2565","span":{"begin":18,"end":27},"obj":"Positive_regulation"},{"id":"T2566","span":{"begin":92,"end":101},"obj":"Gene_expression"},{"id":"T2567","span":{"begin":92,"end":101},"obj":"Gene_expression"}],"relations":[{"id":"R1966","pred":"themeOf","subj":"T2562","obj":"T2565"},{"id":"R1968","pred":"themeOf","subj":"T2563","obj":"T2566"},{"id":"R1969","pred":"themeOf","subj":"T2564","obj":"T2567"}],"text":"CD40 signaling is activated in a T cell-dependent manner, as the ligand for CD40, CD154, is expressed primarily by activated T cells."}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T2644","span":{"begin":0,"end":4},"obj":"Protein"},{"id":"T2645","span":{"begin":76,"end":80},"obj":"Protein"},{"id":"T2646","span":{"begin":82,"end":87},"obj":"Protein"},{"id":"T2647","span":{"begin":92,"end":101},"obj":"Gene_expression"}],"relations":[{"id":"R2010","pred":"themeOf","subj":"T2646","obj":"T2647"}],"text":"CD40 signaling is activated in a T cell-dependent manner, as the ligand for CD40, CD154, is expressed primarily by activated T cells."}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T1765","span":{"begin":0,"end":4},"obj":"NN"},{"id":"T1766","span":{"begin":5,"end":14},"obj":"NN"},{"id":"T1767","span":{"begin":15,"end":17},"obj":"VB"},{"id":"T1768","span":{"begin":18,"end":27},"obj":"VB"},{"id":"T1769","span":{"begin":28,"end":30},"obj":"IN"},{"id":"T1770","span":{"begin":31,"end":32},"obj":"DT"},{"id":"T1771","span":{"begin":33,"end":34},"obj":"NN"},{"id":"T1772","span":{"begin":35,"end":49},"obj":"JJ"},{"id":"T1773","span":{"begin":50,"end":56},"obj":"NN"},{"id":"T1774","span":{"begin":56,"end":57},"obj":"-COMMA-"},{"id":"T1775","span":{"begin":58,"end":60},"obj":"IN"},{"id":"T1776","span":{"begin":61,"end":64},"obj":"DT"},{"id":"T1777","span":{"begin":65,"end":71},"obj":"NN"},{"id":"T1778","span":{"begin":72,"end":75},"obj":"IN"},{"id":"T1779","span":{"begin":76,"end":80},"obj":"NN"},{"id":"T1780","span":{"begin":80,"end":81},"obj":"-COMMA-"},{"id":"T1781","span":{"begin":82,"end":87},"obj":"NN"},{"id":"T1782","span":{"begin":87,"end":88},"obj":"-COMMA-"},{"id":"T1783","span":{"begin":89,"end":91},"obj":"VB"},{"id":"T1784","span":{"begin":92,"end":101},"obj":"VB"},{"id":"T1785","span":{"begin":102,"end":111},"obj":"RB"},{"id":"T1786","span":{"begin":112,"end":114},"obj":"IN"},{"id":"T1787","span":{"begin":115,"end":124},"obj":"VB"},{"id":"T1788","span":{"begin":125,"end":126},"obj":"NN"},{"id":"T1789","span":{"begin":127,"end":132},"obj":"NN"}],"relations":[{"id":"R1384","pred":"arg1Of","subj":"T1766","obj":"T1765"},{"id":"R1385","pred":"arg1Of","subj":"T1766","obj":"T1767"},{"id":"R1386","pred":"arg2Of","subj":"T1766","obj":"T1768"},{"id":"R1387","pred":"arg2Of","subj":"T1768","obj":"T1767"},{"id":"R1388","pred":"arg1Of","subj":"T1768","obj":"T1769"},{"id":"R1389","pred":"arg1Of","subj":"T1768","obj":"T1774"},{"id":"R1390","pred":"arg1Of","subj":"T1768","obj":"T1775"},{"id":"R1391","pred":"arg2Of","subj":"T1773","obj":"T1769"},{"id":"R1392","pred":"arg1Of","subj":"T1773","obj":"T1770"},{"id":"R1393","pred":"arg1Of","subj":"T1773","obj":"T1771"},{"id":"R1394","pred":"arg1Of","subj":"T1773","obj":"T1772"},{"id":"R1395","pred":"arg1Of","subj":"T1777","obj":"T1776"},{"id":"R1396","pred":"arg1Of","subj":"T1777","obj":"T1778"},{"id":"R1397","pred":"arg1Of","subj":"T1777","obj":"T1783"},{"id":"R1398","pred":"arg2Of","subj":"T1777","obj":"T1784"},{"id":"R1399","pred":"arg2Of","subj":"T1779","obj":"T1778"},{"id":"R1400","pred":"arg1Of","subj":"T1779","obj":"T1780"},{"id":"R1401","pred":"arg2Of","subj":"T1781","obj":"T1780"},{"id":"R1402","pred":"arg2Of","subj":"T1784","obj":"T1775"},{"id":"R1403","pred":"arg1Of","subj":"T1784","obj":"T1782"},{"id":"R1404","pred":"arg2Of","subj":"T1784","obj":"T1783"},{"id":"R1405","pred":"arg1Of","subj":"T1784","obj":"T1785"},{"id":"R1406","pred":"arg1Of","subj":"T1789","obj":"T1784"},{"id":"R1407","pred":"arg2Of","subj":"T1789","obj":"T1786"},{"id":"R1408","pred":"arg2Of","subj":"T1789","obj":"T1787"},{"id":"R1409","pred":"arg1Of","subj":"T1789","obj":"T1788"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"CD40 signaling is activated in a T cell-dependent manner, as the ligand for CD40, CD154, is expressed primarily by activated T cells."}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1240","span":{"begin":0,"end":4},"obj":"CD"},{"id":"T1241","span":{"begin":5,"end":14},"obj":"VBG"},{"id":"T1242","span":{"begin":15,"end":17},"obj":"VBZ"},{"id":"T1243","span":{"begin":18,"end":27},"obj":"VBN"},{"id":"T1244","span":{"begin":28,"end":30},"obj":"IN"},{"id":"T1245","span":{"begin":31,"end":32},"obj":"DT"},{"id":"T1246","span":{"begin":33,"end":34},"obj":"NNP"},{"id":"T1247","span":{"begin":35,"end":49},"obj":"NN"},{"id":"T1248","span":{"begin":50,"end":56},"obj":"NN"},{"id":"T1249","span":{"begin":56,"end":57},"obj":","},{"id":"T1250","span":{"begin":58,"end":60},"obj":"IN"},{"id":"T1251","span":{"begin":61,"end":64},"obj":"DT"},{"id":"T1252","span":{"begin":65,"end":71},"obj":"NN"},{"id":"T1253","span":{"begin":72,"end":75},"obj":"IN"},{"id":"T1254","span":{"begin":76,"end":80},"obj":"NNP"},{"id":"T1255","span":{"begin":80,"end":81},"obj":","},{"id":"T1256","span":{"begin":82,"end":87},"obj":"NNP"},{"id":"T1257","span":{"begin":87,"end":88},"obj":","},{"id":"T1258","span":{"begin":89,"end":91},"obj":"VBZ"},{"id":"T1259","span":{"begin":92,"end":101},"obj":"VBN"},{"id":"T1260","span":{"begin":102,"end":111},"obj":"RB"},{"id":"T1261","span":{"begin":112,"end":114},"obj":"IN"},{"id":"T1262","span":{"begin":115,"end":124},"obj":"VBN"},{"id":"T1263","span":{"begin":125,"end":126},"obj":"NNP"},{"id":"T1264","span":{"begin":127,"end":132},"obj":"NNS"},{"id":"T1265","span":{"begin":132,"end":133},"obj":"."}],"relations":[{"id":"R858","pred":"nsubjpass","subj":"T1240","obj":"T1243"},{"id":"R859","pred":"nsubjpass","subj":"T1241","obj":"T1243"},{"id":"R860","pred":"auxpass","subj":"T1242","obj":"T1243"},{"id":"R861","pred":"ROOT","subj":"T1243","obj":"T1243"},{"id":"R862","pred":"prep","subj":"T1244","obj":"T1243"},{"id":"R863","pred":"det","subj":"T1245","obj":"T1248"},{"id":"R864","pred":"compound","subj":"T1246","obj":"T1248"},{"id":"R865","pred":"compound","subj":"T1247","obj":"T1248"},{"id":"R866","pred":"pobj","subj":"T1248","obj":"T1244"},{"id":"R867","pred":"punct","subj":"T1249","obj":"T1243"},{"id":"R868","pred":"prep","subj":"T1250","obj":"T1259"},{"id":"R869","pred":"det","subj":"T1251","obj":"T1252"},{"id":"R870","pred":"pobj","subj":"T1252","obj":"T1250"},{"id":"R871","pred":"prep","subj":"T1253","obj":"T1252"},{"id":"R872","pred":"pobj","subj":"T1254","obj":"T1253"},{"id":"R873","pred":"punct","subj":"T1255","obj":"T1254"},{"id":"R874","pred":"appos","subj":"T1256","obj":"T1254"},{"id":"R875","pred":"punct","subj":"T1257","obj":"T1259"},{"id":"R876","pred":"auxpass","subj":"T1258","obj":"T1259"},{"id":"R877","pred":"advcl","subj":"T1259","obj":"T1243"},{"id":"R878","pred":"advmod","subj":"T1260","obj":"T1261"},{"id":"R879","pred":"agent","subj":"T1261","obj":"T1259"},{"id":"R880","pred":"amod","subj":"T1262","obj":"T1264"},{"id":"R881","pred":"compound","subj":"T1263","obj":"T1264"},{"id":"R882","pred":"pobj","subj":"T1264","obj":"T1261"},{"id":"R883","pred":"punct","subj":"T1265","obj":"T1243"}],"text":"CD40 signaling is activated in a T cell-dependent manner, as the ligand for CD40, CD154, is expressed primarily by activated T cells."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T2313","span":{"begin":5,"end":14},"obj":"http://purl.obolibrary.org/obo/GO_0023052"}],"text":"CD40 signaling is activated in a T cell-dependent manner, as the ligand for CD40, CD154, is expressed primarily by activated T cells."}
GO-MF
{"project":"GO-MF","denotations":[{"id":"T2386","span":{"begin":65,"end":71},"obj":"http://purl.obolibrary.org/obo/GO_0005488"}],"text":"CD40 signaling is activated in a T cell-dependent manner, as the ligand for CD40, CD154, is expressed primarily by activated T cells."}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T2416","span":{"begin":127,"end":132},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"CD40 signaling is activated in a T cell-dependent manner, as the ligand for CD40, CD154, is expressed primarily by activated T cells."}
sentences
{"project":"sentences","denotations":[{"id":"T1183","span":{"begin":0,"end":133},"obj":"Sentence"},{"id":"T18","span":{"begin":0,"end":133},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"CD40 signaling is activated in a T cell-dependent manner, as the ligand for CD40, CD154, is expressed primarily by activated T cells."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T2246","span":{"begin":0,"end":4},"obj":"P25942"},{"id":"T2247","span":{"begin":76,"end":80},"obj":"P25942"},{"id":"T2248","span":{"begin":82,"end":87},"obj":"P29965"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"CD40 signaling is activated in a T cell-dependent manner, as the ligand for CD40, CD154, is expressed primarily by activated T cells."}
test2
{"project":"test2","denotations":[{"id":"T1050","span":{"begin":0,"end":4},"obj":"Protein"},{"id":"T1051","span":{"begin":76,"end":80},"obj":"Protein"},{"id":"T1052","span":{"begin":82,"end":87},"obj":"Protein"},{"id":"T1053","span":{"begin":92,"end":101},"obj":"Gene_expression"}],"relations":[{"id":"R743","pred":"themeOf","subj":"T1051","obj":"T1053"},{"id":"R744","pred":"themeOf","subj":"T1052","obj":"T1053"}],"text":"CD40 signaling is activated in a T cell-dependent manner, as the ligand for CD40, CD154, is expressed primarily by activated T cells."}