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PMC:3148254 / 19384-19605 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T6632 29-33 Protein denotes HOIP
T6633 37-48 Regulation denotes responsible true
T6634 57-68 Binding denotes recruitment
T6635 109-113 Protein denotes CD40
T6636 167-171 Protein denotes HOIP
T6637 172-181 Negative_regulation denotes deficient
T6638 186-190 Protein denotes HOIP
T6639 191-204 Positive_regulation denotes reconstituted
R5050 T6632 T6633 causeOf HOIP,responsible
R5051 T6634 T6633 themeOf recruitment,responsible
R5052 T6635 T6634 themeOf CD40,recruitment
R5053 T6636 T6637 themeOf HOIP,deficient
R5054 T6638 T6639 themeOf HOIP,reconstituted

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T8647 109-113 Protein denotes CD40
T8648 137-141 Protein denotes CD40

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T8727 29-33 Protein denotes HOIP
T8728 37-48 Regulation denotes responsible true
T8729 57-68 Binding denotes recruitment
T8730 109-113 Protein denotes CD40
T8731 167-171 Protein denotes HOIP
T8732 172-181 Negative_regulation denotes deficient
T8733 186-190 Protein denotes HOIP
T8734 191-204 Positive_regulation denotes reconstituted
R6785 T8727 T8728 causeOf HOIP,responsible
R6787 T8729 T8728 themeOf recruitment,responsible
R6788 T8730 T8729 themeOf CD40,recruitment
R6789 T8731 T8732 themeOf HOIP,deficient
R6791 T8733 T8734 themeOf HOIP,reconstituted

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7745 0-2 TO denotes To
T7746 3-7 VB denotes test
T7747 8-11 DT denotes the
T7748 12-23 NN denotes possibility
T7749 24-28 IN denotes that
T7750 29-33 NN denotes HOIP
T7751 34-36 VB denotes is
T7752 37-48 JJ denotes responsible
T7753 49-52 IN denotes for
T7754 53-56 DT denotes the
T7755 57-68 NN denotes recruitment
T7756 69-71 IN denotes of
T7757 72-77 JJ denotes other
T7758 78-86 JJ denotes critical
T7759 87-96 NN denotes signaling
T7760 97-105 NN denotes proteins
T7761 106-108 TO denotes to
T7762 109-113 NN denotes CD40
T7763 113-114 -COMMA- denotes ,
T7764 115-117 PRP denotes we
T7765 118-136 VB denotes immunoprecipitated
T7766 137-141 NN denotes CD40
T7767 142-151 NN denotes signaling
T7768 152-161 NN denotes complexes
T7769 162-166 IN denotes from
T7770 167-181 JJ denotes HOIP-deficient
T7771 182-185 CC denotes and
T7772 186-204 JJ denotes HOIP-reconstituted
T7773 205-210 NN denotes cells
T7774 211-212 -LRB- denotes (
T7775 212-216 NN denotes Fig.
T7776 217-219 NN denotes 5B
T7777 219-220 -RRB- denotes )
R6098 T7746 T7745 arg1Of test,To
R6099 T7748 T7746 arg2Of possibility,test
R6100 T7748 T7747 arg1Of possibility,the
R6101 T7750 T7751 arg1Of HOIP,is
R6102 T7750 T7752 arg1Of HOIP,responsible
R6103 T7751 T7748 arg2Of is,possibility
R6104 T7751 T7749 arg1Of is,that
R6105 T7752 T7751 arg2Of responsible,is
R6106 T7752 T7753 arg1Of responsible,for
R6107 T7755 T7753 arg2Of recruitment,for
R6108 T7755 T7754 arg1Of recruitment,the
R6109 T7755 T7756 arg1Of recruitment,of
R6110 T7755 T7761 arg1Of recruitment,to
R6111 T7760 T7756 arg2Of proteins,of
R6112 T7760 T7757 arg1Of proteins,other
R6113 T7760 T7758 arg1Of proteins,critical
R6114 T7760 T7759 arg1Of proteins,signaling
R6115 T7762 T7761 arg2Of CD40,to
R6116 T7764 T7746 arg1Of we,test
R6117 T7764 T7765 arg1Of we,immunoprecipitated
R6118 T7765 T7745 modOf immunoprecipitated,To
R6119 T7765 T7763 arg1Of immunoprecipitated,","
R6120 T7768 T7765 arg2Of complexes,immunoprecipitated
R6121 T7768 T7766 arg1Of complexes,CD40
R6122 T7768 T7767 arg1Of complexes,signaling
R6123 T7768 T7769 arg1Of complexes,from
R6124 T7770 T7771 arg1Of HOIP-deficient,and
R6125 T7772 T7771 arg2Of HOIP-reconstituted,and
R6126 T7773 T7769 arg2Of cells,from
R6127 T7773 T7770 arg1Of cells,HOIP-deficient
R6128 T7773 T7772 arg1Of cells,HOIP-reconstituted
R6129 T7773 T7774 arg1Of cells,(
R6130 T7776 T7774 arg2Of 5B,(
R6131 T7776 T7775 arg1Of 5B,Fig.
R6132 T7777 T7774 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7011 0-2 TO denotes To
T7012 3-7 VB denotes test
T7013 8-11 DT denotes the
T7014 12-23 NN denotes possibility
T7015 24-28 WDT denotes that
T7016 29-33 NNP denotes HOIP
T7017 34-36 VBZ denotes is
T7018 37-48 JJ denotes responsible
T7019 49-52 IN denotes for
T7020 53-56 DT denotes the
T7021 57-68 NN denotes recruitment
T7022 69-71 IN denotes of
T7023 72-77 JJ denotes other
T7024 78-86 JJ denotes critical
T7025 87-96 VBG denotes signaling
T7026 97-105 NNS denotes proteins
T7027 106-108 TO denotes to
T7028 109-113 NNP denotes CD40
T7029 113-114 , denotes ,
T7030 115-117 PRP denotes we
T7031 118-136 VBD denotes immunoprecipitated
T7032 137-141 NNP denotes CD40
T7033 142-151 VBG denotes signaling
T7034 152-161 NNS denotes complexes
T7035 162-166 IN denotes from
T7036 167-181 JJ denotes HOIP-deficient
T7037 182-185 CC denotes and
T7038 186-204 JJ denotes HOIP-reconstituted
T7039 205-210 NNS denotes cells
T7040 211-212 -LRB- denotes (
T7041 212-216 NNP denotes Fig.
T7042 217-219 NNP denotes 5B
T7043 219-220 -RRB- denotes )
T7044 220-221 . denotes .
R5369 T7011 T7012 aux To,test
R5370 T7012 T7031 advcl test,immunoprecipitated
R5371 T7013 T7014 det the,possibility
R5372 T7014 T7012 dobj possibility,test
R5373 T7015 T7017 mark that,is
R5374 T7016 T7017 nsubj HOIP,is
R5375 T7017 T7014 acl is,possibility
R5376 T7018 T7017 acomp responsible,is
R5377 T7019 T7018 prep for,responsible
R5378 T7020 T7021 det the,recruitment
R5379 T7021 T7019 pobj recruitment,for
R5380 T7022 T7021 prep of,recruitment
R5381 T7023 T7026 amod other,proteins
R5382 T7024 T7026 amod critical,proteins
R5383 T7025 T7026 amod signaling,proteins
R5384 T7026 T7022 pobj proteins,of
R5385 T7027 T7021 prep to,recruitment
R5386 T7028 T7027 pobj CD40,to
R5387 T7029 T7031 punct ",",immunoprecipitated
R5388 T7030 T7031 nsubj we,immunoprecipitated
R5389 T7031 T7031 ROOT immunoprecipitated,immunoprecipitated
R5390 T7032 T7031 dobj CD40,immunoprecipitated
R5391 T7033 T7031 advcl signaling,immunoprecipitated
R5392 T7034 T7033 dobj complexes,signaling
R5393 T7035 T7034 prep from,complexes
R5394 T7036 T7039 amod HOIP-deficient,cells
R5395 T7037 T7036 cc and,HOIP-deficient
R5396 T7038 T7036 conj HOIP-reconstituted,HOIP-deficient
R5397 T7039 T7035 pobj cells,from
R5398 T7040 T7034 punct (,complexes
R5399 T7041 T7042 compound Fig.,5B
R5400 T7042 T7034 appos 5B,complexes
R5401 T7043 T7034 punct ),complexes
R5402 T7044 T7031 punct .,immunoprecipitated

GO-BP

Id Subject Object Predicate Lexical cue
T8286 87-96 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T8287 142-151 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

sentences

Id Subject Object Predicate Lexical cue
T6715 0-221 Sentence denotes To test the possibility that HOIP is responsible for the recruitment of other critical signaling proteins to CD40, we immunoprecipitated CD40 signaling complexes from HOIP-deficient and HOIP-reconstituted cells (Fig. 5B).
T134 0-221 Sentence denotes To test the possibility that HOIP is responsible for the recruitment of other critical signaling proteins to CD40, we immunoprecipitated CD40 signaling complexes from HOIP-deficient and HOIP-reconstituted cells (Fig. 5B).

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8219 29-33 Q96EP0 denotes HOIP
T8220 109-113 P25942 denotes CD40
T8221 137-141 P25942 denotes CD40
T8222 167-171 Q96EP0 denotes HOIP
T8223 186-190 Q96EP0 denotes HOIP

test2

Id Subject Object Predicate Lexical cue
T6499 29-33 Protein denotes HOIP
T6500 37-48 Positive_regulation denotes responsible
T6501 57-68 Binding denotes recruitment
T6502 109-113 Protein denotes CD40
T6503 167-171 Protein denotes HOIP
T6504 172-181 Negative_regulation denotes deficient
T6505 186-190 Protein denotes HOIP
T6506 191-204 Positive_regulation denotes reconstituted
R4966 T6499 T6500 causeOf HOIP,responsible
R4967 T6501 T6500 themeOf recruitment,responsible
R4968 T6502 T6501 themeOf CD40,recruitment
R4969 T6503 T6504 themeOf HOIP,deficient
R4970 T6505 T6506 themeOf HOIP,reconstituted