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PMC:3148254 / 10858-11098 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T4222 21-25 Protein denotes HOIP
T4223 138-142 Protein denotes CD40
T4224 162-166 Protein denotes IL-4
T4225 182-192 Transcription denotes production true
T4226 196-212 Protein denotes germline epsilon
T4227 214-217 Protein denotes GLε
R3240 T4226 T4225 themeOf germline epsilon,production
R3241 T4227 T4226 equivalentTo GLε,germline epsilon

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T5307 138-142 Protein denotes CD40
T5308 162-166 Protein denotes IL-4

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T5365 21-25 Protein denotes HOIP
T5366 138-142 Protein denotes CD40
T5367 162-166 Protein denotes IL-4
T5368 182-192 Transcription denotes production true
T5369 196-212 Protein denotes germline epsilon
T5370 214-217 Protein denotes GLε
R4142 T5369 T5368 themeOf germline epsilon,production
R4143 T5370 T5369 equivalentTo GLε,germline epsilon

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4881 0-2 TO denotes To
T4882 3-12 VB denotes determine
T4883 13-20 IN denotes whether
T4884 21-25 NN denotes HOIP
T4885 26-28 VB denotes is
T4886 29-37 VB denotes required
T4887 38-40 IN denotes in
T4888 41-44 DT denotes the
T4889 45-55 NN denotes initiation
T4890 56-58 IN denotes of
T4891 59-62 DT denotes the
T4892 63-68 NN denotes class
T4893 69-78 NN denotes switching
T4894 79-86 NN denotes process
T4895 86-87 -COMMA- denotes ,
T4896 88-91 DT denotes the
T4897 92-100 JJ denotes relevant
T4898 101-102 NN denotes B
T4899 103-107 NN denotes cell
T4900 108-113 NN denotes lines
T4901 114-118 VB denotes were
T4902 119-129 VB denotes stimulated
T4903 130-137 IN denotes through
T4904 138-142 NN denotes CD40
T4905 143-145 IN denotes in
T4906 146-149 DT denotes the
T4907 150-158 NN denotes presence
T4908 159-161 IN denotes of
T4909 162-166 NN denotes IL-4
T4910 167-170 CC denotes and
T4911 171-177 VB denotes tested
T4912 178-181 IN denotes for
T4913 182-192 NN denotes production
T4914 193-195 IN denotes of
T4915 196-204 NN denotes germline
T4916 205-212 NN denotes epsilon
T4917 213-214 -LRB- denotes (
T4918 214-217 NN denotes GLε
T4919 217-218 -RRB- denotes )
T4920 219-230 NN denotes transcripts
T4921 231-232 -LRB- denotes (
T4922 232-236 NN denotes Fig.
T4923 237-238 CD denotes 3
T4924 238-239 -RRB- denotes )
R3877 T4882 T4881 arg1Of determine,To
R3878 T4884 T4885 arg1Of HOIP,is
R3879 T4884 T4886 arg2Of HOIP,required
R3880 T4886 T4882 arg2Of required,determine
R3881 T4886 T4883 arg1Of required,whether
R3882 T4886 T4885 arg2Of required,is
R3883 T4886 T4887 arg1Of required,in
R3884 T4889 T4887 arg2Of initiation,in
R3885 T4889 T4888 arg1Of initiation,the
R3886 T4889 T4890 arg1Of initiation,of
R3887 T4894 T4890 arg2Of process,of
R3888 T4894 T4891 arg1Of process,the
R3889 T4894 T4892 arg1Of process,class
R3890 T4894 T4893 arg1Of process,switching
R3891 T4900 T4896 arg1Of lines,the
R3892 T4900 T4897 arg1Of lines,relevant
R3893 T4900 T4898 arg1Of lines,B
R3894 T4900 T4899 arg1Of lines,cell
R3895 T4900 T4901 arg1Of lines,were
R3896 T4900 T4902 arg2Of lines,stimulated
R3897 T4900 T4911 arg2Of lines,tested
R3898 T4902 T4903 arg1Of stimulated,through
R3899 T4902 T4905 arg1Of stimulated,in
R3900 T4902 T4910 arg1Of stimulated,and
R3901 T4904 T4903 arg2Of CD40,through
R3902 T4907 T4905 arg2Of presence,in
R3903 T4907 T4906 arg1Of presence,the
R3904 T4907 T4908 arg1Of presence,of
R3905 T4909 T4908 arg2Of IL-4,of
R3906 T4910 T4881 modOf and,To
R3907 T4910 T4895 arg1Of and,","
R3908 T4910 T4901 arg2Of and,were
R3909 T4911 T4910 arg2Of tested,and
R3910 T4911 T4912 arg1Of tested,for
R3911 T4913 T4912 arg2Of production,for
R3912 T4913 T4914 arg1Of production,of
R3913 T4916 T4915 arg1Of epsilon,germline
R3914 T4916 T4917 arg1Of epsilon,(
R3915 T4918 T4917 arg2Of GLε,(
R3916 T4919 T4917 arg3Of ),(
R3917 T4920 T4914 arg2Of transcripts,of
R3918 T4920 T4916 arg1Of transcripts,epsilon
R3919 T4920 T4921 arg1Of transcripts,(
R3920 T4922 T4921 arg2Of Fig.,(
R3921 T4922 T4923 arg1Of Fig.,3
R3922 T4924 T4921 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4511 0-2 TO denotes To
T4512 3-12 VB denotes determine
T4513 13-20 IN denotes whether
T4514 21-25 NNP denotes HOIP
T4515 26-28 VBZ denotes is
T4516 29-37 VBN denotes required
T4517 38-40 IN denotes in
T4518 41-44 DT denotes the
T4519 45-55 NN denotes initiation
T4520 56-58 IN denotes of
T4521 59-62 DT denotes the
T4522 63-68 NN denotes class
T4523 69-78 VBG denotes switching
T4524 79-86 NN denotes process
T4525 86-87 , denotes ,
T4526 88-91 DT denotes the
T4527 92-100 JJ denotes relevant
T4528 101-102 NNP denotes B
T4529 103-107 NN denotes cell
T4530 108-113 NNS denotes lines
T4531 114-118 VBD denotes were
T4532 119-129 VBN denotes stimulated
T4533 130-137 IN denotes through
T4534 138-142 NNP denotes CD40
T4535 143-145 IN denotes in
T4536 146-149 DT denotes the
T4537 150-158 NN denotes presence
T4538 159-161 IN denotes of
T4539 162-166 NN denotes IL-4
T4540 167-170 CC denotes and
T4541 171-177 VBN denotes tested
T4542 178-181 IN denotes for
T4543 182-192 NN denotes production
T4544 193-195 IN denotes of
T4545 196-204 NN denotes germline
T4546 205-212 NN denotes epsilon
T4547 213-214 -LRB- denotes (
T4548 214-217 NNP denotes GLε
T4549 217-218 -RRB- denotes )
T4550 219-230 NNS denotes transcripts
T4551 231-232 -LRB- denotes (
T4552 232-236 JJ denotes Fig.
T4553 237-238 CD denotes 3
T4554 238-239 -RRB- denotes )
T4555 239-240 . denotes .
R3501 T4511 T4512 aux To,determine
R3502 T4512 T4532 advcl determine,stimulated
R3503 T4513 T4516 mark whether,required
R3504 T4514 T4516 nsubjpass HOIP,required
R3505 T4515 T4516 auxpass is,required
R3506 T4516 T4512 ccomp required,determine
R3507 T4517 T4516 prep in,required
R3508 T4518 T4519 det the,initiation
R3509 T4519 T4517 pobj initiation,in
R3510 T4520 T4519 prep of,initiation
R3511 T4521 T4524 det the,process
R3512 T4522 T4524 compound class,process
R3513 T4523 T4524 compound switching,process
R3514 T4524 T4520 pobj process,of
R3515 T4525 T4532 punct ",",stimulated
R3516 T4526 T4530 det the,lines
R3517 T4527 T4530 amod relevant,lines
R3518 T4528 T4529 compound B,cell
R3519 T4529 T4530 compound cell,lines
R3520 T4530 T4532 nsubjpass lines,stimulated
R3521 T4531 T4532 auxpass were,stimulated
R3522 T4532 T4532 ROOT stimulated,stimulated
R3523 T4533 T4532 prep through,stimulated
R3524 T4534 T4533 pobj CD40,through
R3525 T4535 T4532 prep in,stimulated
R3526 T4536 T4537 det the,presence
R3527 T4537 T4535 pobj presence,in
R3528 T4538 T4537 prep of,presence
R3529 T4539 T4538 pobj IL-4,of
R3530 T4540 T4532 cc and,stimulated
R3531 T4541 T4532 conj tested,stimulated
R3532 T4542 T4541 prep for,tested
R3533 T4543 T4542 pobj production,for
R3534 T4544 T4543 prep of,production
R3535 T4545 T4546 compound germline,epsilon
R3536 T4546 T4544 pobj epsilon,of
R3537 T4547 T4548 punct (,GLε
R3538 T4548 T4546 appos GLε,epsilon
R3539 T4549 T4546 punct ),epsilon
R3540 T4550 T4542 pobj transcripts,for
R3541 T4551 T4552 punct (,Fig.
R3542 T4552 T4550 appos Fig.,transcripts
R3543 T4553 T4552 nummod 3,Fig.
R3544 T4554 T4552 punct ),Fig.
R3545 T4555 T4532 punct .,stimulated

GO-MF

Id Subject Object Predicate Lexical cue
T5093 162-166 http://purl.obolibrary.org/obo/GO_0005136 denotes IL-4

sentences

Id Subject Object Predicate Lexical cue
T4254 0-240 Sentence denotes To determine whether HOIP is required in the initiation of the class switching process, the relevant B cell lines were stimulated through CD40 in the presence of IL-4 and tested for production of germline epsilon (GLε) transcripts (Fig. 3).
T75 0-240 Sentence denotes To determine whether HOIP is required in the initiation of the class switching process, the relevant B cell lines were stimulated through CD40 in the presence of IL-4 and tested for production of germline epsilon (GLε) transcripts (Fig. 3).

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5035 21-25 Q96EP0 denotes HOIP
T5036 138-142 P25942 denotes CD40
T5037 162-166 P05112 denotes IL-4
T5038 196-212 Q28322 denotes germline epsilon
T5039 214-217 Q28322 denotes GLε

test2

Id Subject Object Predicate Lexical cue
T4151 21-25 Protein denotes HOIP
T4152 138-142 Protein denotes CD40
T4153 162-166 Protein denotes IL-4
T4154 182-192 Gene_expression denotes production
T4155 196-212 Protein denotes germline epsilon
T4156 214-217 Protein denotes GLε
R3196 T4155 T4154 themeOf germline epsilon,production
R3197 T4156 T4155 equivalentTo GLε,germline epsilon