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PMC:3062687 / 439-630 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T245 120-125 P23396 denotes NleH1
T246 149-153 P23396 denotes RPS3
T247 187-191 P23396 denotes RPS3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T168 9-11 IN denotes in
T169 12-20 NN denotes response
T170 21-23 TO denotes to
T171 24-34 VB denotes activating
T172 35-42 NN denotes stimuli
T173 44-52 RB denotes Moreover
T174 52-53 -COMMA- denotes ,
T175 54-57 DT denotes the
T176 58-67 JJ denotes foodborne
T177 68-76 NN denotes pathogen
T178 77-88 FW denotes Escherichia
T179 89-93 FW denotes coli
T180 94-98 NN denotes O157
T181 98-99 -COLON- denotes :
T182 99-101 NN denotes H7
T183 102-111 NN denotes virulence
T184 112-119 NN denotes protein
T185 120-125 NN denotes NleH1
T186 126-138 RB denotes specifically
T187 139-148 VB denotes inhibited
T188 149-153 NN denotes RPS3
T189 154-158 NN denotes S209
T190 159-174 NN denotes phosphorylation
T191 175-178 CC denotes and
T192 179-186 VB denotes blocked
T193 187-191 NN denotes RPS3
R146 T168 T170 arg1Of in,to
R147 T169 T168 arg2Of response,in
R148 T172 T168 arg3Of stimuli,in
R149 T172 T171 arg1Of stimuli,activating
R150 T180 T176 arg1Of O157,foodborne
R151 T180 T177 arg1Of O157,pathogen
R152 T180 T178 arg1Of O157,Escherichia
R153 T180 T179 arg1Of O157,coli
R154 T180 T181 arg1Of O157,:
R155 T181 T175 arg1Of :,the
R156 T181 T187 arg1Of :,inhibited
R157 T181 T192 arg1Of :,blocked
R160 T185 T181 arg2Of NleH1,:
R161 T185 T182 arg1Of NleH1,H7
R162 T185 T183 arg1Of NleH1,virulence
R163 T185 T184 arg1Of NleH1,protein
R164 T187 T191 arg1Of inhibited,and
R165 T190 T187 arg2Of phosphorylation,inhibited
R166 T190 T188 arg1Of phosphorylation,RPS3
R167 T190 T189 arg1Of phosphorylation,S209
R168 T191 T173 arg1Of and,Moreover
R169 T191 T174 arg1Of and,","
R170 T191 T186 arg1Of and,specifically
R174 T192 T191 arg2Of blocked,and

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T320 9-11 IN denotes in
T321 12-20 NN denotes response
T322 21-23 TO denotes to
T323 24-34 VBG denotes activating
T324 35-42 NNS denotes stimuli
T325 42-43 . denotes .
T326 44-52 RB denotes Moreover
T327 52-53 , denotes ,
T328 54-57 DT denotes the
T329 58-67 NN denotes foodborne
T330 68-76 NN denotes pathogen
T331 77-88 NNP denotes Escherichia
T332 89-93 NNS denotes coli
T333 94-98 NNP denotes O157
T334 98-99 : denotes :
T335 99-101 NNP denotes H7
T336 102-111 NN denotes virulence
T337 112-119 NN denotes protein
T338 120-125 NNP denotes NleH1
T339 126-138 RB denotes specifically
T340 139-148 VBD denotes inhibited
T341 149-153 NNP denotes RPS3
T342 154-158 NNP denotes S209
T343 159-174 NN denotes phosphorylation
T344 175-178 CC denotes and
T345 179-186 VBD denotes blocked
T346 187-191 CD denotes RPS3
R255 T321 T320 pobj response,in
R256 T322 T321 prep to,response
R257 T323 T322 pcomp activating,to
R258 T324 T323 dobj stimuli,activating
R260 T326 T340 advmod Moreover,inhibited
R261 T327 T340 punct ",",inhibited
R262 T328 T330 det the,pathogen
R263 T329 T330 compound foodborne,pathogen
R264 T330 T340 nsubj pathogen,inhibited
R265 T331 T332 compound Escherichia,coli
R266 T332 T333 compound coli,O157
R267 T333 T330 appos O157,pathogen
R268 T334 T333 punct :,O157
R269 T335 T337 compound H7,protein
R270 T336 T337 compound virulence,protein
R271 T337 T330 conj protein,pathogen
R272 T338 T340 nsubj NleH1,inhibited
R273 T339 T340 advmod specifically,inhibited
R274 T340 T340 ROOT inhibited,inhibited
R275 T341 T343 compound RPS3,phosphorylation
R276 T342 T343 compound S209,phosphorylation
R277 T343 T340 dobj phosphorylation,inhibited
R278 T344 T340 cc and,inhibited
R279 T345 T340 conj blocked,inhibited

GO-BP

Id Subject Object Predicate Lexical cue
T434 159-174 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T438 102-111 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence
T439 102-111 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence

events-check-again

Id Subject Object Predicate Lexical cue
T581 9-23 Positive_regulation denotes in response to
T582 24-34 Positive_regulation denotes activating
T583 120-125 Protein denotes NleH1
T584 139-148 Negative_regulation denotes inhibited
T585 149-153 Protein denotes RPS3
T586 154-158 Entity denotes S209
T587 159-174 Phosphorylation denotes phosphorylation
T588 179-186 Negative_regulation denotes blocked
T589 187-191 Protein denotes RPS3
R456 T582 T581 causeOf activating,in response to
R457 T583 T584 causeOf NleH1,inhibited
R458 T584 T588 causeOf inhibited,blocked
R459 T586 T587 themeOf S209,phosphorylation
R460 T586 T585 partOf S209,RPS3
R461 T587 T584 themeOf phosphorylation,inhibited
R462 T589 T588 themeOf RPS3,blocked

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T520 120-125 Protein denotes NleH1
T521 149-158 Protein denotes RPS3 S209
T522 187-191 Protein denotes RPS3
T523 159-174 Phosphorylation denotes phosphorylation
T524 179-186 Negative_regulation denotes blocked
T525 139-148 Negative_regulation denotes inhibited
R408 T521 T523 themeOf RPS3 S209,phosphorylation
R409 T522 T524 themeOf RPS3,blocked
R410 T523 T525 themeOf phosphorylation,inhibited

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T81 9-23 Positive_regulation denotes in response to
T82 24-34 Positive_regulation denotes activating
T83 120-125 Protein denotes NleH1
T84 139-148 Negative_regulation denotes inhibited
T85 149-153 Protein denotes RPS3
T86 154-158 Entity denotes S209
T87 159-174 Phosphorylation denotes phosphorylation
T88 179-186 Negative_regulation denotes blocked
T89 187-191 Protein denotes RPS3
R68 T82 T81 causeOf activating,in response to
R69 T83 T84 causeOf NleH1,inhibited
R70 T84 T88 causeOf inhibited,blocked
R71 T86 T87 themeOf S209,phosphorylation
R72 T86 T85 partOf S209,RPS3
R73 T87 T84 themeOf phosphorylation,inhibited
R74 T89 T88 themeOf RPS3,blocked

test2

Id Subject Object Predicate Lexical cue
T52 9-23 Positive_regulation denotes in response to
T53 120-125 Protein denotes NleH1
T54 139-148 Negative_regulation denotes inhibited
T55 149-153 Protein denotes RPS3
T56 154-158 Entity denotes S209
T57 159-174 Phosphorylation denotes phosphorylation
T58 179-186 Negative_regulation denotes blocked
T59 187-191 Protein denotes RPS3
R45 T53 T54 causeOf NleH1,inhibited
R46 T54 T58 causeOf inhibited,blocked
R47 T56 T55 partOf S209,RPS3
R48 T56 T57 themeOf S209,phosphorylation
R49 T57 T54 themeOf phosphorylation,inhibited
R50 T59 T58 themeOf RPS3,blocked