PMC:3062687 / 2930-3165
Annnotations
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T1160","span":{"begin":88,"end":92},"obj":"P23396"},{"id":"T2157","span":{"begin":196,"end":200},"obj":"P23396"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"r nuclear translocation. Furthermore, the E. coli NleH1 effector specifically inhibited RPS3 S209 revealing how E. coli O157:H7 inhibits this important innate immune response mechanism.\n\nResults\n\nRPS3 phosphorylation in response to NF-"}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T1109","span":{"begin":2,"end":9},"obj":"JJ"},{"id":"T1110","span":{"begin":10,"end":23},"obj":"NN"},{"id":"T1111","span":{"begin":25,"end":36},"obj":"RB"},{"id":"T1112","span":{"begin":36,"end":37},"obj":"-COMMA-"},{"id":"T1113","span":{"begin":38,"end":44},"obj":"NN"},{"id":"T1114","span":{"begin":45,"end":55},"obj":"NN"},{"id":"T1115","span":{"begin":56,"end":64},"obj":"NN"},{"id":"T1116","span":{"begin":65,"end":77},"obj":"RB"},{"id":"T1117","span":{"begin":78,"end":87},"obj":"VB"},{"id":"T1118","span":{"begin":88,"end":92},"obj":"NN"},{"id":"T1119","span":{"begin":93,"end":97},"obj":"NN"},{"id":"T1120","span":{"begin":98,"end":107},"obj":"VB"},{"id":"T1121","span":{"begin":108,"end":114},"obj":"NN"},{"id":"T1122","span":{"begin":115,"end":124},"obj":"NN"},{"id":"T1123","span":{"begin":124,"end":125},"obj":"-COLON-"},{"id":"T1124","span":{"begin":125,"end":127},"obj":"NN"},{"id":"T1125","span":{"begin":128,"end":136},"obj":"VB"},{"id":"T1126","span":{"begin":137,"end":141},"obj":"DT"},{"id":"T1127","span":{"begin":142,"end":151},"obj":"JJ"},{"id":"T1128","span":{"begin":152,"end":158},"obj":"JJ"},{"id":"T1129","span":{"begin":159,"end":165},"obj":"JJ"},{"id":"T1130","span":{"begin":166,"end":174},"obj":"NN"},{"id":"T1131","span":{"begin":175,"end":184},"obj":"NN"},{"id":"T2017","span":{"begin":196,"end":200},"obj":"NN"},{"id":"T2018","span":{"begin":201,"end":216},"obj":"NN"},{"id":"T2019","span":{"begin":217,"end":219},"obj":"IN"},{"id":"T2020","span":{"begin":220,"end":228},"obj":"NN"},{"id":"T2021","span":{"begin":229,"end":231},"obj":"TO"}],"relations":[{"id":"R942","pred":"arg1Of","subj":"T1110","obj":"T1109"},{"id":"R943","pred":"arg1Of","subj":"T1115","obj":"T1113"},{"id":"R944","pred":"arg1Of","subj":"T1115","obj":"T1114"},{"id":"R945","pred":"arg1Of","subj":"T1115","obj":"T1117"},{"id":"R946","pred":"arg1Of","subj":"T1117","obj":"T1111"},{"id":"R947","pred":"arg1Of","subj":"T1117","obj":"T1112"},{"id":"R948","pred":"arg1Of","subj":"T1117","obj":"T1116"},{"id":"R949","pred":"arg2Of","subj":"T1119","obj":"T1117"},{"id":"R950","pred":"arg1Of","subj":"T1119","obj":"T1118"},{"id":"R951","pred":"arg1Of","subj":"T1119","obj":"T1120"},{"id":"R952","pred":"arg2Of","subj":"T1122","obj":"T1120"},{"id":"R953","pred":"arg1Of","subj":"T1122","obj":"T1121"},{"id":"R954","pred":"arg1Of","subj":"T1122","obj":"T1123"},{"id":"R955","pred":"arg1Of","subj":"T1124","obj":"T1125"},{"id":"R956","pred":"arg2Of","subj":"T1125","obj":"T1123"},{"id":"R957","pred":"arg2Of","subj":"T1131","obj":"T1125"},{"id":"R958","pred":"arg1Of","subj":"T1131","obj":"T1126"},{"id":"R959","pred":"arg1Of","subj":"T1131","obj":"T1127"},{"id":"R960","pred":"arg1Of","subj":"T1131","obj":"T1128"},{"id":"R961","pred":"arg1Of","subj":"T1131","obj":"T1129"},{"id":"R962","pred":"arg1Of","subj":"T1131","obj":"T1130"},{"id":"R1587","pred":"arg1Of","subj":"T2018","obj":"T2017"},{"id":"R1588","pred":"arg1Of","subj":"T2018","obj":"T2019"},{"id":"R1589","pred":"arg1Of","subj":"T2019","obj":"T2021"},{"id":"R1590","pred":"arg2Of","subj":"T2020","obj":"T2019"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"r nuclear translocation. Furthermore, the E. coli NleH1 effector specifically inhibited RPS3 S209 revealing how E. coli O157:H7 inhibits this important innate immune response mechanism.\n\nResults\n\nRPS3 phosphorylation in response to NF-"}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1492","span":{"begin":2,"end":9},"obj":"JJ"},{"id":"T1493","span":{"begin":10,"end":23},"obj":"NN"},{"id":"T1494","span":{"begin":23,"end":24},"obj":"."},{"id":"T1495","span":{"begin":25,"end":36},"obj":"RB"},{"id":"T1496","span":{"begin":36,"end":37},"obj":","},{"id":"T1497","span":{"begin":38,"end":43},"obj":"NNP"},{"id":"T1498","span":{"begin":43,"end":44},"obj":"."},{"id":"T1499","span":{"begin":45,"end":55},"obj":"CD"},{"id":"T1500","span":{"begin":56,"end":64},"obj":"NN"},{"id":"T1501","span":{"begin":65,"end":77},"obj":"RB"},{"id":"T1502","span":{"begin":78,"end":87},"obj":"VBD"},{"id":"T1503","span":{"begin":88,"end":92},"obj":"NNP"},{"id":"T1504","span":{"begin":93,"end":97},"obj":"NNP"},{"id":"T1505","span":{"begin":98,"end":107},"obj":"VBG"},{"id":"T1506","span":{"begin":108,"end":113},"obj":"NNP"},{"id":"T1507","span":{"begin":113,"end":114},"obj":"."},{"id":"T1508","span":{"begin":115,"end":124},"obj":"NNP"},{"id":"T1509","span":{"begin":124,"end":125},"obj":":"},{"id":"T1510","span":{"begin":125,"end":127},"obj":"NNP"},{"id":"T1511","span":{"begin":128,"end":136},"obj":"VBZ"},{"id":"T1512","span":{"begin":137,"end":141},"obj":"DT"},{"id":"T1513","span":{"begin":142,"end":151},"obj":"JJ"},{"id":"T1514","span":{"begin":152,"end":158},"obj":"NN"},{"id":"T1515","span":{"begin":159,"end":165},"obj":"JJ"},{"id":"T1516","span":{"begin":166,"end":174},"obj":"NN"},{"id":"T1517","span":{"begin":175,"end":184},"obj":"NN"},{"id":"T1518","span":{"begin":184,"end":185},"obj":"."},{"id":"T2170","span":{"begin":196,"end":200},"obj":"CD"},{"id":"T2171","span":{"begin":201,"end":216},"obj":"NN"},{"id":"T2172","span":{"begin":217,"end":219},"obj":"IN"},{"id":"T2173","span":{"begin":220,"end":228},"obj":"NN"},{"id":"T2174","span":{"begin":229,"end":231},"obj":"TO"}],"relations":[{"id":"R1294","pred":"amod","subj":"T1492","obj":"T1493"},{"id":"R1297","pred":"advmod","subj":"T1495","obj":"T1497"},{"id":"R1298","pred":"punct","subj":"T1496","obj":"T1497"},{"id":"R1299","pred":"ROOT","subj":"T1497","obj":"T1497"},{"id":"R1300","pred":"punct","subj":"T1498","obj":"T1497"},{"id":"R1301","pred":"nummod","subj":"T1499","obj":"T1500"},{"id":"R1302","pred":"nsubj","subj":"T1500","obj":"T1502"},{"id":"R1303","pred":"advmod","subj":"T1501","obj":"T1502"},{"id":"R1304","pred":"ROOT","subj":"T1502","obj":"T1502"},{"id":"R1305","pred":"compound","subj":"T1503","obj":"T1504"},{"id":"R1306","pred":"dobj","subj":"T1504","obj":"T1502"},{"id":"R1307","pred":"advcl","subj":"T1505","obj":"T1502"},{"id":"R1308","pred":"dobj","subj":"T1506","obj":"T1505"},{"id":"R1309","pred":"punct","subj":"T1507","obj":"T1502"},{"id":"R1310","pred":"ROOT","subj":"T1508","obj":"T1508"},{"id":"R1311","pred":"punct","subj":"T1509","obj":"T1508"},{"id":"R1312","pred":"nsubj","subj":"T1510","obj":"T1511"},{"id":"R1313","pred":"ROOT","subj":"T1511","obj":"T1511"},{"id":"R1314","pred":"det","subj":"T1512","obj":"T1517"},{"id":"R1315","pred":"amod","subj":"T1513","obj":"T1517"},{"id":"R1316","pred":"amod","subj":"T1514","obj":"T1517"},{"id":"R1317","pred":"amod","subj":"T1515","obj":"T1516"},{"id":"R1318","pred":"compound","subj":"T1516","obj":"T1517"},{"id":"R1319","pred":"dobj","subj":"T1517","obj":"T1511"},{"id":"R1320","pred":"punct","subj":"T1518","obj":"T1511"},{"id":"R1727","pred":"nummod","subj":"T2170","obj":"T2171"},{"id":"R1729","pred":"prep","subj":"T2172","obj":"T2171"},{"id":"R1730","pred":"pobj","subj":"T2173","obj":"T2172"},{"id":"R1731","pred":"prep","subj":"T2174","obj":"T2173"}],"text":"r nuclear translocation. Furthermore, the E. coli NleH1 effector specifically inhibited RPS3 S209 revealing how E. coli O157:H7 inhibits this important innate immune response mechanism.\n\nResults\n\nRPS3 phosphorylation in response to NF-"}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T1597","span":{"begin":152,"end":174},"obj":"http://purl.obolibrary.org/obo/GO_0045087"},{"id":"T1598","span":{"begin":152,"end":174},"obj":"http://purl.obolibrary.org/obo/GO_0002227"},{"id":"T1599","span":{"begin":152,"end":174},"obj":"http://purl.obolibrary.org/obo/GO_0045088"},{"id":"T1600","span":{"begin":152,"end":174},"obj":"http://purl.obolibrary.org/obo/GO_0002218"},{"id":"T1601","span":{"begin":152,"end":174},"obj":"http://purl.obolibrary.org/obo/GO_0045089"},{"id":"T1602","span":{"begin":152,"end":174},"obj":"http://purl.obolibrary.org/obo/GO_0045824"},{"id":"T1603","span":{"begin":159,"end":174},"obj":"http://purl.obolibrary.org/obo/GO_0006955"},{"id":"T2351","span":{"begin":201,"end":216},"obj":"http://purl.obolibrary.org/obo/GO_0016310"}],"text":"r nuclear translocation. Furthermore, the E. coli NleH1 effector specifically inhibited RPS3 S209 revealing how E. coli O157:H7 inhibits this important innate immune response mechanism.\n\nResults\n\nRPS3 phosphorylation in response to NF-"}
sentences
{"project":"sentences","denotations":[{"id":"T792","span":{"begin":25,"end":185},"obj":"Sentence"},{"id":"T23","span":{"begin":25,"end":185},"obj":"Sentence"},{"id":"T24","span":{"begin":187,"end":194},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"r nuclear translocation. Furthermore, the E. coli NleH1 effector specifically inhibited RPS3 S209 revealing how E. coli O157:H7 inhibits this important innate immune response mechanism.\n\nResults\n\nRPS3 phosphorylation in response to NF-"}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T1878","span":{"begin":2,"end":9},"obj":"Entity"},{"id":"T1879","span":{"begin":10,"end":23},"obj":"Localization"},{"id":"T1880","span":{"begin":50,"end":55},"obj":"Protein"},{"id":"T1881","span":{"begin":78,"end":87},"obj":"Negative_regulation"},{"id":"T1882","span":{"begin":88,"end":92},"obj":"Protein"},{"id":"T1883","span":{"begin":93,"end":97},"obj":"Entity"},{"id":"T2479","span":{"begin":196,"end":200},"obj":"Protein"},{"id":"T2480","span":{"begin":201,"end":216},"obj":"Phosphorylation"},{"id":"T2481","span":{"begin":217,"end":231},"obj":"Positive_regulation"}],"relations":[{"id":"R1494","pred":"locationOf","subj":"T1878","obj":"T1879"},{"id":"R1496","pred":"causeOf","subj":"T1880","obj":"T1881"},{"id":"R1498","pred":"themeOf","subj":"T1883","obj":"T1881"},{"id":"R1499","pred":"partOf","subj":"T1883","obj":"T1882"},{"id":"R1965","pred":"themeOf","subj":"T2479","obj":"T2480"},{"id":"R1966","pred":"themeOf","subj":"T2480","obj":"T2481"}],"attributes":[{"id":"M76","pred":"Speculation","subj":"T2481","obj":"true"}],"text":"r nuclear translocation. Furthermore, the E. coli NleH1 effector specifically inhibited RPS3 S209 revealing how E. coli O157:H7 inhibits this important innate immune response mechanism.\n\nResults\n\nRPS3 phosphorylation in response to NF-"}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T1677","span":{"begin":10,"end":23},"obj":"Localization"},{"id":"T1678","span":{"begin":10,"end":23},"obj":"Localization"},{"id":"T1680","span":{"begin":45,"end":64},"obj":"Protein"},{"id":"T1681","span":{"begin":88,"end":97},"obj":"Protein"},{"id":"T1682","span":{"begin":115,"end":124},"obj":"Protein"},{"id":"T1683","span":{"begin":125,"end":127},"obj":"Protein"},{"id":"T1684","span":{"begin":78,"end":87},"obj":"Negative_regulation"},{"id":"T2366","span":{"begin":196,"end":200},"obj":"Protein"},{"id":"T2368","span":{"begin":201,"end":216},"obj":"Phosphorylation"},{"id":"T2371","span":{"begin":220,"end":228},"obj":"Positive_regulation"},{"id":"T2372","span":{"begin":220,"end":228},"obj":"Positive_regulation"},{"id":"T1676","span":{"begin":2,"end":9},"obj":"Entity"}],"relations":[{"id":"R1353","pred":"locationOf","subj":"T1676","obj":"T1677"},{"id":"R1354","pred":"locationOf","subj":"T1676","obj":"T1678"},{"id":"R1355","pred":"causeOf","subj":"T1680","obj":"T1684"},{"id":"R1356","pred":"themeOf","subj":"T1681","obj":"T1684"},{"id":"R1893","pred":"themeOf","subj":"T2366","obj":"T2368"}],"text":"r nuclear translocation. Furthermore, the E. coli NleH1 effector specifically inhibited RPS3 S209 revealing how E. coli O157:H7 inhibits this important innate immune response mechanism.\n\nResults\n\nRPS3 phosphorylation in response to NF-"}
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T773","span":{"begin":2,"end":9},"obj":"Entity"},{"id":"T774","span":{"begin":10,"end":23},"obj":"Localization"},{"id":"T775","span":{"begin":50,"end":55},"obj":"Protein"},{"id":"T776","span":{"begin":78,"end":87},"obj":"Negative_regulation"},{"id":"T777","span":{"begin":88,"end":92},"obj":"Protein"},{"id":"T778","span":{"begin":93,"end":97},"obj":"Entity"},{"id":"T1983","span":{"begin":196,"end":200},"obj":"Protein"},{"id":"T1984","span":{"begin":201,"end":216},"obj":"Phosphorylation"},{"id":"T1985","span":{"begin":217,"end":231},"obj":"Positive_regulation"}],"relations":[{"id":"R621","pred":"locationOf","subj":"T773","obj":"T774"},{"id":"R623","pred":"causeOf","subj":"T775","obj":"T776"},{"id":"R624","pred":"themeOf","subj":"T778","obj":"T776"},{"id":"R625","pred":"partOf","subj":"T778","obj":"T777"},{"id":"R1568","pred":"themeOf","subj":"T1983","obj":"T1984"},{"id":"R1569","pred":"themeOf","subj":"T1984","obj":"T1985"}],"attributes":[{"id":"M53","pred":"Speculation","subj":"T1985","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"r nuclear translocation. Furthermore, the E. coli NleH1 effector specifically inhibited RPS3 S209 revealing how E. coli O157:H7 inhibits this important innate immune response mechanism.\n\nResults\n\nRPS3 phosphorylation in response to NF-"}
test2
{"project":"test2","denotations":[{"id":"T722","span":{"begin":2,"end":9},"obj":"Entity"},{"id":"T723","span":{"begin":10,"end":23},"obj":"Localization"},{"id":"T724","span":{"begin":45,"end":55},"obj":"Protein"},{"id":"T725","span":{"begin":78,"end":87},"obj":"Negative_regulation"},{"id":"T726","span":{"begin":88,"end":92},"obj":"Protein"},{"id":"T727","span":{"begin":93,"end":97},"obj":"Entity"},{"id":"T1962","span":{"begin":196,"end":200},"obj":"Protein"},{"id":"T1963","span":{"begin":201,"end":216},"obj":"Phosphorylation"}],"relations":[{"id":"R590","pred":"locationOf","subj":"T722","obj":"T723"},{"id":"R592","pred":"causeOf","subj":"T724","obj":"T725"},{"id":"R593","pred":"partOf","subj":"T727","obj":"T726"},{"id":"R1558","pred":"themeOf","subj":"T1962","obj":"T1963"}],"attributes":[{"id":"M46","pred":"Speculation","subj":"T1963","obj":"true"}],"text":"r nuclear translocation. Furthermore, the E. coli NleH1 effector specifically inhibited RPS3 S209 revealing how E. coli O157:H7 inhibits this important innate immune response mechanism.\n\nResults\n\nRPS3 phosphorylation in response to NF-"}