> top > docs > PMC:3062687 > spans > 25007-25299 > annotations

PMC:3062687 / 25007-25299 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18791 42-45 P21579 denotes p65
T18792 42-45 Q04206 denotes p65
T18793 137-141 O14920 denotes IKKβ
T18794 183-187 P23396 denotes RPS3
T18795 239-243 O14920 denotes IKKβ

2_test

Id Subject Object Predicate Lexical cue
21399639-16818647-74765180 83-85 16818647 denotes 41
21399639-16818647-74765180 83-85 16818647 denotes 41
21399639-10938077-74765180 83-85 10938077 denotes 41
21399639-10938077-74765180 83-85 10938077 denotes 41
21399639-15033982-74765180 83-85 15033982 denotes 41
21399639-15033982-74765180 83-85 15033982 denotes 41

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18291 0-3 NN denotes CK2
T18292 4-7 VB denotes was
T18293 8-18 RB denotes previously
T18294 19-24 VB denotes shown
T18295 25-27 TO denotes to
T18296 28-41 VB denotes phosphorylate
T18297 42-45 NN denotes p65
T18298 46-49 CC denotes and
T18299 50-52 TO denotes to
T18300 53-57 VB denotes bind
T18301 58-60 TO denotes to
T18302 61-64 CC denotes and
T18303 65-78 VB denotes phosphorylate
T18304 79-88 NN denotes IKKβ41-43
T18305 88-89 -COMMA- denotes ,
T18306 90-97 RB denotes however
T18307 97-98 -COMMA- denotes ,
T18308 99-101 PRP denotes we
T18309 102-107 VB denotes ruled
T18310 108-111 RP denotes out
T18311 112-115 DT denotes the
T18312 116-127 NN denotes possibility
T18313 128-132 IN denotes that
T18314 133-136 DT denotes the
T18315 137-147 JJ denotes IKKβ-bound
T18316 148-151 NN denotes CK2
T18317 152-157 MD denotes could
T18318 158-165 VB denotes account
T18319 166-169 IN denotes for
T18320 170-173 DT denotes the
T18321 174-182 VB denotes observed
T18322 183-187 NN denotes RPS3
T18323 188-203 NN denotes phosphorylation
T18324 204-211 IN denotes because
T18325 212-214 DT denotes no
T18326 215-218 NN denotes CK2
T18327 219-222 VB denotes was
T18328 223-231 VB denotes detected
T18329 232-234 IN denotes in
T18330 235-238 DT denotes the
T18331 239-243 NN denotes IKKβ
T18332 244-256 NN denotes preparations
T18333 257-261 VB denotes used
T18334 262-265 IN denotes for
T18335 266-269 DT denotes the
T18336 270-272 FW denotes in
T18337 273-278 FW denotes vitro
T18338 279-285 NN denotes kinase
T18339 286-291 NN denotes assay
R14549 T18291 T18292 arg1Of CK2,was
R14550 T18291 T18294 arg2Of CK2,shown
R14551 T18291 T18296 arg1Of CK2,phosphorylate
R14552 T18291 T18300 arg1Of CK2,bind
R14553 T18291 T18303 arg1Of CK2,phosphorylate
R14554 T18294 T18292 arg2Of shown,was
R14555 T18294 T18293 arg1Of shown,previously
R14556 T18294 T18305 arg1Of shown,","
R14557 T18294 T18306 arg1Of shown,however
R14558 T18294 T18307 arg1Of shown,","
R14559 T18296 T18295 arg1Of phosphorylate,to
R14560 T18296 T18298 arg1Of phosphorylate,and
R14561 T18297 T18296 arg2Of p65,phosphorylate
R14562 T18298 T18294 arg3Of and,shown
R14563 T18300 T18301 arg1Of bind,to
R14564 T18300 T18302 arg1Of bind,and
R14565 T18302 T18298 arg2Of and,and
R14566 T18302 T18299 arg1Of and,to
R14567 T18303 T18302 arg2Of phosphorylate,and
R14568 T18304 T18303 arg2Of IKKβ41-43,phosphorylate
R14569 T18307 T18329 arg1Of ",",in
R14570 T18308 T18309 arg1Of we,ruled
R14571 T18309 T18307 arg2Of ruled,","
R14572 T18309 T18310 arg1Of ruled,out
R14573 T18309 T18324 arg1Of ruled,because
R14574 T18312 T18309 arg2Of possibility,ruled
R14575 T18312 T18311 arg1Of possibility,the
R14576 T18316 T18314 arg1Of CK2,the
R14577 T18316 T18315 arg1Of CK2,IKKβ-bound
R14578 T18316 T18317 arg1Of CK2,could
R14579 T18316 T18318 arg1Of CK2,account
R14580 T18318 T18312 arg2Of account,possibility
R14581 T18318 T18313 arg1Of account,that
R14582 T18318 T18317 arg2Of account,could
R14583 T18318 T18319 arg1Of account,for
R14584 T18323 T18319 arg2Of phosphorylation,for
R14585 T18323 T18320 arg1Of phosphorylation,the
R14586 T18323 T18321 arg2Of phosphorylation,observed
R14587 T18323 T18322 arg1Of phosphorylation,RPS3
R14588 T18326 T18325 arg1Of CK2,no
R14589 T18326 T18327 arg1Of CK2,was
R14590 T18326 T18328 arg2Of CK2,detected
R14591 T18328 T18324 arg2Of detected,because
R14592 T18328 T18327 arg2Of detected,was
R14593 T18332 T18329 arg2Of preparations,in
R14594 T18332 T18330 arg1Of preparations,the
R14595 T18332 T18331 arg1Of preparations,IKKβ
R14596 T18332 T18333 arg2Of preparations,used
R14597 T18333 T18334 arg1Of used,for
R14598 T18337 T18336 arg1Of vitro,in
R14599 T18339 T18334 arg2Of assay,for
R14600 T18339 T18335 arg1Of assay,the
R14601 T18339 T18337 arg1Of assay,vitro
R14602 T18339 T18338 arg1Of assay,kinase

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18979 0-3 CD denotes CK2
T18980 4-7 VBD denotes was
T18981 8-18 RB denotes previously
T18982 19-24 VBN denotes shown
T18983 25-27 TO denotes to
T18984 28-41 VB denotes phosphorylate
T18985 42-45 NNS denotes p65
T18986 46-49 CC denotes and
T18987 50-52 TO denotes to
T18988 53-57 NN denotes bind
T18989 58-60 TO denotes to
T18990 61-64 CC denotes and
T18991 65-78 VB denotes phosphorylate
T18992 79-88 JJ denotes IKKβ41-43
T18993 88-89 , denotes ,
T18994 90-97 RB denotes however
T18995 97-98 , denotes ,
T18996 99-101 PRP denotes we
T18997 102-107 VBD denotes ruled
T18998 108-111 RP denotes out
T18999 112-115 DT denotes the
T19000 116-127 NN denotes possibility
T19001 128-132 IN denotes that
T19002 133-136 DT denotes the
T19003 137-147 JJ denotes IKKβ-bound
T19004 148-151 NN denotes CK2
T19005 152-157 MD denotes could
T19006 158-165 VB denotes account
T19007 166-169 IN denotes for
T19008 170-173 DT denotes the
T19009 174-182 JJ denotes observed
T19010 183-187 NN denotes RPS3
T19011 188-203 NN denotes phosphorylation
T19012 204-211 IN denotes because
T19013 212-214 DT denotes no
T19014 215-218 NN denotes CK2
T19015 219-222 VBD denotes was
T19016 223-231 VBN denotes detected
T19017 232-234 IN denotes in
T19018 235-238 DT denotes the
T19019 239-243 NNP denotes IKKβ
T19020 244-256 NNS denotes preparations
T19021 257-261 VBD denotes used
T19022 262-265 IN denotes for
T19023 266-269 DT denotes the
T19024 270-272 IN denotes in
T19025 273-278 NN denotes vitro
T19026 279-285 NN denotes kinase
T19027 286-291 NN denotes assay
T19028 291-292 . denotes .
R15202 T18979 T18982 nsubjpass CK2,shown
R15203 T18980 T18982 auxpass was,shown
R15204 T18981 T18982 advmod previously,shown
R15205 T18982 T18982 ROOT shown,shown
R15206 T18983 T18984 aux to,phosphorylate
R15207 T18984 T18982 xcomp phosphorylate,shown
R15208 T18985 T18984 dobj p65,phosphorylate
R15209 T18986 T18984 cc and,phosphorylate
R15210 T18987 T18988 aux to,bind
R15211 T18988 T18982 advcl bind,shown
R15212 T18989 T18988 prep to,bind
R15213 T18990 T18988 cc and,bind
R15214 T18991 T18992 compound phosphorylate,IKKβ41-43
R15215 T18992 T18988 conj IKKβ41-43,bind
R15216 T18993 T18997 punct ",",ruled
R15217 T18994 T18997 advmod however,ruled
R15218 T18995 T18997 punct ",",ruled
R15219 T18996 T18997 nsubj we,ruled
R15220 T18997 T18982 advcl ruled,shown
R15221 T18998 T18997 prt out,ruled
R15222 T18999 T19000 det the,possibility
R15223 T19000 T18997 dobj possibility,ruled
R15224 T19001 T19006 mark that,account
R15225 T19002 T19004 det the,CK2
R15226 T19003 T19004 amod IKKβ-bound,CK2
R15227 T19004 T19006 nsubj CK2,account
R15228 T19005 T19006 aux could,account
R15229 T19006 T19000 acl account,possibility
R15230 T19007 T19006 prep for,account
R15231 T19008 T19011 det the,phosphorylation
R15232 T19009 T19011 amod observed,phosphorylation
R15233 T19010 T19011 compound RPS3,phosphorylation
R15234 T19011 T19007 pobj phosphorylation,for
R15235 T19012 T19016 mark because,detected
R15236 T19013 T19014 det no,CK2
R15237 T19014 T19016 nsubjpass CK2,detected
R15238 T19015 T19016 auxpass was,detected
R15239 T19016 T19006 advcl detected,account
R15240 T19017 T19016 prep in,detected
R15241 T19018 T19020 det the,preparations
R15242 T19019 T19020 compound IKKβ,preparations
R15243 T19020 T19017 pobj preparations,in
R15244 T19021 T19020 acl used,preparations
R15245 T19022 T19021 prep for,used
R15246 T19023 T19027 det the,assay
R15247 T19024 T19027 nmod in,assay
R15248 T19025 T19027 amod vitro,assay
R15249 T19026 T19027 compound kinase,assay
R15250 T19027 T19022 pobj assay,for
R15251 T19028 T18982 punct .,shown

GO-BP

Id Subject Object Predicate Lexical cue
T19606 188-203 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T18129 0-292 Sentence denotes CK2 was previously shown to phosphorylate p65 and to bind to and phosphorylate IKKβ41-43, however, we ruled out the possibility that the IKKβ-bound CK2 could account for the observed RPS3 phosphorylation because no CK2 was detected in the IKKβ preparations used for the in vitro kinase assay.
T172 0-292 Sentence denotes CK2 was previously shown to phosphorylate p65 and to bind to and phosphorylate IKKβ41-43, however, we ruled out the possibility that the IKKβ-bound CK2 could account for the observed RPS3 phosphorylation because no CK2 was detected in the IKKβ preparations used for the in vitro kinase assay.

events-check-again

Id Subject Object Predicate Lexical cue Negation
T20048 28-41 Phosphorylation denotes phosphorylate
T20049 42-45 Protein denotes p65
T20050 53-57 Binding denotes bind
T20051 65-78 Phosphorylation denotes phosphorylate
T20052 79-83 Protein denotes IKKβ
T20053 137-141 Protein denotes IKKβ
T20054 142-147 Binding denotes bound
T20055 158-169 Positive_regulation denotes account for true
T20056 183-187 Protein denotes RPS3
T20057 188-203 Phosphorylation denotes phosphorylation
T20058 239-243 Protein denotes IKKβ
R16012 T20049 T20048 themeOf p65,phosphorylate
R16013 T20052 T20050 themeOf IKKβ,bind
R16014 T20052 T20051 themeOf IKKβ,phosphorylate
R16015 T20053 T20054 themeOf IKKβ,bound
R16016 T20054 T20055 causeOf bound,account for
R16017 T20056 T20057 themeOf RPS3,phosphorylation
R16018 T20057 T20055 themeOf phosphorylation,account for

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T19678 0-3 Protein denotes CK2
T19679 42-45 Protein denotes p65
T19680 137-141 Protein denotes IKKβ
T19681 148-151 Protein denotes CK2
T19682 183-187 Protein denotes RPS3
T19683 215-218 Protein denotes CK2
T19684 239-243 Protein denotes IKKβ
T19685 28-41 Phosphorylation denotes phosphorylate
T19686 53-57 Binding denotes bind
T19687 142-147 Binding denotes bound
T19688 142-147 Binding denotes bound
T19689 188-203 Phosphorylation denotes phosphorylation
T19690 223-231 Gene_expression denotes detected
T19691 158-165 Positive_regulation denotes account
R15782 T19678 T19686 themeOf CK2,bind
R15783 T19679 T19685 themeOf p65,phosphorylate
R15784 T19680 T19687 themeOf IKKβ,bound
R15785 T19680 T19688 themeOf IKKβ,bound
R15786 T19681 T19688 themeOf CK2,bound
R15787 T19681 T19691 causeOf CK2,account
R15788 T19682 T19689 themeOf RPS3,phosphorylation
R15789 T19683 T19690 themeOf CK2,detected
R15790 T19689 T19691 themeOf phosphorylation,account

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T18060 28-41 Phosphorylation denotes phosphorylate
T18061 42-45 Protein denotes p65
T18062 53-57 Binding denotes bind
T18063 65-78 Phosphorylation denotes phosphorylate
T18064 79-83 Protein denotes IKKβ
T18065 137-141 Protein denotes IKKβ
T18066 142-147 Binding denotes bound
T18067 158-169 Positive_regulation denotes account for true
T18068 183-187 Protein denotes RPS3
T18069 188-203 Phosphorylation denotes phosphorylation
T18070 239-243 Protein denotes IKKβ
R14366 T18061 T18060 themeOf p65,phosphorylate
R14367 T18064 T18062 themeOf IKKβ,bind
R14368 T18064 T18063 themeOf IKKβ,phosphorylate
R14369 T18065 T18066 themeOf IKKβ,bound
R14370 T18066 T18067 causeOf bound,account for
R14371 T18068 T18069 themeOf RPS3,phosphorylation
R14372 T18069 T18067 themeOf phosphorylation,account for

test2

Id Subject Object Predicate Lexical cue Negation
T17975 28-41 Phosphorylation denotes phosphorylate
T17976 42-45 Protein denotes p65
T17977 53-57 Binding denotes bind true
T17978 65-78 Phosphorylation denotes phosphorylate
T17979 79-83 Protein denotes IKKβ
T17980 137-141 Protein denotes IKKβ
T17981 142-147 Binding denotes bound
T17982 158-165 Regulation denotes account true
T17983 183-187 Protein denotes RPS3
T17984 188-203 Phosphorylation denotes phosphorylation
T17985 239-243 Protein denotes IKKβ
R14310 T17976 T17975 themeOf p65,phosphorylate
R14311 T17976 T17977 themeOf p65,bind
R14312 T17979 T17977 themeOf IKKβ,bind
R14313 T17979 T17978 themeOf IKKβ,phosphorylate
R14314 T17980 T17982 causeOf IKKβ,account
R14315 T17980 T17981 themeOf IKKβ,bound
R14316 T17981 T17982 causeOf bound,account
R14317 T17983 T17984 themeOf RPS3,phosphorylation
R14318 T17984 T17982 themeOf phosphorylation,account