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PMC:3062687 / 19238-19481 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13944 123-127 P23396 denotes RPS3
T13945 171-177 P23396 denotes ΔnleH1
T13946 194-198 P23396 denotes RPS3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T13870 0-10 JJ denotes Consistent
T13871 11-15 IN denotes with
T13872 16-18 FW denotes in
T13873 19-24 FW denotes vitro
T13874 25-29 NN denotes data
T13875 29-30 -COMMA- denotes ,
T13876 31-38 NN denotes piglets
T13877 39-47 VB denotes infected
T13878 48-52 IN denotes with
T13879 53-62 JJ denotes wild-type
T13880 63-65 FW denotes E.
T13881 66-70 FW denotes coli
T13882 71-75 NN denotes O157
T13883 75-76 -COLON- denotes :
T13884 76-78 NN denotes H7
T13885 79-88 VB denotes exhibited
T13886 89-96 JJ denotes diffuse
T13887 97-100 CC denotes and
T13888 101-104 JJ denotes low
T13889 105-114 NN denotes intensity
T13890 115-127 NN denotes phospho-RPS3
T13891 128-136 NN denotes staining
T13892 136-137 -COMMA- denotes ,
T13893 138-145 IN denotes whereas
T13894 146-148 IN denotes in
T13895 149-156 NN denotes piglets
T13896 157-165 VB denotes infected
T13897 166-170 IN denotes with
T13898 171-177 NN denotes ΔnleH1
T13899 178-184 NN denotes mutant
T13900 184-185 -COMMA- denotes ,
T13901 186-198 NN denotes phospho-RPS3
T13902 199-209 NN denotes expression
T13903 210-213 VB denotes was
T13904 214-220 JJ denotes florid
T13905 221-224 CC denotes and
T13906 225-232 JJ denotes intense
T13907 233-234 -LRB- denotes (
T13908 234-238 NNP denotes Fig.
T13909 239-241 CD denotes 6f
T13910 241-242 -RRB- denotes )
R11139 T13870 T13871 arg1Of Consistent,with
R11140 T13873 T13872 arg1Of vitro,in
R11141 T13874 T13871 arg2Of data,with
R11142 T13874 T13873 arg1Of data,vitro
R11143 T13876 T13870 arg1Of piglets,Consistent
R11144 T13876 T13877 arg2Of piglets,infected
R11145 T13876 T13885 arg1Of piglets,exhibited
R11146 T13877 T13878 arg1Of infected,with
R11147 T13882 T13879 arg1Of O157,wild-type
R11148 T13882 T13880 arg1Of O157,E.
R11149 T13882 T13881 arg1Of O157,coli
R11150 T13882 T13883 arg1Of O157,:
R11151 T13883 T13878 arg2Of :,with
R11152 T13884 T13883 arg2Of H7,:
R11153 T13885 T13870 modOf exhibited,Consistent
R11154 T13885 T13875 arg1Of exhibited,","
R11155 T13885 T13892 arg1Of exhibited,","
R11156 T13885 T13893 arg1Of exhibited,whereas
R11157 T13886 T13887 arg1Of diffuse,and
R11158 T13888 T13887 arg2Of low,and
R11159 T13891 T13885 arg2Of staining,exhibited
R11160 T13891 T13886 arg1Of staining,diffuse
R11161 T13891 T13888 arg1Of staining,low
R11162 T13891 T13889 arg1Of staining,intensity
R11163 T13891 T13890 arg1Of staining,phospho-RPS3
R11164 T13895 T13894 arg2Of piglets,in
R11165 T13895 T13896 arg2Of piglets,infected
R11166 T13896 T13897 arg1Of infected,with
R11167 T13899 T13897 arg2Of mutant,with
R11168 T13899 T13898 arg1Of mutant,ΔnleH1
R11169 T13902 T13901 arg1Of expression,phospho-RPS3
R11170 T13902 T13903 arg1Of expression,was
R11171 T13902 T13904 arg1Of expression,florid
R11172 T13902 T13906 arg1Of expression,intense
R11173 T13903 T13893 arg2Of was,whereas
R11174 T13903 T13894 arg1Of was,in
R11175 T13903 T13900 arg1Of was,","
R11176 T13903 T13907 arg1Of was,(
R11177 T13904 T13905 arg1Of florid,and
R11178 T13905 T13903 arg2Of and,was
R11179 T13906 T13905 arg2Of intense,and
R11180 T13908 T13907 arg2Of Fig.,(
R11181 T13908 T13909 arg1Of Fig.,6f
R11182 T13910 T13907 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14061 0-10 JJ denotes Consistent
T14062 11-15 IN denotes with
T14063 16-18 IN denotes in
T14064 19-24 NN denotes vitro
T14065 25-29 NNS denotes data
T14066 29-30 , denotes ,
T14067 31-38 NNS denotes piglets
T14068 39-47 VBN denotes infected
T14069 48-52 IN denotes with
T14070 53-62 JJ denotes wild-type
T14071 63-65 NNP denotes E.
T14072 66-70 NNS denotes coli
T14073 71-75 NNP denotes O157
T14074 75-76 : denotes :
T14075 76-78 NNP denotes H7
T14076 79-88 VBD denotes exhibited
T14077 89-96 NN denotes diffuse
T14078 97-100 CC denotes and
T14079 101-104 JJ denotes low
T14080 105-114 NN denotes intensity
T14081 115-127 NN denotes phospho-RPS3
T14082 128-136 NN denotes staining
T14083 136-137 , denotes ,
T14084 138-145 IN denotes whereas
T14085 146-148 IN denotes in
T14086 149-156 NNS denotes piglets
T14087 157-165 VBN denotes infected
T14088 166-170 IN denotes with
T14089 171-177 JJ denotes ΔnleH1
T14090 178-184 JJ denotes mutant
T14091 184-185 , denotes ,
T14092 186-198 JJ denotes phospho-RPS3
T14093 199-209 NN denotes expression
T14094 210-213 VBD denotes was
T14095 214-220 JJ denotes florid
T14096 221-224 CC denotes and
T14097 225-232 JJ denotes intense
T14098 233-234 -LRB- denotes (
T14099 234-238 NNP denotes Fig.
T14100 239-241 CD denotes 6f
T14101 241-242 -RRB- denotes )
T14102 242-243 . denotes .
R11321 T14061 T14076 advmod Consistent,exhibited
R11322 T14062 T14061 prep with,Consistent
R11323 T14063 T14076 prep in,exhibited
R11324 T14064 T14065 amod vitro,data
R11325 T14065 T14063 pobj data,in
R11326 T14066 T14076 punct ",",exhibited
R11327 T14067 T14076 nsubj piglets,exhibited
R11328 T14068 T14067 acl infected,piglets
R11329 T14069 T14068 prep with,infected
R11330 T14070 T14073 amod wild-type,O157
R11331 T14071 T14073 compound E.,O157
R11332 T14072 T14073 compound coli,O157
R11333 T14073 T14069 pobj O157,with
R11334 T14074 T14076 punct :,exhibited
R11335 T14075 T14076 nsubj H7,exhibited
R11336 T14076 T14076 ROOT exhibited,exhibited
R11337 T14077 T14076 dobj diffuse,exhibited
R11338 T14078 T14077 cc and,diffuse
R11339 T14079 T14080 amod low,intensity
R11340 T14080 T14082 nmod intensity,staining
R11341 T14081 T14082 compound phospho-RPS3,staining
R11342 T14082 T14077 conj staining,diffuse
R11343 T14083 T14076 punct ",",exhibited
R11344 T14084 T14094 mark whereas,was
R11345 T14085 T14094 prep in,was
R11346 T14086 T14085 pobj piglets,in
R11347 T14087 T14086 acl infected,piglets
R11348 T14088 T14087 prep with,infected
R11349 T14089 T14093 amod ΔnleH1,expression
R11350 T14090 T14093 amod mutant,expression
R11351 T14091 T14093 punct ",",expression
R11352 T14092 T14093 amod phospho-RPS3,expression
R11353 T14093 T14088 pobj expression,with
R11354 T14094 T14076 advcl was,exhibited
R11355 T14095 T14094 acomp florid,was
R11356 T14096 T14095 cc and,florid
R11357 T14097 T14095 conj intense,florid
R11358 T14098 T14099 punct (,Fig.
R11359 T14099 T14094 appos Fig.,was
R11360 T14100 T14099 nummod 6f,Fig.
R11361 T14101 T14099 punct ),Fig.
R11362 T14102 T14076 punct .,exhibited

sentences

Id Subject Object Predicate Lexical cue
T13760 0-243 Sentence denotes Consistent with in vitro data, piglets infected with wild-type E. coli O157:H7 exhibited diffuse and low intensity phospho-RPS3 staining, whereas in piglets infected with ΔnleH1 mutant, phospho-RPS3 expression was florid and intense (Fig. 6f).
T132 0-243 Sentence denotes Consistent with in vitro data, piglets infected with wild-type E. coli O157:H7 exhibited diffuse and low intensity phospho-RPS3 staining, whereas in piglets infected with ΔnleH1 mutant, phospho-RPS3 expression was florid and intense (Fig. 6f).

events-check-again

Id Subject Object Predicate Lexical cue
T14290 101-104 Negative_regulation denotes low
T14291 115-122 Phosphorylation denotes phospho
T14292 123-127 Protein denotes RPS3
T14293 171-177 Protein denotes ΔnleH1
T14294 186-193 Phosphorylation denotes phospho
T14295 194-198 Protein denotes RPS3
T14296 225-232 Positive_regulation denotes intense
R11490 T14291 T14290 themeOf phospho,low
R11491 T14292 T14291 themeOf RPS3,phospho
R11492 T14293 T14296 causeOf ΔnleH1,intense
R11493 T14294 T14296 themeOf phospho,intense
R11494 T14295 T14294 themeOf RPS3,phospho

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T14185 123-127 Protein denotes RPS3
T14186 194-198 Protein denotes RPS3
T14187 199-209 Gene_expression denotes expression
R11418 T14186 T14187 themeOf RPS3,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T13743 101-104 Negative_regulation denotes low
T13744 115-122 Phosphorylation denotes phospho
T13745 123-127 Protein denotes RPS3
T13746 171-177 Protein denotes ΔnleH1
T13747 186-193 Phosphorylation denotes phospho
T13748 194-198 Protein denotes RPS3
T13749 225-232 Positive_regulation denotes intense
R11023 T13744 T13743 themeOf phospho,low
R11024 T13745 T13744 themeOf RPS3,phospho
R11025 T13746 T13749 causeOf ΔnleH1,intense
R11026 T13747 T13749 themeOf phospho,intense
R11027 T13748 T13747 themeOf RPS3,phospho

test2

Id Subject Object Predicate Lexical cue
T13717 171-177 Protein denotes ΔnleH1
T13718 186-193 Phosphorylation denotes phospho
T13719 194-198 Protein denotes RPS3
T13720 199-209 Gene_expression denotes expression
T13716 123-127 Protein denotes RPS3