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PMC:3062687 / 17039-17166 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12410 21-24 P01375 denotes TNF
T12411 68-72 P23396 denotes RPS3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12153 0-2 IN denotes In
T12154 3-13 JJ denotes uninfected
T12155 14-19 NN denotes cells
T12156 19-20 -COMMA- denotes ,
T12157 21-34 NN denotes TNF-treatment
T12158 35-45 VB denotes stimulated
T12159 46-47 DT denotes a
T12160 48-55 JJ denotes ∼7-fold
T12161 56-64 NN denotes increase
T12162 65-67 IN denotes in
T12163 68-72 NN denotes RPS3
T12164 73-77 NN denotes S209
T12165 78-93 NN denotes phosphorylation
T12166 93-94 -COMMA- denotes ,
T12167 95-102 VB denotes peaking
T12168 103-105 IN denotes at
T12169 106-108 CD denotes 30
T12170 109-116 NN denotes minutes
T12171 117-118 -LRB- denotes (
T12172 118-122 NNP denotes Fig.
T12173 123-125 CD denotes 6d
T12174 125-126 -RRB- denotes )
R9782 T12155 T12153 arg2Of cells,In
R9783 T12155 T12154 arg1Of cells,uninfected
R9784 T12157 T12158 arg1Of TNF-treatment,stimulated
R9785 T12157 T12167 arg1Of TNF-treatment,peaking
R9786 T12158 T12153 arg1Of stimulated,In
R9787 T12158 T12156 arg1Of stimulated,","
R9788 T12158 T12166 arg1Of stimulated,","
R9789 T12158 T12167 modOf stimulated,peaking
R9790 T12161 T12158 arg2Of increase,stimulated
R9791 T12161 T12159 arg1Of increase,a
R9792 T12161 T12160 arg1Of increase,∼7-fold
R9793 T12161 T12162 arg1Of increase,in
R9794 T12165 T12162 arg2Of phosphorylation,in
R9795 T12165 T12163 arg1Of phosphorylation,RPS3
R9796 T12165 T12164 arg1Of phosphorylation,S209
R9797 T12167 T12168 arg1Of peaking,at
R9798 T12167 T12171 arg1Of peaking,(
R9799 T12170 T12168 arg2Of minutes,at
R9800 T12170 T12169 arg1Of minutes,30
R9801 T12172 T12171 arg2Of Fig.,(
R9802 T12172 T12173 arg1Of Fig.,6d
R9803 T12174 T12171 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12643 0-2 IN denotes In
T12644 3-13 JJ denotes uninfected
T12645 14-19 NNS denotes cells
T12646 19-20 , denotes ,
T12647 21-34 JJ denotes TNF-treatment
T12648 35-45 VBD denotes stimulated
T12649 46-47 DT denotes a
T12650 48-49 NN denotes ∼
T12651 49-55 JJ denotes 7-fold
T12652 56-64 NN denotes increase
T12653 65-67 IN denotes in
T12654 68-72 NNP denotes RPS3
T12655 73-77 NNP denotes S209
T12656 78-93 NN denotes phosphorylation
T12657 93-94 , denotes ,
T12658 95-102 VBG denotes peaking
T12659 103-105 IN denotes at
T12660 106-108 CD denotes 30
T12661 109-116 NNS denotes minutes
T12662 117-118 -LRB- denotes (
T12663 118-122 NNP denotes Fig.
T12664 123-125 CD denotes 6d
T12665 125-126 -RRB- denotes )
T12666 126-127 . denotes .
R10220 T12643 T12648 prep In,stimulated
R10221 T12644 T12645 amod uninfected,cells
R10222 T12645 T12643 pobj cells,In
R10223 T12646 T12648 punct ",",stimulated
R10224 T12647 T12648 nsubj TNF-treatment,stimulated
R10225 T12648 T12648 ROOT stimulated,stimulated
R10226 T12649 T12652 det a,increase
R10227 T12650 T12652 amod ∼,increase
R10228 T12651 T12652 amod 7-fold,increase
R10229 T12652 T12648 dobj increase,stimulated
R10230 T12653 T12652 prep in,increase
R10231 T12654 T12656 compound RPS3,phosphorylation
R10232 T12655 T12656 compound S209,phosphorylation
R10233 T12656 T12653 pobj phosphorylation,in
R10234 T12657 T12648 punct ",",stimulated
R10235 T12658 T12648 advcl peaking,stimulated
R10236 T12659 T12658 prep at,peaking
R10237 T12660 T12661 nummod 30,minutes
R10238 T12661 T12659 pobj minutes,at
R10239 T12662 T12661 punct (,minutes
R10240 T12663 T12661 appos Fig.,minutes
R10241 T12664 T12663 nummod 6d,Fig.
R10242 T12665 T12661 punct ),minutes
R10243 T12666 T12648 punct .,stimulated

GO-BP

Id Subject Object Predicate Lexical cue
T13014 78-93 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T13031 14-19 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T11946 0-127 Sentence denotes In uninfected cells, TNF-treatment stimulated a ∼7-fold increase in RPS3 S209 phosphorylation, peaking at 30 minutes (Fig. 6d).
T118 0-127 Sentence denotes In uninfected cells, TNF-treatment stimulated a ∼7-fold increase in RPS3 S209 phosphorylation, peaking at 30 minutes (Fig. 6d).

events-check-again

Id Subject Object Predicate Lexical cue
T13507 21-24 Protein denotes TNF
T13508 56-64 Positive_regulation denotes increase
T13509 68-72 Protein denotes RPS3
T13510 73-77 Entity denotes S209
T13511 78-93 Phosphorylation denotes phosphorylation
R10854 T13507 T13508 causeOf TNF,increase
R10855 T13510 T13511 themeOf S209,phosphorylation
R10856 T13510 T13509 partOf S209,RPS3
R10857 T13511 T13508 themeOf phosphorylation,increase

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T13089 21-24 Protein denotes TNF
T13090 68-77 Protein denotes RPS3 S209
T13091 78-93 Phosphorylation denotes phosphorylation
T13092 56-64 Positive_regulation denotes increase
R10569 T13090 T13091 themeOf RPS3 S209,phosphorylation
R10570 T13091 T13092 themeOf phosphorylation,increase

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T11879 21-24 Protein denotes TNF
T11880 56-64 Positive_regulation denotes increase
T11881 68-72 Protein denotes RPS3
T11882 73-77 Entity denotes S209
T11883 78-93 Phosphorylation denotes phosphorylation
R9541 T11879 T11880 causeOf TNF,increase
R9542 T11882 T11883 themeOf S209,phosphorylation
R9543 T11882 T11881 partOf S209,RPS3
R9544 T11883 T11880 themeOf phosphorylation,increase

test2

Id Subject Object Predicate Lexical cue
T11770 21-24 Protein denotes TNF
T11771 56-64 Positive_regulation denotes increase
T11772 68-72 Protein denotes RPS3
T11773 73-77 Entity denotes S209
T11774 78-93 Phosphorylation denotes phosphorylation
R9459 T11770 T11771 causeOf TNF,increase
R9460 T11773 T11772 partOf S209,RPS3
R9461 T11773 T11774 themeOf S209,phosphorylation
R9462 T11774 T11771 themeOf phosphorylation,increase